BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472163
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19360.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 2651 0.0
AT1G75110.1 | Symbols: RRA2 | Nucleotide-diphospho-sugar transf... 1003 0.0
> AT1G19360.1 | Symbols: | Nucleotide-diphospho-sugar transferase
family protein | chr1:6690456-6692477 REVERSE LENGTH=1769
Length=1769
Score = 2651 bits (1435), Expect = 0.0
Identities = 1656/1758 (94%), Gaps = 34/1758 (2%)
Strand=Plus/Plus
Query 1 TCGTCGTCTTCGGAGACGAAGCCCAAACACACAAGCTCTCTCTTTCTCTCAACAACTTCA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 26 TCGTCGTCTTCGGAGACGAAG-CCAAACACACAAGCTCTCTCTTTCTCTCAACAACTTCA 84
Query 61 AAAGCCGGAAGGTCTGACCCGAGACCTCCGAA-TAAAACAGAACATTTCTAGGGTTTTGC 119
|||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 85 AAAGCCGGCAGGTATGA-CCGAGACCTCCGAAGAAAAACAGAACATTTCTAGGGTTTAAC 143
Query 120 TCTGATCCACCACATTACCAAAACTTTCTTCAA-TAAGGTGATaaaaaaaGGAGTCTTTT 178
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||
Sbjct 144 TCTGATCCACCACATTACCAAAACTTTCTTCAACT-AGGTGAT-CAAAAAGGAGTCCTTT 201
Query 179 TTCATTTTGAGCTTCTGGGTC-TTGGCTTCTGATTTCGCTAGTGAAGGGAAGAGAAAAGT 237
||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||
Sbjct 202 TTCATTTTGAGCTTCTGGGTCTTTGGCTTCTGATTTCGCTA-T-AA-GGAAGAGAAAAGT 258
Query 238 CAACGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAGCTCCGTGGATCTCGAATTGCGA 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 259 CAACGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAACTCCGTGGATCTCGAATTGCGA 318
Query 298 TCGCCATCCTCATCGGTATCTTTATCGGTTGCGTGTGCGCCGTTATGTTCCCATACGGCT 357
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 319 TCGCCATCCTCATCGGTATCTTTATCGGTTGCGTGTGCGCCGTTCTGTTCCCTTACGGGT 378
Query 358 TCTTCAACTCAAGCTCATCTCTGAAAGTAAACGAACGTCTTTCGAAATCAAGTGACCAGG 417
|||||||||||||||||||||| |||| || ||||| ||||||||| ||||| ||||||
Sbjct 379 TCTTCAACTCAAGCTCATCTCTCAAAGCAAGCGAACATCTTTCGAAGTCAAGCAACCAGG 438
Query 418 TTGGATCATCAGCTTGTGAATCGCCGGAACGAGTGAATATGCTAAAATCAAACTTTGCAT 477
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |
Sbjct 439 TTGGATCATCAGCTTGTGAATCGCCAGAACGAGTGAAAATGCTAAAATCAGACTTTGTAA 498
Query 478 CTCTCTCAGAGAAGAATGCAGAGTTAAAGAAGCAAGTCAGAGAGTTAACAGAGAGGCTAC 537
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 499 CTCTCTCAGAGAAGAATGCAGAGTTAAAGAAGCAGGTCAGAGAGTTAACAGAGAAGCTAC 558
Query 538 GGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTCTAGCTTTGGGAACACAGA 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 559 GGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTCTAGCATTGGGAACACAGA 618
Query 598 TCAAGGCGGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAACTATCCTTTCC- 656
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 619 TCAAGGCTGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAACTATTC-TTCCT 677
Query 657 GATGAATCTATAAACCCTAGATTGGGAAAGATTCTAGAAGAGATTGCTGTCGATAAAGAG 716
||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 678 GATGAATCTATAAACCCAAGATTGGCAAAGATTCTAGAGGAGATTGCTGTTGATAAAGAG 737
