BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472173
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19440.1 | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:... 2940 0.0
AT1G68530.1 | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-... 126 7e-28
> AT1G19440.1 | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6728984-6730931
FORWARD LENGTH=1948
Length=1948
Score = 2940 bits (1592), Expect = 0.0
Identities = 1791/1884 (95%), Gaps = 26/1884 (1%)
Strand=Plus/Plus
Query 1 TTTTGTTGGGTCTTCGTCAAAGTTGTCTCCTTTACCGTCCTTTTCACCAGCGCAACAATA 60
||||| |||||||||||||||| | |||||||||| ||||||||| ||||||| | | |
Sbjct 4 TTTTGGTGGGTCTTCGTCAAAGCTCTCTCCTTTACGGTCCTTTTCTCCAGCGC-ATGA-A 61
Query 61 AAAATAAACAACACCTGTAATTGTTAAAATCGCAACATTTTCCG------------T--A 106
| |||||| ||||||||| || |||||||| | |||||||||| | |
Sbjct 62 ATAATAAAGGACACCTGTATTTATTAAAATCACTACATTTTCCGTAACAAAAAAAATCAA 121
Query 107 A-------TTCACAATGGACGGTGCTGGAGAATCACGAGTCGGT-G-G-TGGTGGTGGTG 156
| ||| ||||||||||||| |||||||||||| ||||| | | |||||||||||
Sbjct 122 ACTTTGTTTTCTCAATGGACGGTGCCGGAGAATCACGACTCGGTGGTGATGGTGGTGGTG 181
Query 157 ATGGTTCTGTTGGGGTACAGATCCGACAAACACGGAGGCTACCGGATTTTCTCCAGAGCG 216
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 ATGGTTCTGTTGGAGTTCAGATCCGACAAACACGGATGCTACCGGATTTTCTCCAGAGCG 241
Query 217 TGAATCTCAAGTATGTGAAATTAGGTTACCATTACTTAATCTCAAATCTCTTGACTCTCT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGAATCTCAAGTATGTGAAATTAGGTTACCATTACTTAATCTCAAATCTCTTGACTCTCT 301
Query 277 GTTTATTCCCTCTCGCCGTTGTTATCTCCGTCGAAGCTTCTCAGATGAACCCAGACGATC 336
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 302 GTTTATTCCCTCTCGCCGTTGTTATCTCCGTCGAAGCCTCTCAGATGAACCCAGATGATC 361
Query 337 TCAAACAGCTCTGGATCCATCTCCAATACAATCTGGTTAGTATCATCATCTGTTCCGCGA 396
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 362 TCAAACAGCTCTGGATCCATCTACAATACAATCTGGTTAGTATCATCATCTGTTCAGCGA 421
Query 397 TTCTAGTCTTCGGATTAACGGTTTATGTTATGACCCGACCTAGACCCGTTTACTTGGTTG 456
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTCTAGTCTTCGGGTTAACGGTTTATGTTATGACCCGACCTAGACCCGTTTACTTGGTTG 481
Query 457 ATTTCTCCTGTTATCTCCCACCTGATCACCTCAAAGCTCCTTACGCTCGGTTCATGGAAC 516
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 482 ATTTCTCTTGTTATCTCCCACCTGATCATCTCAAAGCTCCTTACGCTCGGTTCATGGAAC 541
Query 517 ATTCTAGACTCACCGGAGACTTCGATGACTCTGCTCTCGAGTTTCAACGCAAGATCCTCG 576
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 542 ATTCTAGACTCACCGGAGATTTCGATGACTCTGCTCTCGAGTTTCAACGCAAGATCCTTG 601
Query 577 AGCGTTCTGGTTTAGGGGAAGACACTTATGTCCCTGAAGCTATGCATTTTGTTCCACCTA 636
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 602 AGCGTTCTGGTTTAGGGGAAGACACTTATGTCCCTGAAGCTATGCATTATGTTCCACCGA 661
