BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472155
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19330.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1755 0.0
AT1G75060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 586 2e-166
> AT1G19330.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1).
| chr1:6680563-6683533 REVERSE LENGTH=1251
Length=1251
Score = 1755 bits (950), Expect = 0.0
Identities = 1125/1205 (93%), Gaps = 30/1205 (2%)
Strand=Plus/Plus
Query 6 tctc-tcttctctctctactttcttcttGTGGGACAAACCCTAATTATTTTACATCGATC 64
|||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 28 TCTCTTCTTCTCTCTCTGC-TTCTTCTTGTGGGACAAACCCTAATTATTTTACTTCGATA 86
Query 65 TCTCTCCACTTTTCCCGCTCAATCATCTGATCTTTCCCTCTCTTAGCAATGCATGATCTT 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 87 TCTCTCCACTTTTCCCGCTCAATCATCTGATCTTTCCCTCTCTCAGCAATGCATGATCTT 146
Query 125 CGATTTTGTATCAGTGTTCACAGCTG-AAAACTTCGAAGTGGGTCTGTTGGTTTCTTC-- 181
||||||| |||||||||||| ||||| |||| ||||| ||||||||||| |||||||
Sbjct 147 CGATTTTCTATCAGTGTTCAAAGCTGAAAAAAATCGAACTGGGTCTGTTGATTTCTTCAG 206
Query 182 G----------GATTAGATTagagaagaagaagaagaaTGCTGGAAGCTGTAGATAGCTC 231
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTCTAAAATCAGATTAGATTAGAGAAGAAGAAGAAGAATGCTGGAAGCTGTAGATAGCTC 266
Query 232 AGGAGTGGTCAATGGAGGATTCCCACAGATACAGAGCTTTTACGGCGATTGCAGTAGTGA 291
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 267 AGGAGTGGTGAATGGAGGATTCCCGCAGATTCAGAGCTTTTACGGCGATTGCAGTAGTGA 326
Query 292 AGAAGAGTTATCAGTTTTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGTAC 351
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 327 AGAAGAGTTATCGGTATTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGGAC 386
Query 352 GAAATCGGTGCTTGTTGGTCTTCAAGGTGTTGTTAAAAAAGCTGTCGGTCTCGGTGGTTG 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 387 GAAATCGGTGCTTGTTGGTCTTCAAGGTGTTGTCAAAAAAGCTGTCGGTCTCGGTGGTTG 446
Query 412 GCATTGGCTGGTAAAGTTGACAAATGGCATAGAAGTAAAATTGCAGAGGAATGCGCTTAG 471
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 447 GCATTGGCTGGT---TTTGACAAATGGAATAGAAGTAAAGTTGCAGAGGAATGCGCTTAG 503
Query 472 TGTCCTTGAACATCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGAAAACACACA 531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TGTCCTTGAACCTCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGAAAACACACA 563
Query 532 GAGGAATGGCTCCGATATGATTGTTTCTTTTCCAGCATCTGAGGACACGCTGAAGCCTCA 591
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 564 GAGGAATGGCTCTGATATGATTGTTTCTTTTCCAGCATCTGAGGACACACTGAAGCCTCA 623
Query 592 TAAGTCGAAGCAAAGAGGGCAGAGATCATCGCGGTCATCTCACAAGACAATGAGCAGATC 651
||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 624 TAAGTCGAAGCTAAGAGGGCAGAGATCATCTCGGTCATCTCACAAGACGATGAGCAGGTC 683
Query 652 TCTATCATCTGACTCGCAATCAAAAAGTTCGGGTTTTACTCC-CCGTGAAAACAT---GA 707
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 684 TCTATCATCTGACTCGCAATCAAAAAGTTCGGGTTTTACTCCTCC-TGAAAACATGCAGA 742
Query 708 AGGTTGATCTAAGCAAATTGGAAATGCCCGCTTTACTGAATTATTGGCGACATTTTAACC 767
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 743 AGGTTGATCTTAGCAAATTGGAAATGCCTGCTTTACTGAATTATTGGCGACATTTTAACC 802
Query 768 TTGTGGATGCAATTCCTAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACT 827
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TTGTGGATGCAATTCCAAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACT 862
Query 828 TCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAAAGA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAAAGA 922
Query 888 GAATGAAGAAGGCATGCAAGTTGCAATCGAAAGAAGCCAGAAACACTGATCTTAACTGCA 947
||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 923 GAATGAAGAAGGCTTGCAAGTTTCAATCCAAAGAATCCAGAAACACTGATCTTAACTGCA 982
Query 948 TCAGCTAAAAAAGAAGCCCTGACTTTTAACAAATCATGTATGTACGGTACACCGACTTGT 1007
||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||
