BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472170
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14830.1 | Symbols: ADL1C, ADL5, DRP1C, DL1C | DYNAMIN-like ... 1430 0.0
> AT1G14830.1 | Symbols: ADL1C, ADL5, DRP1C, DL1C | DYNAMIN-like
1C | chr1:5107421-5111670 REVERSE LENGTH=2323
Length=2323
Score = 1430 bits (774), Expect = 0.0
Identities = 913/976 (94%), Gaps = 26/976 (3%)
Strand=Plus/Plus
Query 1 GTTTTTCCCATTACCGTTCTCTGCTCCATTGGGTTCTTTCCTCTTTTCTCCCAGATTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTTCCCATTACCGTTCTCTGCTCCATTGGGTTCTTTCCTCTTTTCTCCCAGATTCAT 60
Query 61 CAAT--CT-CTCCTACCGC-CGCGAG---------A---GA-G-TT-AAAAAC-T-CACC 99
|||| || || ||||||| | ||| | || | || ||| | | | ||
Sbjct 61 CAATCCCTCCTGCTACCGCGAGAGAGTAACAACTCACCGGACGTTTCAAATCCATCCTCC 120
Query 100 G--GAC-GT-TTCAAATTCGTTAGATCTAGATCTGAGCGTCGGTGAGAGATTTTCTGGAT 155
| || | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATAACTATATTC-GTTTCGTTAGATCTAGATCTGAGCGTCGGTGAGAGATTTTCTGGAT 179
Query 156 CTGTGATACGTTCCAGGAAACATGGCGACGATGAAAAGTTTGATAGGTCTGATAAACAAA 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGTGATACGTTCCAGGAAACATGGCGACGATGAAAAGTTTGATAGGTCTGATAAACAAA 239
Query 216 ATCCAGAGGGCTTGTACTGTCCTCGGAGATCATGGTGGTGAAGGAATGTCGCTTTGGGAA 275
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 ATCCAGAGGGCGTGTACTGTCCTCGGAGATCATGGCGGTGAAGGAATGTCGCTTTGGGAA 299
Query 276 GCTCTCCCAACCGTCGCTATCGTTGGTGGCCAGAGCTCCGGAAAATCTTTAGTTCTAGAA 335
|||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||
Sbjct 300 GCTCTCCCAACCGTCGCTGTCGTTGGTGGCCAGAGTTCCGGAAAATCTTCAGTTCTAGAA 359
Query 336 AGTGTTGTGGGAAGAGATTTTCTGCCTCGTGGATCTGGTATCGTTACAAGGAGGCCATTG 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTGTTGTGGGAAGAGATTTTCTGCCTCGTGGATCTGGTATCGTTACAAGGAGGCCATTG 419
Query 396 GTGTTGCAGCTTCATAAGACTGAAGAAGGGACAACGGAGGACGCTGAGTTTCTTCATGCT 455
|||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 420 GTGTTGCAACTTCATAAGACTGAAGACGGGACAACTGAGTACGCTGAGTTTCTTCATGCT 479
Query 456 CCGAAGAAGAGATTTGCTGATTTTGCTGCTGTGCGGAAGGAAATTGAGGACGAAACTGAT 515
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 480 CCTAAGAAGAGATTTGCTGATTTTGCTGCTGTGCGGAAAGAAATTGAGGATGAAACTGAT 539
Query 516 CGTATTACTGGGAAGTCAAAACAAATCTCAAACATTCCAATTCAGCTGAGCATATATTCT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGTATTACTGGGAAGTCAAAACAAATCTCAAACATTCCAATTCAGCTGAGCATATATTCT 599
Query 576 CCTAATGTTGTTAATCTGACGCTCATAGATCTTCCGGGTTTGACCAAGGTTGCTGTAGAT 635
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 CCTAATGTTGTTAATCTGACGCTCATAGATCTTCCGGGTTTGACCAAGGTCGCTGTAGAT 659
