BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472158
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19350.3 | Symbols: BES1, BZR2 | Brassinosteroid signalling ... 1997 0.0
AT1G75080.1 | Symbols: BZR1 | Brassinosteroid signalling positi... 968 0.0
> AT1G19350.3 | Symbols: BES1, BZR2 | Brassinosteroid signalling
positive regulator (BZR1) family protein | chr1:6688535-6690411
FORWARD LENGTH=1465
Length=1465
Score = 1997 bits (1081), Expect = 0.0
Identities = 1207/1266 (95%), Gaps = 15/1266 (1%)
Strand=Plus/Plus
Query 147 GAAGAAGATGACGTCTGACGGAGCAACGTCGACGTCA---GCAGCAGCAGCTGCAGCGAT 203
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 205 GAAGAAGATGACGTCTGACGGAGCAACGTCGACGTCAGCTGCAGCTGCAGCAGCAGCGAT 264
Query 204 GGCGACgaggaggaaaccgtcgtggagagagagggagaacaatcggagaagagagcggag 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 265 GGCGACGAGGAGGAAACCGTCGTGGAGAGAGAGGGAGAACAATCGGAGAAGAGAGCGGCG 324
Query 264 gagaagagCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAGAAGAGCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCT 384
Query 324 TCCAAAACATTGTGACAACAATGAGGTTCTCAAGGCTCTTTGTTCTGAAGCTGGTTGGGT 383
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 385 TCCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGTTCTGAAGCTGGTTGGGT 444
Query 384 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 504
Query 444 TGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTGTCTTCCAC 503
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 505 TGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCCAC 564
Query 504 TTTTGATAGCCCCATCCTATCTTACCAAGTCAGTCCCTCGTCTTCTTCGTTCCCGAGTCC 563
|||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||
Sbjct 565 TTTTGATAGCCCCATCTTATCTTACCAAGTCAGTCCTTCCTCTTCTTCATTCCCGAGTCC 624
Query 564 TTCTCGTGTTGGCGATCCACACAACATCTCCACAATCTTCCCTTTCCTCAGGAATGGCGG 623
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 625 TTCTCGAGTTGGTGATCCACACAATATCTCCACAATCTTCCCTTTCCTCAGGAATGGTGG 684
Query 624 GATTCCTTCATCGCTTCCTCCGCTTAGAATCTCAAACAGTGCTCCAGTCACTCCTCCAGT 683
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 685 TATTCCTTCATCGCTTCCTCCACTTAGAATCTCAAACAGTGCTCCTGTCACTCCACCAGT 744
Query 684 CTCATCTCCAAATTCTAGAAACCCCAAACCATTGCCTACTTGGGAATCTTTTACCAAACA 743
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTCATCCCCAACTTCTAGAAACCCCAAACCATTGCCTACTTGGGAATCTTTTACCAAACA 804
Query 744 ATCCATGTCCATGGCTGCTAAACAATCAATGACTTCTTTGAACTATCCGTTTTATGCGGT 803
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 805 ATCCATGTCCATGGCTGCTAAACAGTCAATGACTTCTTTGAACTACCCGTTTTATGCGGT 864
Query 804 TTCTGCACCTGCTAGTCCCACCCATCATCGCCAGTTCCATGCCCCGGCTACTATACCTGA 863
||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 865 GTCTGCACCTGCCAGTCCTACTCATCATCGCCAGTTCCATGCTCCGGCTACTATACCTGA 924
Query 864 ATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTT 923
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 925 ATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAGCTTTCAAAAGTT 984
