BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472169
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14840.1 | Symbols: ATMAP70-4, MAP70-4 | microtubule-associa... 1306 0.0
AT2G01750.2 | Symbols: MAP70-3 | microtubule-associated protein... 484 1e-135
> AT1G14840.1 | Symbols: ATMAP70-4, MAP70-4 | microtubule-associated
proteins 70-4 | chr1:5112084-5115428 REVERSE LENGTH=2275
Length=2275
Score = 1306 bits (707), Expect = 0.0
Identities = 982/1100 (89%), Gaps = 78/1100 (7%)
Strand=Plus/Plus
Query 1073 GGAGAAA-TTCTACTGCTGCTTAGAGTGTTAGAAGAGAGTTTAAAGGGGCCTACAAGCAG 1131
||||||| || |||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1188 GGAGAAATTTTTACTGCGGCTTAGAGTGTTAGAAGAGAGTTTAAAGGGGCCTACGAGCAG 1247
Query 1132 CAGCAGTAGAGGCACATCCGTTGGTAGAAGTTCGAGCAACGGGCCTTCTCGAAGACAAGC 1191
|||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1248 CAGCAGCAGAGGCACATCTGTTGGTAGAAGTTCGAGCAACGGGCCTACTCGAAGACAATC 1307
Query 1192 CCTCGGTGGAGCTGAAACAAGTCCAAAAATTACATCAAATGGCTCGTTGATTAAGAGAAC 1251
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1308 CCTTGGTGGAGCTGAAACAAGTCCAAAAATTACATCAAATGGCTCGCTGATTAAGAGAAC 1367
Query 1252 ACCAAGTTCTCAGTTGAGATCATTAACTGCTAGTGCAAGCACTGTATTGAAGCATGCGAA 1311
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1368 ACCAAGTTCTCAGTTGAGATCATTGACTGCTAGTGCAAGCACTGTATTGAAGCATGCGAA 1427
Query 1312 AGGAACATCAAGATCA-TTGATGGGGACACCACTGGACACCAGATCACTGGATAGAAGCA 1370
|||||||||||||||| ||||| ||| || |||||||||| ||||||||||||
Sbjct 1428 AGGAACATCAAGATCATTTGAT-GGG--------GG-CACCAGATCATTGGATAGAAGCA 1477
Query 1371 AAGTGCTAATAAATGGACCAAGATCGAATTTTTCTTTGAACCACCAA-TCTTCTGAAGGA 1429
||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||
Sbjct 1478 AAGTGCTAATAAATGGACCGAGATCGAATTTTCCTTTGAACCA-CAAGTCTTCTGAAGGA 1536
Query 1430 ACTAGCAGAGGCGAGA-CGCCTAGCTCAATAAAAGGGGAAGCAGAAGCAGATGACAAGTC 1488
|||||||||||||| | |||||||||||||||||||||||| |||| ||| ||||||| |
Sbjct 1537 ACTAGCAGAGGCGA-ATCGCCTAGCTCAATAAAAGGGGAAGAAGAATCAGCTGACAAGGC 1595
Query 1489 AACAAATAATGATAGCGTCCCCA-GTGTCTTGTACGATTTGCTGCAGAAAGAGGTCATAA 1547
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 1596 AACAAATAATGATAGCGT-CCCAGGTGTCTTGTACGATCTGCTGCAGAAAGAGGTCATAA 1654
Query 1548 CAATAAGAAAAGCTGCGCATGATAAAGATCAGAGCCTGAGAGACAAGGACGAAGCTATTG 1607
|| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1655 CATTAAGAAAAGCGGCGCATGAAAAAGATCAGAGCCTGAGAGACAAGGACGAAGCGATTG 1714
Query 1608 AGATGTTGGCCAAGAAGGTTGAAACATTAACAAAGGCGATGGATGTTGAGGCAAAGAAGA 1667
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1715 AGATGTTGGCCAAGAAGGTTGAAACATTAACAAAGGCGATGGACGTTGAGGCAAAGAAGA 1774
