BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472165
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19380.1 | Symbols: | Protein of unknown function (DUF1195)... 778 0.0
> AT1G19380.1 | Symbols: | Protein of unknown function (DUF1195)
| chr1:6698058-6698824 FORWARD LENGTH=677
Length=677
Score = 778 bits (421), Expect = 0.0
Identities = 496/532 (93%), Gaps = 6/532 (1%)
Strand=Plus/Plus
Query 1 AAAATGAAGTTTGAAGAATCGAAAACGCTCTTACCGGTGAGAAAACCTGTTAAT-G--AC 57
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 69 AAAATGAAGTTTGATGAATCGAAAACGCTCTTACCGGTGAGAAAACCTGTAAATGGCAAC 128
Query 58 CGCAAATCCGCTGGTTACAAACTTTGGGTTCTAATCGCAGTTCTACTCTTGGCCTTTGGT 117
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 129 CGCAAAACCGCTGGTTACAAGCTTTGGGTTCTAATCGCTGTTCTACTCTTGGCCTTTGGT 188
Query 118 TCTATGTTAACCGCTTCAGTCTCTCTCAAAGGAATCGGTTTGTTCCATTCTGTTGACGGC 177
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 189 TCTATGTTAACCGGTTCCGTCTCTCTCAAAGGAATCGGTTTGTTCCATTCTGCTGACGGC 248
Query 178 ACTAACGCATTCTCCGTCGGCGATGATCTCGACGTTCTGGAAATTGAGGAGAGAGAGAAA 237
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 249 GTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGGAAATTGAAGAGAGAGAGAAA 308
Query 238 GTGGTGAGGCAGATGTGGGATGTGTACGGACGCTCCGGCGGCGTTAAGGTTCCTCGTTTC 297
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 309 GTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTC 368
Query 298 TGGCGAGAAGCTTTCGAAGCGGCGTATGAGTTTCTGATCAGTGATTCC-CCTGCCGTTCG 356
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 369 TGGCGAGAAGCTTTCGAAGCGGCGTATGAGTTTCTCATCAGTGATTCCGCC-GCCGTTCG 427
Query 357 CAACGGTGCCGTTTCCGATATAGCAAAGTTGTCTCTTGTTCGTTTTGTTAAGTCAGAGTC 416
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 428 AAATGCTGCCGTTTCCGATATCGCAAAGTTGTCTCTTGTTCGTTTTGTTAAGTCAGAGTC 487
Query 417 CACGCCGGCCCAGCCCAATCCTCGTTGACTTGTGAAGCCCATGAGAATCACATAAGATTT 476
|| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 488 TACTTCGGCCCAGCCCAATCTTCATTGACTTGTGAAGCCCATGAGGATCACATAAGATTT 547
Query 477 TAATTGTATATAGGATTAAATATTTAATACCGAAAAATGTAACCTTAATAAT 528
|||||||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct 548 TAATTGTATATAGGATTAAATATTAAATACCGAATA-TGTAGCCTTAATAAT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26423161322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5