Query 924 TGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACTTTCAATCTCGT 983
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 985 TGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCGCCTACCTTCAATCTCGT 1044
Query 984 GAAACCTGCACCTCAGCAATTATCTCCAAACACTGCAGCGACCCAAGAGATTGGTCAAAG 1043
|||||||||||| |||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1045 GAAACCTGCACCACAGCAATTGTCTCCAAACACAGCAGCAATCCAAGAGATTGGTCAAAG 1104
Query 1044 CTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAACCATGGGAAGGGGAGAGGATTCATGA 1103
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1105 CTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAGCCATGGGAAGGGGAGAGGATCCATGA 1164
Query 1104 TGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAAGCTCATAGTTGAGATG 1163
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1165 TGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAA-GCTCATAGTTGAGATG 1223
Query 1164 AAGTACT-CAGGAACCCGTTATGTCATGTCGTCGGAAGGAAGGATTGGAG--TC----TT 1216
||||| | || ||||| |||||||||||||| | ||||||||||||||| | ||
Sbjct 1224 AAGTA-TACATGAACCTGTTATGTCATGTCG--G-AAGGAAGGATTGGAGAATGAGAATT 1279
Query 1217 AGTTTGTTGTTCATTCAGTTCATGGTTTTGGTTCTTGTTCTAGAATCGATATTCATTGTA 1276
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AGTGTGTTGTTCATTCAGTTCATGGTTTTGGTTCTTGTTCTAGAATCGATATTCATTGTA 1339
Query 1277 CCAGTGAGTTTGTTTCATAACGCATTATTTGTAGATAGAATGTTTAAGATGTATGTTTCT 1336
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 CCAGTGAGTTTGTTTCACAACGCATTATTTGTAGATAGAATGTTTAAGATGTATGTTTCT 1399
Query 1337 ATTATCATTCCTTTTAGGTCTTGAAAACATTACAAATATATTACATTATTAAGTGGCTTG 1396
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1400 ATTATCATTCCTTTTAGGTCTTGAAAACATTACAAATATATTACATGATTAAGTGGCTTG 1459
Query 1397 AAATGT 1402
||||||
Sbjct 1460 AAATGT 1465
> AT1G75080.1 | Symbols: BZR1 | Brassinosteroid signalling positive
regulator (BZR1) family protein | chr1:28185504-28187410
FORWARD LENGTH=1563
Length=1563
Score = 968 bits (524), Expect = 0.0
Identities = 896/1071 (84%), Gaps = 43/1071 (4%)
Strand=Plus/Plus
Query 153 GATGACGTCTGACGGAGCAACGTCGACGTCAGCAGCAGCAGCTGCAGCGATGGC-G-A-- 208
|||||| || || ||||| |||||||| |||||||| |||||||| ||| ||| | |
Sbjct 205 GATGACTTCGGATGGAGCTACGTCGACATCAGCAGCTGCAGCTGCGGCGGCGGCAGCAGC 264
Query 209 --Cgaggaggaaaccgtcgtggagagagagggagaacaatcggagaagagagcgga-gga 265
|||||||||| |||||||||||||| |||||||| |||||||| ||||| || |||
Sbjct 265 GGCGAGGAGGAAGCCGTCGTGGAGAGAAAGGGAGAATAATCGGAGGAGAGA-AAGACGGA 323
Query 266 gaagagCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCTT- 324
|||||||||| || |||||||| || ||||| ||||||||||||||| | || ||| ||
Sbjct 324 GAAGAGCTGTAGCTGCGAAGATATACACTGGGCTTAGAGCTCAAGGTGATTATAAT-TTG 382
Query 325 CCAAAACATTGTGACAACAATGAGGTTCTCAAGGCTCTTTGT-TCTGAAGCTGGTTGGGT 383
|| ||||||||||| || ||||| || || || ||||||||| | |||||||||||||||
Sbjct 383 CCTAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGT-TGAAGCTGGTTGGGT 441
Query 384 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 443