Query 636 GGACAACCGGATAGTATTGTCCAAGACATTGAATATATGGTCCGCTCTTATGTTGAAAAG 695
||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 660 GGACAACCGGAAAGTATTGTCCAAGACATTGAAAATATGGTCCGGTCTTATGTTGAAAAG 719
Query 696 CCAAATTGCATCATATTGGCTATTTCTCCAGCTAATCAAGATATTGCCACCTCAGACGCT 755
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 720 CCAAATTGCATCATATTGGCTATTTCTCCAGCAAATCAAGATATTGCTACCTCAGATGCT 779
Query 756 ATAAAACTTGCTAGAGAAGTTGATCCTACAGGCAAAAGAACTTTTCGAGTTGCAACCAAG 815
||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||
Sbjct 780 ATAAAACTTGCTAGAGAAGTTGATCCTACAGGCGAAAGGACTTTTGGTGTTGCAACCAAG 839
Query 816 CTTGGTATCATGGATAAAGGAACAGATTGTCTAGATGTTCTTGAGGGAAGGTCGTACCGT 875
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 CTTGATATCATGGATAAAGGAACAGATTGTCTAGATGTTCTTGAGGGAAGGTCATACCGT 899
Query 876 TTGCAACATCCCTGGGTTGGAATTGTGAGTCGTTCACAAGCTGATATTAATAAGAGGGTC 935
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 900 TTGCAACATCCCTGGGTTGGAATTGTGAATCGTTCACAAGCTGATATTAATAAGAGAGTC 959
Query 936 GATATGATTGCTGCAC 951
||||||||||||||||
Sbjct 960 GATATGATTGCTGCAC 975
Score = 870 bits (471), Expect = 0.0
Identities = 557/596 (93%), Gaps = 15/596 (3%)
Strand=Plus/Plus
Query 1502 TGAACCCGAGAAAGAGAAACCAAACCCAA-GAATTGCCTCACCACCAAACGCAGACCCCT 1560
||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||
Sbjct 1694 TGAACCCGAGAAAGAGAAACCAAACCCAAGGAA-TGCCCCAGCACCAAACGCAGACCCCT 1752
Query 1561 ACTCCGATAACCACTTCAGAAAGATCGGATCCAACGTGAGTGCATACACAAACATGGTCT 1620
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1753 ACTCCGATAATCACTTCAGAAAGATCGGATCCAACGTGAGTGCATACATAAACATGGTCT 1812
Query 1621 GCGACACATTGAGAAACTCTCTTCCTAAAGCTGTCGTTTACTGCCAAGTTAGAGAAGCTA 1680
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1813 GCGACACATTGAGAAACTCTCTTCCCAAAGCTGTCGTTTACTGCCAAGTTAGAGAAGCTA 1872
Query 1681 AGAGATCGCTGCTCAACTTCTTCTACGCTCAAGTTGGCAGGAAAGAGAAGGAGAAGCTGG 1740
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 AGAGATCGCTTCTCAACTTCTTCTACGCTCAAGTTGGCAGGAAAGAGAAGGAGAAGCTGG 1932
Query 1741 GTG-TGATGTTGGACGAAGACCCACAGCTGATGGAACAAAGAGGAACATTAGCTAAACGG 1799
||| | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1933 GTGCT-ATGTTGGACGAAGACCCACAGCTGATGGAACGAAGAGGAACCTTAGCTAAACGG 1991
Query 1800 CTCGAGCTTTACAAACAAGATAGAGACGACATCGATGCTGTGGCTTGGAAGTAAGGG--T 1857
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 1992 CTAGAGCTTTACAAACAAGCTAGAGACGACATCGATGCAGTGGCTTGGAAGTAAGGGGGT 2051
Query 1858 TTGCTAAGAAATATTCTTTATATTGTTAATTTCTTTGTTCGTGTGGGGAC--TGCATTAT 1915
||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2052 TTGCTAAGACATATTCTTTATATTGTTAATTTCTTTGTTCGTGTGGGCACACTGCATTAT 2111
