BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472181
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19570.1 | Symbols: DHAR1, ATDHAR1, DHAR5 | dehydroascorbate... 1249 0.0
AT1G19550.1 | Symbols: | Glutathione S-transferase family prot... 377 8e-104
AT1G19540.1 | Symbols: | NmrA-like negative transcriptional re... 76.8 3e-13
> AT1G19570.1 | Symbols: DHAR1, ATDHAR1, DHAR5 | dehydroascorbate
reductase | chr1:6773302-6774528 REVERSE LENGTH=917
Length=917
Score = 1249 bits (676), Expect = 0.0
Identities = 803/863 (93%), Gaps = 14/863 (2%)
Strand=Plus/Plus
Query 1 TCACTGATTAACTCAATCATTCATCCGTCGCTG----C-AAGAAAGAAGAATCAAGATGG 55
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||
Sbjct 60 TCACTGATTAACTCAATCATTCATCCGTCTCTGCAAACAAAGGAAGAAGAATCAAGATGG 119
Query 56 CTCTCGAAATCTGCGTGAAAGCTGCTGTTGGTGCTCCTGATCACCTTGGCGACTGTCCGT 115
|||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 120 CTCTGGAAATCTGTGTGAAAGCTGCTGTTGGTGCTCCTGATCATCTCGGCGACTGTCCGT 179
Query 116 TCAGCCAACGGTCTCTGCTCACACTCGAGGAGAAGAATCTTACCTACAAAATCCATCTGA 175
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TCAGCCAACGGGCTCTTCTCACACTCGAGGAGAAGAGTCTTACCTACAAAATCCATCTGA 239
Query 176 TTAACCTCTCTGACAAACCCCAGTGGTTCTTGGACATTAGTCCTCAAGGGAAAGTACCAG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTAACCTCTCTGACAAACCCCAGTGGTTCTTGGACATTAGTCCTCAAGGGAAAGTACCAG 299
Query 236 TTCTTAAGATCGACGACAAGTGGGTGACTGATTCTGACGTCATCGTTGGTATCCTCGAGG 295
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 300 TGCTTAAGATCGACGACAAGTGGGTGACTGATTCCGACGTCATCGTTGGTATACTCGAGG 359
Query 296 AGAAGTATCCTGATCCACCTCTCAAGACTCCTCCTGAATTTGCCTCTGTTGGATCCAACA 355
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AGAAGTATCCTGATCCACCACTCAAGACTCCTGCTGAATTTGCCTCTGTTGGATCCAACA 419
Query 356 TTTTCAGTACTTTCGGGACTTTCTTGAAGAGCAAAGACTCCAATGACGGATCTGAACAGG 415
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 420 TTTTTGGTACTTTTGGGACATTCTTGAAGAGCAAAGACTCCAATGACGGATCTGAACATG 479
Query 416 CCTTGCTTCATGAGCTAGAAGCCTTGGAGAGCCATCTCAAGAGTCACGATGGTCCTTTTA 475
|||||||| |||||||||||| ||||| | |||||| |||||||||||||| |||||||
Sbjct 480 CCTTGCTTGTTGAGCTAGAAGCTTTGGAAAACCATCTTAAGAGTCACGATGGCCCTTTTA 539
Query 476 TCGCAGGGGAAAGAGTTTCCGCGGTGGATCTAAGCTTAGCTCCAAAGCTTTACCATCTCC 535
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 540 TCGCCGGAGAAAGAGTTTCCGCAGTGGATCTAAGCTTAGCACCAAAGCTTTACCACCTTC 599
Query 536 AAGTCGCTCTTGGCCATTTCAAAAGCTGGTCTGTACCC-GCA-AGCTTGCCCCATGTCCA 593
|||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||
Sbjct 600 AAGTTGCTCTTGGCCATTTCAAAAGCTGGTCTGT-CCCTG-AGAGCTTTCCCCATGTCCA 657
Query 594 TAACTACATGAAGGATT-TGTTCTCTCTCGACTCCTTTGAGAAAACTAAGACCGAGGAAA 652
||||||||||||| | | ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 658 TAACTACATGAAG-ACTCTGTTCTCGCTCGACTCTTTTGAGAAAACTAAGACCGAGGAAA 716
Query 653 AGTATGTGATCTCTGGATGGGCTCCCAAGGTCAACCCTTGAAACTATGCACCGTTATGAG 712