Query 637 GAATTTCAATGGCTGCTGCTAGAGAAGAAGCTGAACAAGTCATGTTTGGTGCTTTAGATA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAATTTCAATGGCTGCTGCTAGAGAAGAAGCTGAACAAGTCATGTTTGGTGCTTTAGATA 721
Query 697 ACCTTTTCGCTAACACTAGTGTGAATCCAAAGGATATTGGAATCCTTGTTGTGAATTGTA 756
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 722 ACCTTTTCGCTAACACTAATGTGAAACCAAAGGATATTGGAATCCTTGTTGTGAATTGTA 781
Query 757 GTCTCTTTAATCCAACTCCTTCGTTATCTGCAATGATTGTGAACAAGTATAAGCTTAGAG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTCTCTTTAATCCAACTCCTTCGTTATCTGCAATGATTGTGAACAAGTATAAGCTTAGAG 841
Query 817 GTAACATTAGAAGCTACAATCTCGGCGGTATGGGTTGTAGTGCGGGAGTTATCGCTGTGG 876
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 842 GTAACATTAGAAGCTACAATCTAGGCGGTATGGGTTGCAGCGCGGGAGTTATCGCTGTGG 901
Query 877 ATCTTGCTAAAGACATGTTGTTGGTTCACAGGAACACTTATGCGGTTGTTGTTTCTACTG 936
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 902 ATCTTGCTAAAGACATGTTGTTGGTACATAGGAACACTTATGCGGTTGTTGTTTCTACTG 961
Query 937 AGAACATTACTCAGAACTGGTATTTCGGTAACAAGAAATCGATGTTGATACCGAACTGCT 996
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 962 AGAACATTACTCAGAATTGGTATTTTGGTAACAAGAAATCGATGTTGATACCGAACTGCT 1021
Query 997 TGTTTCGAGTTGGTGGCTCTGCTGTTTTGCTATCGAACAAGTCGAGGGACAAAAGACGGT 1056
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1022 TGTTTCGAGTTGGTGGCTCTGCGGTTTTGCTATCGAACAAGTCGAGGGACAAGAGACGGT 1081
Query 1057 CTAAGTACAGACTTGTGCATGTTGTCAGGACTCACCGTGGAGCAGATGATAAAGCTTTCC 1116
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1082 CTAAGTACAGGCTTGTACATGTAGTCAGGACTCACCGTGGAGCAGATGATAAAGCTTTCC 1141
Query 1117 GTTGCGTTTATCAAGAACAGGATGATACAGGGAGAACCGGGGTTTCTTTGTCGAAAGATC 1176
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1142 GTTGTGTTTATCAAGAGCAGGATGATACAGGGAGAACCGGGGTTTCGTTGTCGAAAGATC 1201
Query 1177 TAATGGCTATTGCAGGGGAAACTCTTAAAACCAATATCACTACATTGGGTCCTCTTGTTT 1236
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1202 TAATGGCGATTGCAGGGGAAACTCTCAAAACCAATATCACTACATTGGGTCCTCTTGTTC 1261
Query 1237 TACCGATAAGCGAGCAGATTCTCTTCTTTACGACTCTAGTTGTGAAGAAACTTTTTAACG 1296
|||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1262 TACCGATAAGTGAGCAGATTCTCTTCTTTATGACTCTAGTTGTGAAGAAGCTCTTTAACG 1321
Query 1297 GTAAAGTTAAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCATTTCTGTATCCATG 1356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GTAAAGTGAAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCATTTCTGTATCCATG 1381
Query 1357 CTGGTGGAAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATG 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CTGGTGGAAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATG 1441
Query 1417 TCGAGGCTTCGAGGATGACTCTTCATCGATTTGGGAACACATCTTCAAGCTCCATTTGGT 1476