Query 717 GTAATCGTGGCTCTTGCAAATGCAAATGTGAAAGCTATGTTGGAGGTTCAGATTGCTAGC 776
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 738 GTAATTGTAGCTCTTGCAAACGCAAATGTGAAAGCAATGTTGGAGGTTCAGATTGCTAGC 797
Query 777 ATTAAGAGAGTGGGTATAACAAACTACCTGGTTGTTGCATTGGACGATTACATAGAGAAT 836
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 798 ATTAAGAGAGTGGGTATAACAAACTATCTGGTTGTTGCTTTGGACGATTACATAGAGAAT 857
Query 837 TTCTGTAAAGAGAAAGATGTTGCGTATTACAAGAGAGATCCAGACAAGGACGTGGACACT 896
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 858 TTATGTAAAGAGAACGATGTTGCGTATTACAAGAGAGATCCAGACAAGGACGTGGATACT 917
Query 897 GTCGGGAAAAGC-GGAGGTAACCATGCCGTCTCTGGATTGAAATTCCGTGTGTTGAGAGA 955
|| ||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 918 GTTGGGAAAA-CTGGAGGTAACCATGCTGTCTCTGGATTGAAATTCCGTGTGTTAAGAGA 976
Query 956 GTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCCGATGTGGATATTGTCTTCTTGCAGAA 1015
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 977 GTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCGGATGTGGACATTGTCTTCTTGCAGAA 1036
Query 1016 CCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATGAGTGATGGCCATAACAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1037 CCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATGAGTGATGGCCATGACAA 1096
Query 1076 TCATACGGCTTATGGATTCAACGATGTGTTTGATGAACCAGCCATGGGATGGGCTCGGTA 1135
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TCATACGGCTTATGGGTTCAATGATGTGTTTGATGAACCAGCCATGGGATGGGCTCGGTA 1156
Query 1136 TGCTCACACTATGAGGATATGGGTTTTCAATTCGGGGtttttttATCTAAGGCCTACAAT 1195
||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||
Sbjct 1157 TGCTCACACTATGAGGATATGGGTTTTCAATTCCGGGTTTTTCTATTTGAGGCCTACAAT 1216
Query 1196 TCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCTAAGGCTAAAGTGTGGGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCTAAGGCTAAAGTGTGGGA 1276
Query 1256 CCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATCCTAATTATACTGCGCTACA 1315
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1277 CCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATCCTGAGTACACTGCGCTACA 1336
Query 1316 TGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAACAGTAAGGTCCTTTTCAAGAC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAACAGTAAGGTCCTTTTCAAGAC 1396
Query 1376 TGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACCGGTGATTGTTCATGTGAATTA 1435
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1397 TGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACCAGTGATTGTTCATGTGAATTA 1456
Query 1436 CCATCCAGATAAGCTCAATAGAATGCAAGCCGTCGTTGACTTCTACGTTAACGGTAAGCA 1495
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1457 CCATCCAGATAAGCTCAATAGAATGCAAGCCGTCGTTGAGTTCTACGTTAACGGTAAGCA 1516
Query 1496 AGACGCACTTGATAGCTTCCCAGATGGTTCTGAATGATTCAC-TGAAAAGCAGATAGGCT 1554
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1517 AGACGCGCTTGATAGCTTCCCCGATGGTTCTGAATGATTCACCTGAAAAGCAGATAGGCT 1576
Query 1555 AAAACA--CTTTCCGAGTTTCTTGACATTTGTGATTCTAATCTATTTTTCCTTTATTGTT 1612
