BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472157
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19340.1 | Symbols: | Methyltransferase MT-A70 family prote... 1973 0.0
> AT1G19340.1 | Symbols: | Methyltransferase MT-A70 family protein
| chr1:6684751-6687116 FORWARD LENGTH=1610
Length=1610
Score = 1973 bits (1068), Expect = 0.0
Identities = 1268/1364 (93%), Gaps = 16/1364 (1%)
Strand=Plus/Plus
Query 31 AATGGCGAAAACTGATAAGCTAGCTCAATTCCTTGATTCGGGTATCCATGAATCCGACG- 89
||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 47 AATGGCGAAAACTGATAAGCTAGCTCAATTCCTTGATTCTGGTATCTACGAATCCGACGA 106
Query 90 ATTCCAATTGGTTCTTCTTAGACCCGGTTCGTATCACCAATCGTTCATATACCCGATTTA 149
||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 107 ATT-CAATTGGTTCTTCTTAGACACAGTTCGTATCACCAACCGTTCATATACCCGATTTA 165
Query 150 GGGTTTCACCTTCTGCTTATTACTCTCGTTTCTTCAATTCCAAGCAACTCAATCAACAAT 209
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 166 AGGTTTCACCTTCTGCTTACTACTCTCGTTTCTTCAATTCGAAGCAACTCAATCAACACT 225
Query 210 CCAGCGACTCTAATCCGAGAAAGCGAAAACGGAAGCAGAAAGACCCTAGCTTTCACCTTC 269
| ||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 226 CTAGCGAGTCTAATCCGAAAAAGCGAAAACGGAAGCAGAAAAACTCTAGCTTTCACCTTC 285
Query 270 CTAGTGTAGGAGAGCAAGCTTCGAATCTTCGTCATCAGGAAGCGAGGCTGTTCTTATCGA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTAGTGTAGGAGAGCAAGCTTCGAATCTTCGTCATCAGGAAGCGAGGCTGTTCTTATCGA 345
Query 330 AAGCCCATGAATCTTTTTTAAAGGACGTCGAGTTGGTGAATTTAACGAAAGGTCT-A--- 385
||||||||||||||||| ||||||| | |||||| ||| ||||||||||||||| |
Sbjct 346 AAGCCCATGAATCTTTTCTAAAGGAAATTGAGTTGTTGAGTTTAACGAAAGGTCTAAGTG 405
Query 386 A-G----TGATGATGAT--TT-TAGTTTGTTGAACAAGTGTTGTGACGATGAACTCTCTT 437
| | |||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 406 ATGATAATGATGATGATGATTCTAGTTTGTTGAACAAGTGTTGTGACGATGAAGTCTCTT 465
Query 438 TTATTGAGCTTGGAGGAGTGTGGCAAGCTCCTTTCTATGAGATAACACTGAATTTTAATC 497
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 466 TTATTGAGCTTGGAGGAGTGTGGCAAGCTCCTTTCTATGAGATAACACTGAGTTTTAATC 525
Query 498 TATGTTGCGACAATGAAGGCGAGACTTGCAATGAACAGAGAGTGTTTCAAGTGTTCAATA 557
|| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 526 TACATTGCGACAATGAAGGTGAGAGTTGTAATGAACAGAGAGTGTTTCAAGTGTTCAATA 585
Query 558 ACCTAGTAGTGAACGAGACTGGAGAAGAAGTGGAAGCTGAGTTTTCCAACCGGAGATATA 617
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 586 ACCTAGTAGTGAATGAGATTGGAGAAGAAGTTGAAGCTGAGTTTTCCAACCGGAGATATA 645
Query 618 TAATGCCTAGAAAGAGTTGCTTCTACATGTCTGATTTAC-TGCATATCCGAAACCTCGTT 676
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 646 TAATGCCCAGAAACAGTTGCTTCTACATGTCTGATTTACAT-CACATCCGAAACCTCGTT 704
Query 677 CCTGGTAAGTCTGAAGAAGGCTTCAATCTTATAGTTATTGATCCACCTTGGGAAAATGCA 736
|||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 705 CCTGCTAAATCTGAAGAAGGCTACAATCTTATAGTTATTGATCCGCCTTGGGAAAATGCA 764
Query 737 AGCGCTCATCAGAAATCAAAGTATCCTACTTTACCAAACCGATACTTCTTATCTCTCCCG 796
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 765 AGTGCTCATCAGAAATCAAAGTATCCTACTTTACCGAACCAATACTTCTTATCTCTTCCG 824
Query 797 ATCAAGCAGCTTGCTCATGCTGAAGGAGCTCTTGTGGCTTTATGGGTGACCAATAGAGAG 856
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 825 ATCAAGCAGCTTGCTCATGCTGAAGGAGCTCTCGTGGCTTTGTGGGTGACAAATAGAGAG 884
Query 857 AAATTACTTAGTTTTGTTGAGAAAGAGTTATTCCCTGCGTGGGGAGTCAAGTATGTAGCT 916
|||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 885 AAATTACTAAGTTTTGTTGAGAAAGAGCTATTCCCTGCGTGGGGAATTAAGTATGTAGCT 944
Query 917 ACAATGTATTGGTTGAAGGTGAAACCAGATGGTACACTGATTTGCGATCTGGACCTGGTC 976
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 945 ACAATGTATTGGTTAAAGGTGAAACCGGATGGTACACTGATTTGCGACCTGGACCTGGTC 1004
Query 977 CATCATAAACCTTATGAGTACCTTCTACTAGGCTACCGTTATACCGAATTTCCAGGATCA 1036
||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct 1005 CATCATAAACCTTATGAGTACCTTCTACTAGGCTACCATTTTACCGAACTTGCAGGATCA 1064
Query 1037 GAACATAGGTCAGATTTTAAACTCTTGGACAAGAACCAGATAATCATGAGCATCCCTGGA 1096
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GAAAAGAGGTCAGATTTTAAACTCTTGGACAAGAACCAGATAATCATGAGCATCCCTGGT 1124
Query 1097 GATTTTTCAAGGAAACCCCCAATTGGAGAGATACTAATGAAACACACTCCCGGGTCTCAA 1156
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1125 GATTTTTCGAGGAAACCCCCAATTGGAGATATACTACTGAAACACACTCCCGGGTCTCAA 1184
Query 1157 ACGGCTCGGTGCCTTGAGCTATTTGCTAGGGAAATGGCTACCGGATGGACCTCTTGGGGA 1216
| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1185 CCTGCTCGGTGCCTTGAGCTATTTGCGAGGGAAATGGCTGCCGGATGGACCTCTTGGGGA 1244
Query 1217 AATGAACCGCTTCACTTTCAGGACTCGAGATACTTTTTGAAAGATTAGTGGGCGCATTCC 1276
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1245 AACGAACCGCTTCACTTTCAGGACTCGAGATACTTTTTGAAAGTTTAGTGGGCGCATTCC 1304
Query 1277 CTAGGTTGTAGCCAAGGAAAAGACTGGCTTGGGCCCTCATGATTGtttttttCTGTGACT 1336
||||| |||| ||||| ||||| |||||||||||||||||||| |||||| ||| |||||
Sbjct 1305 CTAGGGTGTAACCAAGAAAAAGGCTGGCTTGGGCCCTCATGATCGTTTTTCTCTATGACT 1364
Query 1337 CATTGTCAAGCTGAAGACAGTGAGGAGAGAACCCTTGGAAGGAA 1380
|||| |||||||| |||||| |||||||||||||||||| |||
Sbjct 1365 CATTCTCAAGCTGGGGACAGTTAGGAGAGAACCCTTGGAAAGAA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5