BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472168
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19410.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 924 0.0
AT2G26860.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 91.6 2e-17
> AT1G19410.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr1:6714492-6716439 REVERSE LENGTH=1308
Length=1308
Score = 924 bits (500), Expect = 0.0
Identities = 734/838 (88%), Gaps = 51/838 (6%)
Strand=Plus/Plus
Query 1 ATGGACAAGATCAATACTGATGACTTGCTGGTGAAGATATTATCATTTCTTCCAACAAAA 60
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAAAAGATCAATACTGATGACTTGCTGGTGAAGATTTTATCATTTCTTCCAACAAAA 60
Query 61 GTTGCTGT-ATCAACTAGCATTTTGTCTAAACGATGGAAGTTTCATTGGATGCGGGTGCC 119
|||||||| | | |||||||||||||||||||| |||||||||| || | || || |
Sbjct 61 GTTGCTGTGA-CCACTAGCATTTTGTCTAAACG-TGGAAGTTTC-TT---T--GGTTG-C 111
Query 120 AAAGCTTGAGACATTGCCACTGCATAGAGTTCCCGTTTTGGAACGCTTGCGTCTCGAGCT 179
| | ||||||||| || ||||||||||| ||||||||| |||||| |||| || |
Sbjct 112 ---G---G-GACATTGCCGCTACATAGAGTTCCGGTTTTGGAAAGCTTGCCTCTCAAGTT 164
Query 180 TAGTTCTTTACCATTTCAACCAGAAGATATCAAACTATGGGTTGAAGTTGCAGTCTCTCT 239
|||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 165 TAGTACTTTACCATTTCAACCAGAAGATATCAAACTATGCGTTGAAGCTGCAGTTTCTCA 224
Query 240 CTCTGTGCTGGAGCTTAGCATTGACTATTATTCTCATCAATACAAATCTGCTACATTGCC 299
|| ||||| ||||||| |||||| |||||| |||||| |||||||| ||||||||||||
Sbjct 225 CTGTGTGCGGGAGCTTTTCATTGATTATTATCCTCATCCATACAAATTTGCTACATTGCC 284
Query 300 ATTTTGCTTGTACACCTGCAAATCGCTCGAGACCCTCGCACTCT-TTGATGCAATTCTCA 358
||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 285 ATTTTGCGTGTACACCTGCAAATCGCTCGAGACCCTTGCACTCTCTT-ATGCAATTCTCA 343
Query 359 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTATGTGGAGTGA 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 344 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTACAAGGAGTGA 403
Query 419 GATACGTAGATGAATCTTTTCAACTACTCGATGTATCTCGTACGGTTTGTTTTCCCTCCC 478
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 404 GATACGTAGATGAATCTTTTCAACTACTCGATGAATCTCATACGGTTTGTTTTCCCTCCC 463
Query 479 TGGAAA-CTTTGTTCCTTAAAGACGTAGTCTTCTCCGATGAAAAATATCT-CGATCGCTT 536
|| ||| ||||| ||||||||| ||| ||| ||||||||||| |||||| |||||||||
Sbjct 464 TG-AAATCTTTGCACCTTAAAGAAGTAATCTCCTCCGATGAAAGATATCTTCGATCGCTT 522
Query 537 CTTGCCAATTGCCCTGATCTTGAATATTTGGTCATGGAACTACATGAATATGATACTATG 596
|||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||
Sbjct 523 CTTGCCAATTGCCCTGTTCTTGAAGAATTGGTCATGGAACTAGATGAATATGATACTTTG 582
Query 597 GGAGCTTT-----T-ATT--A---T-T---A-G--TT-AT-A---GAT-T-G-T-G--AT 627
|||||| | | ||| | | | | | || || | ||| | | | | ||
Sbjct 583 GGAGCTGTCCACATCATTGTACCGTCTTTGAAGAGTTTATCATTAGATATAGATTGTGAT 642
Query 628 CATTCTCCCGATGTGGTTGAAATTGTTGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 687
| |||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 643 CGTTCTTCCAATGTAGTTGAAATTGTCGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 702
Query 688 CACAACAACAATAAATTCTTGATAGAGAATATGCCTAATCTTGAAGAGGCATACATTGAT 747
|||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 CACAGCGACAATAAATTCTTGATAGAGAATATGCCTAAGCTTGAAGAGGCATACATTGAT 762
Query 748 GCTAATATCTTTGAATGCGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 805
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCTAATATCTTTGAATATGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 820
Score = 418 bits (226), Expect = 7e-116
Identities = 282/309 (91%), Gaps = 4/309 (1%)
Strand=Plus/Plus
Query 856 TGTACTTGTAAACCATATTGGTCGGTAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 915
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 949 TGTACTTGTAAACCATATTGGTCGATAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 1008
Query 916 CTAAAAGTCCTAGAGGTTGACGGCGACAATAATATTCCCGAATGTTTTAAGGCTCCACTG 975
||||||||||| ||| | || | ||||||| || || |||||||||| |||||||
Sbjct 1009 CTAAAAGTCCTTGAGCTC-ACAG--ACAATAAAATGCCATTGTGTTTTAAGGATCCACTG 1065
Query 976 GTTTGCTGGGATCAAGTGACACCTGTGCCAGAATGTTTGCTGACGAGTCTAGAGACTTTC 1035
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1066 GTTTGCTGGGATCAAGTGACACCTGTGCCTGAATGTTTGCTGACTAGTCTAGAGACTTTC 1125
Query 1036 AAGTGGACAGGCATACCATCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGATCCTG 1095
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1126 AAGTGGACAGACTTACCACCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGGTTCTG 1185
Query 1096 AAAGACGAAATGGTAAAACTTTTAAACGATAAGATCGTTAGGTCAGAAAGAAAAGAAT-C 1154
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1186 AAAAACGAAATGGTAAAACTTTTAGACGATAAGATCGTTAGGTCAGAAAGAAAAGAACAC 1245
Query 1155 ATCTTCTTC 1163
||| |||||
Sbjct 1246 ATCATCTTC 1254
> AT2G26860.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr2:11451973-11453843 REVERSE
LENGTH=1550
Length=1550
Score = 91.6 bits (49), Expect = 2e-17
Identities = 90/109 (83%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 17 CTGATG-ACTTGCTGGTGAAGATATTATCA-TTTCTTCCAACAAAAGTTGCTGTATCAAC 74
|||||| || | || ||| |||||||| || | |||||| ||||||| | |||||||||
Sbjct 132 CTGATGAAC-TACTAGTGGAGATATTA-CACTGTCTTCCGACAAAAGAAGTTGTATCAAC 189
Query 75 TAGCATTTTGTCTAAACGATGGAAGTTTCATTGGATGCGGGTGCC-AAA 122
|||||||||||||||||||||| |||| | |||| || |||| || |||
Sbjct 190 TAGCATTTTGTCTAAACGATGGGAGTTCCTTTGGTTGTGGGTACCTAAA 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5