|||| | ||||||||||||||||||||||||||||||||| ||||| ||| || ||
Sbjct 1577 AAAAAAAACTTTCCGAGTTTCTTGACATTTGTGATTCTAATATATTTCTCCCTT-TT--- 1632
Query 1613 TCCA-TGTTTACTGCTTCATGCCTTTTATTTTC-TCCTTTGTATTATGAATTTTTGTGTA 1670
||| |||||||||||||||||||| || |||| || |||||||||||||||||||||||
Sbjct 1633 -CCAATGTTTACTGCTTCATGCCTTCTACTTTCCTC-TTTGTATTATGAATTTTTGTGTA 1690
Query 1671 TCTTATGGCTAAAATCGAAAGTCtttttttt-t-----AACCTCTCTGATCTTGTTA--- 1721
||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1691 TCTTATGGCTAAAATCGCAAGTCTTTTTTTTCTTTCTTAACCTCTCTGATCTTGTTATTA 1750
Query 1722 CATCGCAAGTCTTTGTTT 1739
|||| |||||||||||||
Sbjct 1751 CATCCCAAGTCTTTGTTT 1768
> AT1G75110.1 | Symbols: RRA2 | Nucleotide-diphospho-sugar transferase
family protein | chr1:28194115-28195933 REVERSE LENGTH=1568
Length=1568
Score = 1003 bits (543), Expect = 0.0
Identities = 1072/1322 (81%), Gaps = 58/1322 (4%)
Strand=Plus/Plus
Query 241 CGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAGCTCCGTGGATCTCGAATTGCGATCG 300
|||| ||||||||||| ||||| || | |||||||||||||||||||||||||||||| |
Sbjct 44 CGGCAATGGCGGGTCGCAGAGACAGGATCCAACAGCTCCGTGGATCTCGAATTGCGATTG 103
Query 301 CCATCCTCATCGGTA-TCTTTATCGGTTGCGTGTGCGCCGT-TATGTTCCC-ATACGGCT 357
||||| | |||| | || ||||||| || || || |||| | ||||||| | ||||||
Sbjct 104 CCATCTTTGTCGGAATTC-TTATCGGCTGTGTCTGTTCCGTCT-TGTTCCCGA-ACGGCT 160
Query 358 TCTTCAACTCAAGCTCAT-CTCTGAAAG-TAA--ACGAACGTC-TTTCGAAATCAAGTGA 412
|||| ||||| | |||| || ||| | ||| | ||||| | ||||||||||||
Sbjct 161 TCTTTAACTCGGGATCATCCT-TGATTGCTAACGAAGAACG-CATTTCGAAATCAA-CCT 217
Query 413 CCA-GGTTGGATCATCAGCTTGTGAATCGCCGGAACGAGTGAATATGCTAAAATCAAACT 471
| | || ||||| | | |||||||| | |||||||| || ||||| |||||| |||
Sbjct 218 CTACGGATGGATTGGCTTCATGTGAATCATCTGAACGAGTCAAAATGCTCAAATCAGACT 277
Query 472 TTGC-ATCTCTCTCAG-AGAAGAATGCAGAGTTAAAGAAGCAAGTCAGAGAGTTAACAGA 529
|| | || | |||| | | ||||| |||||||||| |||||| || ||||| |||| ||
Sbjct 278 TTTCAAT-TATCTCGGTA-AAGAACGCAGAGTTAAGGAAGCAGGTAAGAGAACTAACGGA 335
Query 530 G-AGGCTACGGTTAGCGGAGCAAGG-ATCAGACAATGCAAGAAAACAGGTTC-TAGCTTT 586
| ||| ||||||| ||||| | ||| | |||| |||||||| ||||| | || ||| |||
Sbjct 336 GAAGG-TACGGTTGGCGGAAC-AGGAAACAGAGAATGCAAGGAAACAAG-TCTTAGTTTT 392
Query 587 GGGAACACAGATCAAGGC-GGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAA 645
|||| || |||| ||||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 393 GGGATCAGAGATAAAGGCAGGG-CCTTTTGGTACTGTCAAGAGTCTGAGAACTAATCCAA 451
Query 646 CTATCCTTTCC-GATGAATCTATAAACCCTAGATTGGGAAAGATTCTAGAAGAGATT-GC 703
|| | || || ||||| ||| | ||||| ||||| | ||| || |||| || | | ||
Sbjct 452 CTGTTGTT-CCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTAGA-GAAAGTAGC 509
Query 704 TGTCGATAAAGAGGTAATCGTGGCTCTTGCAAATGCAAATGTGAAAGCTATGTTGGAGGT 763
|||| |||||||| | || |||| |||||||||| ||||||||||| | ||||||||| |
Sbjct 510 TGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCAATGTTGGAG-T 568
Query 764 T-CAGATTGCTAGCATTAAGAGAGTGGGTATAACAAA-CTACCTGGTTGTTGCATTGGAC 821
| ||||||||||| | |||||||| ||||| |||| |||||| |||| || |||||