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 AGTATGTGATCTCTGGATGGGCTCCCAAGGTTAACCCTTGAAACTATGCACCGTTATGAG 776
Query 713 ATTGTTGGTGTGGTAACGTTGTTCAAGGTCTCTCTCTCTTATATCAGTCAAATAATGTAC 772
|| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 777 ATCGTTGGTGTGGTAATGTTGTTCAAGGTCTCTCTCT-T-ATATCAGTCAAATAATGTAC 834
Query 773 TTGGACCTTTT-ATTTTATGTATTGTATCAACCAAATAAGAAGCCTAGTTTGAAATAAGA 831
||||||||||| || | ||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 835 TTGGACCTTTTTATGTAATGTACTGTATCAATCAAATAAGAAGCCTATTTTGAAATAAGA 894
Query 832 TTTGCGTCCATATCGAAACTCGG 854
||||| |||||||||||||||||
Sbjct 895 TTTGCCTCCATATCGAAACTCGG 917
> AT1G19550.1 | Symbols: | Glutathione S-transferase family protein
| chr1:6767451-6767983 REVERSE LENGTH=462
Length=462
Score = 377 bits (204), Expect = 8e-104
Identities = 245/264 (93%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 433 GAAGCCTTGGAGAGCCATCTCAAGAGTCACGATGGTCCTTTTATCGCAGGGGAAAGAGTT 492
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 202 GAAGCTTTGGAGAACCATCTCAAGAGTCACGATGGTCCTTTTATCGCCGGGGAAAGAGTT 261
Query 493 TCCGCGGTGGATCTAAGCTTAGCTCCAAAGCTTTACCATCTCCAAGTCGCTCTTGGCCAT 552
|||||||||||||| |||||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 262 TCCGCGGTGGATCTTAGCTTAGCACCAAAGCTTTACCACCTTCAAGTTGCTCTTGGCCAT 321
Query 553 TTCAAAAGCTGGTCTGTACCC-GCA-AGCTTGCCCCATGTCCATAACTACATGAAGGA-T 609
||||||||||||||||| ||| | | ||||| ||||||||||||||||||||||| || |
Sbjct 322 TTCAAAAGCTGGTCTGT-CCCTG-AGAGCTTTCCCCATGTCCATAACTACATGAA-GACT 378
Query 610 TTGTTCTCTCTCGACTCCTTTGAGAAAACTAAGACCGAGGAAAAGTATGTGATCTCTGGA 669
||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 CTGTTCTCGCTCGACTCTTTTGAGAAAACTAAGACCGAGGAAAAGTGTGTGATCTCTGGA 438
Query 670 TGGGCTCCCAAGGTCAACCCTTGA 693
||||||||||||||||||||||||
Sbjct 439 TGGGCTCCCAAGGTCAACCCTTGA 462
Score = 257 bits (139), Expect = 1e-67
Identities = 153/160 (96%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 201 GTTCTTGGACATTAGTCCTCAAGGGAAAGTACCAGTTCTTAAGATCGACGACAAGTGGGT 260
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 42 GTTCTGGGACATTAGTCCTCAAGGGAAAGTACCAGTGCTTAAGATCGACGACAAGTGGGT 101
Query 261 GACTGATTCTGACGTCATCGTTGGTATCCTCGAGGAGAAGTATCCTGATCCACCTCTCAA 320
||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GACTGATTCCGACGCCACCGTTGGTATCCTCGAGGAGAAGTATCCTGATCCACCTCTCAA 161
Query 321 GACTCCTCCTGAATTTGCCTCTGTTGGATCCAACATTTTC 360
||||||| ||||||||||||||||||| ||||||||||||
Sbjct 162 GACTCCTGCTGAATTTGCCTCTGTTGGCTCCAACATTTTC 201
> AT1G19540.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr1:6765667-6767341 FORWARD LENGTH=1073
Length=1073
Score = 76.8 bits (41), Expect = 3e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 804 CAAATAAGAAGCCTAGTTTGAAATAAGATTTGCGTCCATATCGAAACTCG 853
|||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1073 CAAATAAGGAGACTAGCTTGAAATAAGATTTGCGTCCATATCGAAACTCG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5