Query 1668 TGCGAAGAGAAGTAGCTGTAATGGGGAAAGAAGTTGCTGCAATGCGTGTTG---ATAAAG 1724
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1775 TGCGAAGAGAAGTAGCTGTAATGGGGAAAGAAGTTGCTGCAATGCGTGTTGTTGATAAAG 1834
Query 1725 GACAGCAAGATAGTAAGACCAGACGTCTCTCGGTCTCAAAGGGAAACACTGCTCAACTTC 1784
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1835 GACAACAAGATAGTAAGACCAGACGTCTCTCGGTCTCAAAGGGAAACACAGCTCAGCTAC 1894
Query 1785 TTTCTGGAAGAGTGTCTGGACGAATTGGGATGACGAGGAGCACGCAGTGACAAACTGATT 1844
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1895 TTTCTGGAAGAGTGTCTGGACGAATCGGGATGACGAGGAGCACACAGTGACAAACTGATT 1954
Query 1845 CGATCAA-----GGTT---CT-TGTG-C---CA--AA--TT---G-A-------GAGA-A 1875
||||||| |||| || |||| | | || || | | |||| |
Sbjct 1955 CGATCAATCACTGGTTGGTCTCTGTGGCTTGCCTTAAGGTTCTTGTACCAAATTGAGAGA 2014
Query 1876 -GGGATTCAAAAGCCGAAAGAGATAATCTTGTAAAGAACCTGATTGATTCGATGTGTGCT 1934
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 2015 AGGGATTCAAAAGCCGAAAGAGATAATCGTGTAAAGTACCTGATTGATTCGATGTGTG-T 2073
Query 1935 TCTTCTCTAAAGCATTCCAACATTCAAGGTAAAGGGAGACATTGACTTCACTTGGCTGAT 1994
| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2074 T-T-CTCTAAAGCATTCCAACATTCAAGGTAAAGGGAGACATTGACTTCACTTAGCTGAT 2131
Query 1995 ATATTTCTTATTTTGTTGTGTTATGTATAGTAGTA--G---TAG-AG-G-TAGGGTT-TT 2045
|||||||||| | ||||| |||||||||||||||| | ||| || | ||||||| ||
Sbjct 2132 ATATTTCTTACTCTGTTGCGTTATGTATAGTAGTACTGCAGTAGTAGAGGTAGGGTTGTT 2191
Query 2046 Gt-tt-----ttttAA-CT------CTGT-T-GTTTTGTGTGTGTCACTCTCTCCTCTTA 2090
| || |||||| || || | | ||||||||||||||||||||||||||||
Sbjct 2192 TTGTTCAACATTTTAAGCTTTTTTACTCTCTTGTTTTGTGTGTGTCACTCTCTCCTCTTA 2251
Query 2091 GTTAATATTCTTGTTAACCT 2110
|||||| ||||| |||||||
Sbjct 2252 GTTAATTTTCTTATTAACCT 2271
Score = 712 bits (385), Expect = 0.0
Identities = 422/440 (96%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 611 ATTGCTAAACTTCAAGACGACAACAAATCATTGGACCACCTAACCAAATCAAAGGAAGCA 670
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 643 ATTGCTAAACTTCAAGACGACAATAAATCATTGGACCGCCTAACCAAATCAAAGGAAGCA 702
Query 671 GCTTTGCTTGACGTTGAAAAGACAGTTCAGTCTGCATTGGCAAAGGCTTCAATGGTTGAT 730
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GCTTTGCTTGACGCTGAAAGGACAGTTCAGTCTGCATTGGCAAAGGCTTCAATGGTTGAT 762
Query 731 GACCTCCAGAATAAGAACCAAGAATTGATGAAACAAATTGAAATTTGTCAGGAAGAGAAT 790
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 763 GATCTCCAGAATAAGAACCAAGAATTGATGAAACAGATTGAAATTTGTCAGGAAGAGAAT 822
Query 791 AAAATTATAGACAAGATGCACAGACAGAAGGTTGCAGAAGTTGAAAAGCTTATGCAGAGT 850