Sbjct 569 TGCAGATTGCTAGTGTAAAGAGAGTTGGTATT-CAAAACTACCTCATTGTCGCGTTGGAT 627
Query 822 GATTACATAGAGAA-TTTCTGTAAAGAGAAAGATGTTGCGTATTACAAGAGAGATCCAGA 880
|||| ||| || || |||||| || ||| || |||| || ||||||| ||||||||||
Sbjct 628 GATTCCATGGA-AAGTTTCTGCGAATCGAAGGAGGTTGTGTTTTACAAGCGAGATCCAGA 686
Query 881 CAAGG-ACGTGGACACTG-TCGGGAAAAGCGGAGGTAACCATGCCGTCTCTGGATTGAAA 938
|| | | ||||||| || | || |||||||||||||| || || || || ||| ||||
Sbjct 687 TAAAGCA-GTGGACA-TGGTTGGAAAAAGCGGAGGTAATCACGCTGTTTCCGGACTGAAG 744
Query 939 TTCCGTGTGTTGAGAGAGTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCCGATGTGGAT 998
||||| || || |||||||||||||| || ||||| |||||||||| || ||||||||
Sbjct 745 TTCCGCGTCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGATGTGGAC 804
Query 999 ATTGTCTTCTTGCAGAACCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATG 1058
||||||||||||||||| || ||||||||| || |||||||||||||||| |||||||||
Sbjct 805 ATTGTCTTCTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTGAGTCAATG 864
Query 1059 AGTGATGGCCATAACAATCATACGGCTTATGGATTCAACGATGTGTTTGATGAACCAGCC 1118
|||||||| || ||||| | ||||||||||| |||||||||||||||||||||||| |
Sbjct 865 AGTGATGGTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGAACCATCA 924
Query 1119 ATGGGATGGGCTCGGTATGCTCACACTATGAGGATATGGGTTTTCAATTCGGGGtttttt 1178
|||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 925 ATGGGATGGGCTAGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTTC 984
Query 1179 tATCTAAGGCCTACAATTCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCT 1238
|||||||| || || ||||| ||||| || || || ||||| |||||||||| |||||||
Sbjct 985 TATCTAAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATACACTCTCT 1044
Query 1239 AAGGCTAAAGTG--TGGGACCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATC 1296
||| | | || | |||||||||||||||||||||||| |||| ||||| ||||| ||||
Sbjct 1045 AAGTC-AGAG-GCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCATC 1102
Query 1297 CTAAT-TATACTGCGCT-ACATGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAA 1354
| | || |||| ||| ||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 1103 C-AGGGTACACTG-GCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCATGAA 1160
Query 1355 CAGTAAGGTCCTTTTCAAGACTGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACC 1414
||||||||| || ||||| || || ||||||||||| |||||||||||| |||| ||
Sbjct 1161 CAGTAAGGTACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGT---TGAAGCC 1217
Query 1415 GGTGATTGTTCATGTGAATTACCATCCAGATAAGCTC-AATAGAATGCAAGCCGTCGTTG 1473
|||||||| ||| | ||||||||||||||||| ||| || ||||||| || || || |
Sbjct 1218 AGTGATTGTGCATCTCAATTACCATCCAGATAAACTCGAAC-GAATGCACGCTGTGGTAG 1276
Query 1474 ACTTCTACGTTAACGGTAAGCAAGACGCACTTG-ATAGCTT-CCCAGATGGTTCTGAATG 1531
| ||||||||||| || || ||||| || ||| ||||||| ||| |||||||| || ||
Sbjct 1277 AGTTCTACGTTAATGGCAAACAAGATGCG-TTGGATAGCTTTCCC-GATGGTTCAGATTG 1334
Query 1532 AT 1533
||
Sbjct 1335 AT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85993533585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5