BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472171

Length=773
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14810.1 | Symbols:  | semialdehyde dehydrogenase family pro...   409    2e-113


> AT1G14810.1 | Symbols:  | semialdehyde dehydrogenase family protein 
| chr1:5102424-5104695 REVERSE LENGTH=1450
Length=1450

 Score =  409 bits (221),  Expect = 2e-113
 Identities = 251/265 (95%), Gaps = 3/265 (1%)
 Strand=Plus/Plus

Query  1    TCAAAATGTCTCTCCAAGAATCTGCGCCTTCCCTCGCCGTCGTTGGAGTTACCGGAGCCG  60
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  151  TCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTACCGGAGCCG  210

Query  61   TTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCGTCAAG  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  211  -TCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCATCAAG  269

Query  121  ATGCTTGCATCGAAACGCTCCGCAGGGAAACGTCTAGCCTTCGATGGCCGTGAATACACG  180
            ||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||
Sbjct  270  ATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATGAATACACG  329

Query  181  GTGGAGGAGCTCACGGCGGAGAGCTTCGACGGCGTAGACA-AGGCTTTGTTCAGTGCTGG  239
            |||||||||||||||||||| |||||| |||| ||||||| || ||||||||||||||||
Sbjct  330  GTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAG-CTTTGTTCAGTGCTGG  388

Query  240  TGGATCCATAAGCAAGGAGTTTGGT  264
            ||||||||||||||| |||||||||
Sbjct  389  TGGATCCATAAGCAAAGAGTTTGGT  413


 Score =  222 bits (120),  Expect = 3e-57
 Identities = 161/179 (90%), Gaps = 9/179 (5%)
 Strand=Plus/Plus

Query  263  GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTG-TCAGCAGA  321
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  643  GTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGA  702

Query  322  CTCGCCAGTGATTATGTTTTAGAGGGTAAACCTCCGACTTGTATCATCTTTGGACAACAG  381
            ||   | |||   | |||||||||||||||||||||||||||| |||||| || || |||
Sbjct  703  CT---C-GTG---AGGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAG  755

Query  382  TATGCATTTAACTTGTTT-CGCATAATGCTCCTATTCTTGACAACGGAGACAAGGAAGA  439
            |||||||||||||||||| | ||||||||||||||||||||||||||  |||| |||||
Sbjct  756  TATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACGGTTACAACGAAGA  814


 Score =  178 bits (96),  Expect = 7e-44
 Identities = 108/114 (95%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  426  GGAGACAAGGAAGATCTCGAATGACACTGAAGTAAAAGTAACAGCTACATGTATACGTGT  485
            ||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||
Sbjct  833  GGAGACAAGGAAGATCTGGAATGACACAGAAGTAAAAGTAACAGCAACGTGTATACGTGT  892

Query  486  TCCAGTTATGCGTGCTCATGCAGAGAGTGTAAATCTCCAGTTTGAGAATCCTCT  539
            |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  893  TCCAGTTATGCGTGCTCATGCAGAGAGTGTGAATCTTCAGTTTGAGAATCCTCT  946



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37575141956


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5