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGAATTATAGACAAGATGCACAGACAGAAGGTTGCAGAAGTTGAAAAGCTTATGCAGAGT 882
Query 851 GTGCGGGAGTTAGAAGAAGCTGTTCTTGCTGGTGGTGCAGCTGCAAATGCAGTGAGAGAT 910
|| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 883 GTTCGGGAATTAGAAGAAGCTGTTCTTGCTGGTGGTGCAGCCGCAAACGCAGTGAGAGAT 942
Query 911 TACCAGAGGAAATTTCAAGAAATGAATGAAGAGAGGAAAAATC-TTGAACGGGAATTGGC 969
||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 943 TACCAAAGGAAATTCCAAGAAATGAATGAAGAGAGGAAAA-TCCTTGAACGGGAATTGGC 1001
Query 970 CCGTGCGAAGGTAAATGCAAATAGAGTTGCTACTGTTGTAGCAAACGAATGGAAAGATAC 1029
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 1002 CCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTC 1061
Query 1030 TAATGACAAAGTGATGCCTG 1049
||||||||||||||||||||
Sbjct 1062 TAATGACAAAGTGATGCCTG 1081
Score = 508 bits (275), Expect = 6e-143
Identities = 322/343 (94%), Gaps = 9/343 (3%)
Strand=Plus/Plus
Query 71 TTAGAACTTTAGCA-TTTGGTTCAATTTGGAATTTGGAATTGTGGTGAGGATTGAGATCG 129
||| |||||||||| |||||||||| | ||| ||||||||||||||||||||||||
Sbjct 71 TTACAACTTTAGCATTTTGGTTCAA--T----TTT-GAATTGTGGTGAGGATTGAGATCG 123
Query 130 GaaaaaaaTGGAGGAAAGAGGATTTATGTCTCCTTCATTGGCCATATCGGCGTCTTATCG 189
| || |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 124 G-AAGTAATGGAGGAAAGAGGATTTATGTCACCTTCATTGGCTATATCGGCTTCTTATCG 182
Query 190 ACAAGGAGGAAGCAAAGGCATGTCACGAAGGAGGTCAATGAGGCCAAGCCTTGACGCGGA 249
| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 183 AGAAGGAGGAAGCAAAGGCATGTCACGACGGAGGTCAATGAGACCAAGCTTTGACGCGGA 242
Query 250 TAACGAGTTCATGAACGTTCTCCATGGCTCAGATCCCGTGAGAATTGAGTTAAATCGGCT 309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TAACGAGTTCATGAACCTTCTCCATGGCTCAGATCCCGTGAGAATTGAGTTAAATCGGCT 302
Query 310 GGAGAATGAAGTCAGAGATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGC 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GGAGAATGAAGTCAGAGATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGC 362
Query 370 TTTGAGGTTGTCTGAACGACAAAGAGAGAAAGCTGTTGAAGAG 412
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct 363 TTTGAGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAG 405
Score = 255 bits (138), Expect = 9e-67
Identities = 145/148 (98%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 463 CTCACTGAAGAGTTGGGAAAGATGGCGGAAAAACTCTAAACTGATTGAAAATCTTCTTGA 522
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 406 CTCACTGAAGAGTTGGGAAAGATGGCGGAAAAACTC-AAACTTATTGAAAATCTTCTTGA 464