|||||||||||| || |||||||||||||||||| ||||||| |||||||||| || ||
Sbjct 442 TGTTGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATAGC 501
Query 444 T-GGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTGTCTTCCA 502
| ||| | || ||||||| |||||| || || || || ||||| || ||||| || | ||
Sbjct 502 TGGGA-CTTCATCTCGAGTAACTCCATATTCATCACAGAACCAGAGCCCTCTTTCAT-CA 559
Query 503 -CTTTTGATAGCCCCATCCTATCTTACCAAGTCAGTCCC-TCGTCTTCTTCGTTCCCGAG 560
| ||| | || ||||||| |||||||||||| || ||| || ||||| || ||||||||
Sbjct 560 GCCTTTCAAAGTCCCATCCCATCTTACCAAGTTAG-CCCGTCTTCTTCATCATTCCCGAG 618
Query 561 TCCTTCTCGTGTTG-GCGATCCACACAACA--T-CTCCACAATCTTCCCTTTCCTCAGGA 616
||||||||| | || | | | |||||| | ||| ||| |||||||||||||||| |
Sbjct 619 TCCTTCTCGCGGTGAACCAAATA-ACAACATGTCCTCTACATTCTTCCCTTTCCTCAGAA 677
Query 617 ATGGCGGGATTCCTTCATCGCTTCC-TCCGCTTAGAATCTCAAACAG-TGCTCCAGTCAC 674
|||| || |||||||| || ||||| ||| || |||||||||||||| || |||||| ||
Sbjct 678 ATGGTGGCATTCCTTCTTCTCTTCCTTCC-CTCAGAATCTCAAACAGTTG-TCCAGTTAC 735
Query 675 TCCTCCAGTCTCATCTCCAAATTCT-AGAAACCCCAAACCATTGCCT-ACTTGGGAATCT 732
|| || |||||||| || | |||| || ||||| ||||| |||||| || |||||||||
Sbjct 736 CCCACCGGTCTCATCGCCGACTTCTAAG-AACCCGAAACCGTTGCCTAAC-TGGGAATCT 793
Query 733 TTTACCAAACAATCCATGTCCATGGCTGCTAAACAATCAATGACTTCTTTGAACTATCCG 792
| | || ||||||||| |||| |||||||||||||||| | ||||| || |||||
Sbjct 794 ATCGCTAAGCAATCCATGGCCAT---TGCTAAACAATCAATGGCGTCTTTTAATTATCC- 849
Query 793 TTT-TATGCGGTTTCTGCACCTGCTAGTCCCACCCATCATCGCCAGTTCCATGCCCCGGC 851
||| |||||||||||||||||||||||||| || |||| | |||||| ||| |||||||
Sbjct 850 TTTCTATGCGGTTTCTGCACCTGCTAGTCCGACACATCGCCACCAGTTTCATACCCCGGC 909
Query 852 TACTATACCTGAATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAG 911
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 910 TACTATACCTGAATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAG 969
Query 912 CTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTAC 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 CTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTAC 1029
Query 972 TTTCAATCTCGTGAAACCTGCACCTCAGCA-ATTATCTCCAAACACTGCAGCGACCCAAG 1030
|||||||| ||||||||||| |||||||| || |||||||| ||||| || |||||
Sbjct 1030 CTTCAATCTTGTGAAACCTGCGCCTCAGCAGATG-TCTCCAAATACTGCTGCCTTCCAAG 1088
Query 1031 AGATTGGTCAAAGCTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAACCATGGGAAGGGG 1090
|||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |
Sbjct 1089 AGATTGGTCAAAGCTCTGAGTTTAAATTTGAGAATAGCCAAGTTAAACCCTGGGAAGGAG 1148
Query 1091 AGAGGATTCATGATGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAAGCT 1150
||||||| |||||||||| |||||||||||| ||||| || ||||||||||| || |||
Sbjct 1149 AGAGGATACATGATGTGGGTATGGAGGATCTTGAGCTTACACTTGGAAATGGGAAG-GCT 1207
Query 1151 CATAGTTGAGATGAAGTACTCAGG-AA-CCCGTTATGTCATGTCGTCGGAA 1199
| | ||||| || || ||| ||| || ||| ||| |||||| | ||||
Sbjct 1208 CGTGGTTGACATAAACAACT-AGGCAAACCCAA-ATGGCATGTCATTGGAA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5