BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472180
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19540.1 | Symbols: | NmrA-like negative transcriptional re... 1434 0.0
> AT1G19540.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:6765667-6767341 FORWARD LENGTH=1073
Length=1073
Score = 1434 bits (776), Expect = 0.0
Identities = 965/1052 (92%), Gaps = 30/1052 (3%)
Strand=Plus/Plus
Query 1 CTTCAACGAAAATAGACAGAGAGATGACGAGCAAGATTCTGGTGATTGGAGCGACAGGTC 60
||||||||||| ||| |||||||||||||||||||||||| || || ||||| |||||||
Sbjct 24 CTTCAACGAAACTAGCCAGAGAGATGACGAGCAAGATTCTAGTTATCGGAGCTACAGGTC 83
Query 61 TCATCGGAAAAGTCATCGTCGAAGG-AAGTGCCAAGTCCGGCCACGCAACTTTCGCTCTA 119
|||||||||||||| |||| | ||| ||| |||||||| |||||||| |||||||||||
Sbjct 84 TCATCGGAAAAGTCCTCGTAG-AGGAAAGCGCCAAGTCTGGCCACGCCACTTTCGCTCTG 142
Query 120 GTTAGAGAAGCCTCTCTCTCCGATCCCGTCAAGGCCCAACTCGTCGAGAGCTTCAAAGAT 179
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 143 GTTAGAGAAGCCTCTCTCTCCGATCCCGTTAAGGCCCAACTCGTTGAGAGATTCAAAGAT 202
Query 180 CTCGGCGTCACTATACTCTACGGAAGTTTAAATGATAAAGAGAGCTTAGTGAAGGCGATT 239
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 203 CTCGGCGTTACCATACTCTACGGAAGTTTAAGTGATAAAGAGAGCTTAGTGAAGGCGATT 262
Query 240 AAACAAGTCGATGTCGTGATATCAACTGTTGGTCGG---C---CTCAAATTCTTGATCAA 293
|||||||||||||||||||||||| ||||||||||| | || |||||||| |||||
Sbjct 263 AAACAAGTCGATGTCGTGATATCAGCTGTTGGTCGGTTTCAAACTGAAATTCTTAATCAA 322
Query 294 ACCAATATCATCGATGCCATCAAAGAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ACCAATATCATCGATGCCATCAAAGAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAA 382
Query 354 TTTGGCAATGACGTTGACCGTACGGTAGCCAGCGGGCCAACGCTATCAGAATTCATCACT 413
||||| |||||||| || ||||||||||||| | ||||||||||||||| |||||||||
Sbjct 383 TTTGGTAATGACGTGGATCGTACGGTAGCCATTGAGCCAACGCTATCAGAGTTCATCACT 442
Query 414 AAAGCTCAGATAAGGCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTGGTTTCA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 443 AAAGCTCAGATAAGGCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTCGTCTCA 502
Query 474 GGTTGCTTTGCAGGTCTTTTTGTTCCTTGTTTGGGTCAATGCCACTTGCTACTCAGATCT 533
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 503 GGTTGCTTTGCAGGTCTTTTTGTTCCTTGTTTGGGTCAATGCCACTTGCGACTCAGATCT 562
Query 534 CCTCCTAGAGACAAAGTTTCCATCTATGATAGTGGCAATGGCAAAGCCATTGTCAACACT 593
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 563 CCTCCTAGAGACAAAGTTTCAATCTATGATACTGGCAATGGCAAAGCCATTGTCAACACT 622
Query 594 GAAGAAGACATTGTTGCATATACATTGAAAGCTGTTGATGACCCAAGAACACTTAACAAG 653
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 623 GAAGAAGACATCGTTGCATATACATTGAAAGCTGTTGATGATCCGAGAACACTTAACAAG 682
Query 654 ATTCTCTACATTCACCCGCCCAAGAACATTGTATCGCAGAACGATATGGTTCGTTTGTGG 713
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 683 ATTCTCTACATTCACCCGCCCAATTACATTGTATCGCAGAACGATATGGTTGGTTTGTGG 742
Query 714 GAGGAAAAGATCGGTAAGACTCTCGACAAGACTAATGTTTCAGAGGAAGAACTCCTCAAA 773
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 743 GAGGAAAAGATCGGTAAGACTCTCGAAAAGACTTATGTTTCAGAGGAAGAACTCCTCAAA 802
Query 774 ACCATCCAAGAGACTG-GACTTCCAATGGATTTTTTGGTGGGTTTGATCCATACGATCCT 832
||||||||||||| | | || ||||||||||||||||||||| |||||||||| |||||
Sbjct 803 ACCATCCAAGAGAGTAAGCCT-CCAATGGATTTTTTGGTGGGTCTGATCCATACAATCCT 861
Query 833 TGTGAAGAACGACTTTACCTCCTTCACTATAGATCCTTCTTTTGGAGTTGAGGCTTCCGA 892
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TGTGAAGAGTGACTTTACCTCCTTCACTATAGATCCTTCTTTTGGAGTTGAGGCTTCCGA 921
Query 893 GCTTTACCCTGAGGTCAAGTACACAAGTGTCGATGAGTTTCTTAACCGGTTTGTCTGaaa 952
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 922 GCTTTACCCTGAAGTCAAGTACACTAGTGTTGATGAGTTTCTTAACCGGTTTATCTGAAA 981
Query 953 aaaa----GT----------GT------AGCTACTGTTGATCCGAGTTTCGATATGGACG 992
|||| || || |||||||||| || ||||||||||||||||||
Sbjct 982 AAAACTTCGTCCATTATTTTGTGTGTGTAGCTACTGTTAATTCGAGTTTCGATATGGACG 1041
Query 993 CAAATCTTATTTCAAACTAGGCTTCTTATTTG 1024
||||||||||||||| |||| || ||||||||
Sbjct 1042 CAAATCTTATTTCAAGCTAGTCTCCTTATTTG 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5