Query 523 GAGTAAAAACCTTGAAATCAAGAAGATAAATGAAGAAAAGAAGGCTTCCATGGCAGCTCA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GAGTAAAAACCTTGAAATCAAGAAGATAAATGAAGAAAAGAAGGCTTCCATGGCAGCTCA 524
Query 583 GTTTGCTGCAGAAGCTTCTCTTCGTAGG 610
|||||| |||||||||||||||||||||
Sbjct 525 GTTTGCAGCAGAAGCTTCTCTTCGTAGG 552
> AT2G01750.2 | Symbols: MAP70-3 | microtubule-associated proteins
70-3 | chr2:328089-332113 FORWARD LENGTH=2339
Length=2339
Score = 484 bits (262), Expect = 1e-135
Identities = 384/443 (87%), Gaps = 8/443 (2%)
Strand=Plus/Plus
Query 611 ATTGCTAAACTTCAAGACGACAACAAATCATTGGACCACCTAACCAAATCAAAGGAAGCA 670
|||| |||||||||||| ||||||| | ||||||||| |||||||| || |||||||||
Sbjct 767 ATTGTTAAACTTCAAGATGACAACAGAGCATTGGACCGTCTAACCAAGTCGAAGGAAGCA 826
Query 671 GCTTTGCTTGACGTTGAAAAG-ACAGTTCAGTCTGCAT-TGGCAAAGGCTTCAATGGTTG 728
||||||||||| | || |||| || ||||||||||| | | |||||||||||||||||||
Sbjct 827 GCTTTGCTTGATGCTG-AAAGAACTGTTCAGTCTGC-TCTTGCAAAGGCTTCAATGGTTG 884
Query 729 ATGACCTCCAGAATAAGAACCAAGAATTGATGAAACAAATTGAAATTTGTCAGGAAGAGA 788
|||||||||||||||| |||||||| | |||||||| || |||||||||||||||||||
Sbjct 885 ATGACCTCCAGAATAAAAACCAAGAGCTAATGAAACAGATAGAAATTTGTCAGGAAGAGA 944
Query 789 ATAAAATTATAGACAAGATGCACAGACAGAAGGTTGCAGAAGTTGAAAAGCTTATGCAGA 848
| | |||| | |||||| |||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 945 ACAGAATTTTGGACAAGTTGCACAGACAAAAGGTTGCAGAAGTTGAAAAGTTTACCCAGA 1004
Query 849 GTGTGCGGGAG-TTAGAAGAAGCTGTTCTTGCTGGTGGTGCAGCTGCAAATGCAGTGAGA 907
|| |||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1005 CCGTACGGGAGCTT-GAAGAAGCTGTTCTTGCTGGTGGTACAGCTGCAAATGCAGTGAGA 1063
Query 908 GATTACCAGAGGAAATTTCAAGAAATGAATGAAGAGAGGAAAAATC-TTGAACGGGAATT 966
|||||||||||||||||||||||||||||||||||||||| || || |||| |||||| |
Sbjct 1064 GATTACCAGAGGAAATTTCAAGAAATGAATGAAGAGAGGAGAA-TCCTTGATCGGGAACT 1122
Query 967 GGCCCGTGCGAAGGTAAATGCAAATAGAGTTGCTACTGTTGTAGCAAACGAATGGAAAGA 1026
||| ||||| || |||| ||||| || ||||| ||||| || ||||| || ||||||||
Sbjct 1123 GGCTCGTGCCAAAGTAAGTGCAAGCAGGGTTGCAACTGTAGTGGCAAATGAGTGGAAAGA 1182
Query 1027 TACTAATGACAAAGTGATGCCTG 1049
| || || |||||||||||||
Sbjct 1183 TGGTAGCGATAAAGTGATGCCTG 1205
Score = 481 bits (260), Expect = 1e-134
Identities = 629/798 (79%), Gaps = 62/798 (8%)
Strand=Plus/Plus
Query 1073 GGAGAAA-TTCTACTGCTGCTTAGAGTGTTAGAAGAGAGTTTAAAG-GGGCCTACAAGCA 1130
||||||| ||| ||||| ||||||||| |||||||||||||| ||| |||||| ||||||
Sbjct 1312 GGAGAAATTTCAACTGCGGCTTAGAGTCTTAGAAGAGAGTTT-AAGAGGGCCTTCAAGCA 1370
Query 1131 GCAGCAGTAGAGGC-ACATCC-GTTGGTAGAAGT-TCGAGCAACGGGCCTTCTCGAAGAC 1187
| | | || | ||| || | || |||||| | |||||||||||||||||||||||
