BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472167
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19400.1 | Symbols: | Erythronate-4-phosphate dehydrogenase... 1736 0.0
> AT1G19400.1 | Symbols: | Erythronate-4-phosphate dehydrogenase
family protein | chr1:6712038-6714247 REVERSE LENGTH=1667
Length=1667
Score = 1736 bits (940), Expect = 0.0
Identities = 1090/1159 (94%), Gaps = 23/1159 (2%)
Strand=Plus/Plus
Query 122 GTTTTTGGAGTGAGAATTAACTTTGGGTTGTTGATTCTCTTCCTCTGGTCATGGAGGAGC 181
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 522 GTTTTTGGAGTGAGAATTAAGTTTGGATTGTTGATTCTCTTCCTCTGGTCATGGAGGAGC 581
Query 182 CTTGTGAGACACTTGACAATGGTGAAGCCTATCAAATATCTAGATATCATAACTATAACC 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTTGTGAGACACTTGACAGTGGTGAAGCCTATCAAATATCTAGATATCATAACTATAACC 641
Query 242 AACACAGCTCCAGAAGCTTATCACCCTGGTTGGATTTGAGAGTGTTCTATGTCCGGATAA 301
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 642 AACACAGCTCCAGAAGCTCATCTCCCTGGTTGGATTTGAGAGTGTTCTATGTCCGGATAA 701
Query 302 GCAGTTTCATGGTGGAAGATTCAACTCCTGAAGTCCTCACTATCAATCACATTCCTCTGG 361
||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 702 GCAATTTCGTGGTGGAAGATTCAACTCCTGAGGTCCTCACTATCAATCACATTCCTCTGG 761
Query 362 ATCCAGATACGCTTTTGGAGATTAACGGTGTTAGGATGGGAATGTACTCAGAAGGAGGTT 421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 762 ATCCAGATACGCTTTTGGAGATTAACGGTGTTAGAATGGGAATGTACTCAGAAGGAGGTT 821
Query 422 CTTCACAGCTTAGGAGAGATCGGGTTGATAAGAAATGTGAAGAAGCTACTTATGTCAGCA 481
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 822 CTTCACAGCTTAGGAGAGATCGGGTTGATAAGAAATCTGAAGAAGCTACTTATGTCAGCA 881
Query 482 CTGACAATATCAGGTTAACGGGTAGTGTGAAGTTTGAGGTTTTTGACAAAACTGAGCTAG 541
| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 882 CAGACAATATCAGGTTAACTGGTAGTGTGAAGTTTGAGGTTTATGACAAAAATGAGCTAG 941
Query 542 TCTTGTCTGGAACTCTTGAGATGTGTGGTAGTAATGGTTTCACTGGGGAATCAAAGAATC 601
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 942 TTTTGTCTGGAACTCTTGAGATGTCTGGTAGTAATGGTTTCACTGGGGAATCAAAGAATC 1001
Query 602 GATGGAAGATGAATTGCGAGGCTGAGATCAGTGCAGGGTCTGGTTTCTTTAAGGAGAAGA 661
||||||| |||||||| ||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 1002 GATGGAAAATGAATTGTGAGGCTGAGGTCACTGCAGGGTCTGGTTTCCTTAAGGAGAAGA 1061
Query 662 GCATTAACGGTCAAGAGTTATCGTCCCCATTGCCAACTATCGAGGTCTATGTTACTGGTT 721
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1062 GCATAAACGGTCAAGAGTTATCGTCTCCATTGCCAACTATCGAGGTCTATGTTACTGGTT 1121
Query 722 GCTTCTCAGGAACACCCATCATCTTAACCAAGACTCTGCAACTTGGTTTGAGAAAGAAGC 781
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1122 GCTTCTCAGGAACACCCATCATCTTAACCAAGACTCTGCAACTTGGTTTGAAAAAGAAGC 1181
Query 782 AGAGTAGAAGAATGGCATTGGATTCAATTCCTGAGTATGAAACTGCAGAACCTCAGAAAG 841
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1182 AGAGTAGAAGAATGGCATTGGATGCAATTCCTGAGTATGAAACTGCAGAGCCTCAGAAAG 1241
Query 842 AGTACACCTCCTCTGCGCTTGATCTTCAGGCAACA---GAGTACGCGAACTACAAAGAGG 898
| |||||||| ||| |||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 1242 A---CACCTCCTATGCACTTGATCTTCAGGCAACAACAGAGTACGGGAATTACAAAGAGG 1298
Query 899 AATACGAAGGAGACATGTATTGGAGAAGTGAGTGCATAGATGGAGAGATGACATGGTTTA 958
||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 1299 AATACGAAGGAGACATGTATTGGAGAAGTGAGTGCATTGATGGGGAGATGTCATGGTTTA 1358
Query 959 ATGCAGGTGTAAGGGTTGGTGTTGGGATAGGACTTGGTGTCTGTGTTGGTCTTGGGATTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 ATGCAGGTGTAAGGGTTGGTGTTGGGATAGGACTTGGTGTCTGTGTTGGTCTTGGGATTG 1418
Query 1019 GTGTCGGTCTTCTAGTTCGTACTTATCAATCAACAACCAGAACCTTCAGGAGGAGGCTTC 1078
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1419 GTGTCGGTCTTCTCGTTCGTACTTATCAATCAACTACCAGAACCTTCAGGAGGAGGCTTC 1478
Query 1079 TCTAGTTTAGTAATACACACATTTGCACCt-ttttttt-ACCTTGAAATTTTGAAAGAAT 1136
||||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1479 TCTAGTTTAGTAATATATACATTTGCACCTCTTTTTTTTACCTTGCAATTTTGAAAGAAT 1538
Query 1137 -CATCTTTTTAAAACCGTTTGTATTTGGGTGTGATGTGAATTAAACACATTGGTGTGTGG 1195
| ||||||| || ||||||||||||||||||||| |||||| |||||||||||
Sbjct 1539 TC-TCTTTTT-------TT-GTATTTGGGTGTGATGTGAATCAAACACTTTGGTGTGTGG 1589
Query 1196 ATATGTTTGGTA-T-TT-GTTTTGCTGTAAATAAACGAGTGAGAATGTAGCTT-TTTTGT 1251
||||| | |||| | || ||||||||||||||||| || ||||| ||||| || ||||||
Sbjct 1590 ATATGAT-GGTACTATTTGTTTTGCTGTAAATAAAGGAATGAGAGTGTAGTTTCTTTTGT 1648
Query 1252 TTTCAGAATTTGGCTGATG 1270
||||||||||||||||||
Sbjct 1649 ATTCAGAATTTGGCTGATG 1667
Score = 128 bits (69), Expect = 1e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1 TACACTACGAGACTCGACGAGTCAATTTTAACCAGATTTAGAGGATTTGTGGATGTGATT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TACACTAGGAGACTCGACGAGTCAATTTTAACCAGATTTAGAGGATTTGTGGATGTGATT 69
Query 61 TCTTCTTTTGGT 72
||||||||||||
Sbjct 70 TCTTCTTTTGGT 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5