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1442 TCGAGGCTTCGAGGATGACTCTTCATCGATTTGGTAACACATCTTCGAGCTCCATTTGGT 1501
Query 1477 ATGAATTGGCTTACATTGAAGCCAAAGGAAGGATGCGAAGAGGTAATCGCGTTTGGCAAA 1536
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1502 ATGAATTGGCTTACATTGAAGCGAAGGGAAGGATGCGAAGAGGTAATCGTGTTTGGCAAA 1561
Query 1537 TCGCGTTTGGGAGTGGATTTAAATGTAATAGCGCGATATGGGAAGCATTAAGACATGTGA 1596
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1562 TCGCGTTCGGAAGTGGATTTAAATGTAATAGCGCGATTTGGGAAGCATTAAGGCATGTGA 1621
Query 1597 AACCTTCGAACAACAGTCCTTGGGAAGATTGTATTGACAAGTATCCGGTAACTTTAAGTT 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AACCTTCGAACAACAGTCCTTGGGAAGATTGTATTGACAAGTATCCGGTAACTTTAAGTT 1681
Query 1657 ATTAGCTTCGTTTGAGGAACTGTTATTGTGTAACTTGGAGACTAATCCATGGTTGttttt 1716
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1682 ATTAGCTTCGTTTGAGGAACTGTTATTGTGTAACTTCGAGACTAATCCATGGTTGTTTTT 1741
Query 1717 ttCTTAGAGAAGAAACCCTTAGATTTGATCTCTGACAATGTCAATGTGTTTGTTGTTTAT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TTCTTAGAGAAGAAACCCTTAGATTTGATCTCTGACAATGTCAATGTGTTTGTTGTTTAT 1801
Query 1777 GTGTTTTGGAGATTTTGTGATATTTGAGTTACAGTTCTTGAGCTCATGTTTTCAGATCTT 1836
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GTGTTTTGGAGAGTTTGTGATATTTGAGTTACAGTTCTTGAGCTCATGTTTTCAGATCTT 1861
Query 1837 AGATGTGTAATGACGAAATCACAG 1860
||||||||||||||||||||||||
Sbjct 1862 AGATGTGTAATGACGAAATCACAG 1885
> AT1G68530.1 | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA
synthase 6 | chr1:25712588-25714807 REVERSE LENGTH=1861
Length=1861
Score = 126 bits (68), Expect = 7e-28
Identities = 204/268 (76%), Gaps = 16/268 (6%)
Strand=Plus/Plus
Query 1305 AAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCA-TTTCTGTATCCATGCTGGTGG 1363
||||| || || ||||||||||| || || ||||| || ||| || || || || || ||
Sbjct 1200 AAACCATACATACCGGATTTCAAGCTGGCCTTCGAACACTTT-TGCATTCACGCAGGAGG 1258
Query 1364 AAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATGTCGAGGC 1423
||||| |||||||| ||| | | |||||||| || || ||| || || || |||||
Sbjct 1259 CAGAGCGGTGATCGACGAGCTCCAAAAGAATCTACAACTATCAGGAGAACACGTTGAGGC 1318
Query 1424 TTCGAGGATGACTCTTCATCGATTTGGGAACA---CATCTTCAAGCTCCATT-TGGTATG 1479
|| || ||||| || ||||| ||||| |||| ||||||| | | | || ||||| |
Sbjct 1319 CTCAAGAATGACACTACATCGTTTTGGTAACACGTCATCTTC-A--T-CGTTATGGTACG 1374
Query 1480 A-ATTGGCTTACATTGAAG-CCAAAGGAAGGATGCGAAGAGGTAATCGCGTTTGGCAAAT 1537
| || || ||||| | || | ||||| || ||| | ||||| ||||||||||||||||
Sbjct 1375 AGCTTAGC-TACATCG-AGTCTAAAGGGAGAATGAGGAGAGGCGATCGCGTTTGGCAAAT 1432
Query 1538 CGCGTTTGGGAGTGGATTTAAA-TGTAA 1564
||||||||||||||| ||| || |||||
Sbjct 1433 CGCGTTTGGGAGTGG-TTTCAAGTGTAA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5