Sbjct 1371 GTGGAAACCGA-TCGACA-CCTGAGGGAAGAAGTAT-GAGCAACGGGCCTTCTCGAAGAC 1427
Query 1188 AAGCCCTCGGTGGAGCTGAAACAAGTCCAAAAATTACATCAAATGGCTCGTTGAT-TAAG 1246
|| |||| || |||||||| | | ||| ||| | ||||||||||| | || | |||
Sbjct 1428 AATCCCTTGGCGGAGCTGATATTATTCCGAAACTGACATCAAATGGAT-TTTTCTCCAAG 1486
Query 1247 AGAACACCAAGTTCTCAGTTGAGATCATT-AACTGCTAGTGCAAGCACTGTATTGAAGCA 1305
|| |||||||||||||||| ||||| || || ||||||| ||||||| ||||||||||
Sbjct 1487 AGGTCACCAAGTTCTCAGTTTAGATCTTTGAA-TGCTAGTACAAGCACAATATTGAAGCA 1545
Query 1306 TGCGAAAGGAACATCAAGATCATTGATGGGGACACCACTGGACACCAGATCACTGGATAG 1365
||||||||||||||| |||||||| | ||| | || || ||||| | |||||
Sbjct 1546 TGCGAAAGGAACATCCAGATCATT--T---GAC-GGA--GG-CAGTAGATCTTTAGATAG 1596
Query 1366 AAGCAAAGTGCTAATAAATGGACCAAGATCGAATTTTTCTTTGAACCACCAATCTTCTGA 1425
|| ||||| |||| ||| | ||| |||||||| ||| | ||| | |||||||||||||
Sbjct 1597 GAGTAAAGTACTAACAAACGAACCCAGATCGAAGTTTCCATTG-A--ACCAATCTTCTGA 1653
Query 1426 AGGAACTAGCAGAGGCGAGACGCCTAGCTCAATAAAAGGGGAAGCAGAAGCAGATGACAA 1485
|||||| ||| |||||| | | |||| |||| |||| ||| ||| |||| || ||
Sbjct 1654 AGGAACAAGCGGAGGCGGGTCACCTAATTCAACAAAA---CAAGGAGATTCAGA-GA-AA 1708
Query 1486 G--TCA---ACAAATAATGATAGCGTCCCCA-GTGTCTTGTACGATTTGCTGCAGAAA-G 1538
| || |||||||||||||| || |||| | || || | |||||||| || ||| |
Sbjct 1709 GCAGCAGGGACAAATAATGATAGTGT-CCCAGGAGTATTACATGATTTGCTTCA-AAAGG 1766
Query 1539 AGGTCATAACAATAAGAAAAGCTGCGCATGATAAAGATCAGAGCCTGAGAGACAAGGACG 1598
|||| ||||| |||| |||||||| ||||||||||||| ||||| ||||| || ||||
Sbjct 1767 AGGTGATAACTTTAAGGAAAGCTGCTAATGATAAAGATCAAAGCCTTAGAGATAAAGACG 1826
Query 1599 AAGCTATTGAGATGTTGGCCAAGAAGGTTGAAACATTAACAAAGGCGATGGATGTTGAGG 1658
||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |
Sbjct 1827 AAGCTATTGAGATGTTGGCCAAGAAGGTTGAAACACTAACAAAGGCGATGGAAGTGGAAG 1886
Query 1659 CAAAGAAGATGCGAAGAGAAGTAGCTGTAATGGGGAAAGAAGTTGCTGCAATGCGTGTTG 1718
||||||||||||||||||||||||| | ||||| |||||| ||| | || |||||||| |
Sbjct 1887 CAAAGAAGATGCGAAGAGAAGTAGCAGCAATGGAGAAAGAGGTTTCAGCTATGCGTGTGG 1946
Query 1719 ATAA-A--GGACAGCAAGATAGTAAGACC-AGACGTCTCTCGG-T--CTCAAAGGGA--- 1768
|||| | ||| || ||||||| || | ||||||| ||| | |||||| |||
Sbjct 1947 ATAACAAAGGAT--CA-GATAGTA-GAACGAGACGTCACTCTACTAACTCAAAAGGAGCT 2002
Query 1769 --AACA-CTGCTCAACTT-CTTTCTGGAAG-AGTGTCT--GGACGAATTGGGATGACGAG 1821
|||| |||| || || ||||||||||| || | || |||||||| |||||||||||
Sbjct 2003 TCAACAACTGCACAG-TTACTTTCTGGAAGCAGAGGCTCAGGACGAATGGGGATGACGAG 2061
Query 1822 GAGCACGCAGTGA-CAAA 1838
||||||||||||| ||||
Sbjct 2062 GAGCACGCAGTGATCAAA 2079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5