Sbjct 983 TCAGCTAAAGAA-AAGCCCTGACTCTTAACAAATCCTGTATGTACGGTACATCAACTTGT 1041
Query 1008 TTAACCATTCGTGGCTTGCTAAGTTTTAGTTATTCTAGAGATGTTTGGCTAAAGGGTAGA 1067
||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1042 TTAACCATTTGTGGCTTGCTAAGTTT-AGTTCTTCTAGTGATGTTTGGCTAAAGGGTAGA 1100
Query 1068 TGTTGTTTCTTCTTA-CTTCTGTTGTTTAGCCG-TGTAAGTACCATCAAGAAA-CCAAAT 1124
|||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1101 TGTTGTTTCTTCTTTGCTTCTGTTGTTTAGCCAATGTAAGTACCATCAAAAAAACCAAAT 1160
Query 1125 GACTCTCTAAAGCTTCCTATTGGAAACTATCT-GTTCTGATACGATCTGGAGAGATGGGT 1183
||||||||||||| ||||||||||||||||| || |||||||||||||||| || |||
Sbjct 1161 AACTCTCTAAAGCTCCCTATTGGAAACTATCTTGT-CTGATACGATCTGGAGTGACCGGT 1219
Query 1184 ATGTT 1188
|||||
Sbjct 1220 ATGTT 1224
> AT1G75060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G19330.2);
Has 104 Blast hits to 104 proteins in 22 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28181275-28183503
REVERSE LENGTH=1153
Length=1153
Score = 586 bits (317), Expect = 2e-166
Identities = 601/731 (82%), Gaps = 48/731 (7%)
Strand=Plus/Plus
Query 245 GGAGGATTCCCACAGATACAGAGCTT--TTACGGCGATTGCAGTAGTGAAGAAGAGTTAT 302
||||||||| | ||| ||||||| || || ||||||||||||||| |||||||| || |
Sbjct 267 GGAGGATTCTCTCAGCTACAGAG-TTGCTT-CGGCGATTGCAGTAGCGAAGAAGAATTGT 324
Query 303 CAGTTTTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGTACGAAATCGGTGC 362
|||| |||||||||||||| ||||| || || || |||||||||||||| ||||| || |
Sbjct 325 CAGTGTTGCCACGTCATACCAAAGTTGTCGTTACTGGAAACAACCGTACCAAATCTGTTC 384
Query 363 TTGTTGGTCTTCAAGGTGTTGTTAAAAAAGCTGTCGGTCTCGGTGGTTGGCATTGGCTGG 422
| || ||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 385 TCGTCGGTCTTCAAGGCGTCGTTAAGAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGG 444
Query 423 TAAAGTTGACAAATGGCATAGAAGTAAAATTGCAGAGGAATGCGCTTAGTGTCCTTGAAC 482
| ||||| ||||| || ||||| || ||||||||||||||||||||||| |||||||
Sbjct 445 T---TTTGACTAATGGAATTGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAAC 501
Query 483 ATCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGA--AAAC-ACACAGAGG-A-- 536
||||||| || |||||||||||| |||||||||| |||| | | |||||| || |
Sbjct 502 ATCCTACAGGGAACGAAGAAGACAATGATCTTGAAGTCGACCATTCTACACAGTGGAATC 561
Query 537 ATGGCTCCGATATGATTGTTTCTTTTCCAGCATCTGAGGACACGCTGAAGCCTCATAAGT 596
|| ||||||||||| || | |||||||||| |||||||||||||||
Sbjct 562 ATCCCTCCGATATGA------------CA--A-CTGAGGACACTTTGAAGCCTCATAAGT 606
Query 597 CGAAGCAA-AGAGGGCAGAGATCATCGCGGTCATCTCACAAGACAATG-AGCA--GATCT 652
||||| || ||||| || ||||||||||||| |||||| ||| | || | || || |
Sbjct 607 CGAAG-AAGAGAGGACACAGATCATCGCGGTTATCTCAAAAGGCTTTGTA-CAGGGAAGT 664
Query 653 CTATCATCTGACTCGCAATCAAAAAGT-TCGGGTTTTACTCCCCGTGAAAACATGAAGGT 711
| || | |||||| || ||||||| | ||| || ||||||| ||| |||||||||||
Sbjct 665 -T-TCTTGTGACTCACACTCAAAAA-TCTCGAGTATTACTCCTCGTCTGAACATGAAGGT 721
Query 712 TGATCTAAGCAAATTGGAAATGCCCGCTTTACTGA-ATTATTGGCGACATTTTAACCTTG 770
|||||| | ||| ||||| ||| | || ||||||| | |||||||||||||||||||| |
Sbjct 722 TGATCTTACCAAGTTGGATATGGCTGCATTACTGAGA-TATTGGCGACATTTTAACCTCG 780
Query 771 TGGATGCAATTCCTAAT-CCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACTTC 829
||||||| |||| ||| ||| ||||||||||||||||||||||| |||| || ||||||
Sbjct 781 TGGATGCTCTTCCGAATCCCA-CAAAGGAGCAACTAATTGACATTATTCAGAGACACTTC 839
Query 830 ATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAA-AGAG 888
|||||||||||||||||||||||||||||||||||||| || || || ||||||| || |
Sbjct 840 ATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGATTCGTTCAGGCTGCAACAG-G 898
Query 889 AATGAAGAAGGCATGC-AAGTTGCA-ATCGAAAGAAGCCAGAAACACTGATC-TTAACTG 945
|||||||||||| ||| |||| | | | | |||||||||||||||||||||| |||||||
Sbjct 899 AATGAAGAAGGCTTGCCAAGTGGAAGACC-AAAGAAGCCAGAAACACTGATCCTTAACTG 957
Query 946 CATCAGCTAAA 956
|||||||||||
Sbjct 958 CATCAGCTAAA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5