Query 1916 AATAGATATGTTGGGAGTTCTAACTTCCAATCCACACAAACACACACGCGATTACTCATG 1975
|||||||||||| |||||||||||||||| || ||||||||| |||||||| ||||||||
Sbjct 2112 AATAGATATGTTTGGAGTTCTAACTTCCAGTCTACACAAACATACACGCGACTACTCATG 2171
Query 1976 TTTTCTTCGGTCGCTAATTGCTATCACAACTTTCCCACttttttt-GGTGT--ATC---G 2029
||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||| |
Sbjct 2172 TTTTCTTGGGTCGCTAATTTCTATCACAACTTTCCCACTTTTTTTTGGTGTGTATCTTCG 2231
Query 2030 ATTCTTGGATACTGGTTTT-AGAACAGTTGAGACATATTTTGATGTCGCATTCTTT 2084
||||||| ||||||||||| ||||||||| ||||||||||||| |||||| |||||
Sbjct 2232 ATTCTTGAATACTGGTTTTTAGAACAGTTAAGACATATTTTGAAGTCGCACTCTTT 2287
Score = 638 bits (345), Expect = 0.0
Identities = 464/514 (90%), Gaps = 37/514 (7%)
Strand=Plus/Plus
Query 955 ATCTAGCAAAACTCTTGTCTCAGCACTTAGAGACTGTTATCGGGCAGAAAATACCCAGTA 1014
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1048 ATCTAGCAAAACTCTTGTCTCAGCACTTAGAGACTGTTATCAGGCAGAAAATCCCCAGTA 1107
Query 1015 TTGTTGCTTTGATCAACAAAAGCATCGATGAGATAAATGCAGAGCTGGATAGGATTGGGA 1074
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1108 TTGTTGCTTTGATCAACAAAAGCATCGATGAGATAAATGCAGAACTTGATAGGATTGGGA 1167
Query 1075 GATCCATTGCAGTAGACTCAGGATCACTCTCTAATTATGATTCCAGGCCCAACTCTACAC 1134
|| ||||||| || | | | | | || | | | |||||||| |||||
Sbjct 1168 GACCCATTGC---AG--T-A-G---A-T-TC-----A-G----GA-GCCCAACTTTACAC 1204
Query 1135 AATTTTGGAACTCTGCCGGGCATTTGATTGTGTCTTTAAGGAGCACTTGGATGGA-G--G 1191
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1205 AATTTTGGAACTCTGCCGGGCATTTGATCGTGTCTTTAAGGAGCACTTGGATGGAGGACG 1264
Query 1192 ACC-------G---G-ATTTATGGAGTTTTCGACCATCAATTACCAGCAGCCTTAAATAA 1240
||| | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1265 ACCTGGTGGAGACCGAATTTATGGAGTTTTCGACCATCAATTACCAGCAGCCTTAAAGAA 1324
Query 1241 ACTTCCCTTTGATCGACATCTCTCGACCAAAAATGTTCAGAAGGTTGTTTCAGAAGCTGA 1300
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1325 ACTTCCCTTTGATCGACATCTGTCTACCAAAAATGTTCAGAAGGTTGTTTCAGAAGCAGA 1384
Query 1301 TGGTTATCAGCCGCATCTTATTGCTCCTGAACAAGGATACAGAAGGCTCATTGATGGATC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGGTTATCAGCCGCATCTTATTGCTCCTGAACAAGGATACAGAAGGCTCATTGATGGATC 1444
Query 1361 CATAAGCTATTTCAAAGGATCAGCTGAAGCCACTGTCGATGCAGTGCATTTCGTATTGAA 1420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CATAAGCTATTTCAAAGGACCAGCTGAAGCCACTGTCGATGCAGTGCATTTCGTATTGAA 1504
Query 1421 GGAGCTGGTCAGAAAGTCAATTTCAGAAACAGAG 1454
||||||||||||||||||||||||||||||||||
Sbjct 1505 GGAGCTGGTCAGAAAGTCAATTTCAGAAACAGAG 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103312721610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5