BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472186

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19610.1 | Symbols: LCR78, PDF1.4 | Arabidopsis defensin-lik...   625    1e-178


> AT1G19610.1 | Symbols: LCR78, PDF1.4 | Arabidopsis defensin-like 
protein | chr1:6781483-6782039 REVERSE LENGTH=443
Length=443

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 399/427 (93%), Gaps = 9/427 (2%)
 Strand=Plus/Plus

Query  1    ACAA-AAATAAGCCATGGCTTCTTCTTACACCCTTATGCTCTTCCTTTGCCTCTCCATCT  59
            |||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  3    ACAACAAA-AAGTCATGGCTTCTTCTTACACACTTATGCTCTTCCTTTGCCTCTCCATCT  61

Query  60   TCCTTATCGCTTCTACTGAGATGATGGCGGTGGAAGCAAGAATTTGCGAGAGGCGAAGCA  119
            ||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  62   TCCTTATAGCTTCCACTGAGATGATGGCGGTGGAAGGAAGAATTTGCGAGAGGAGAAGCA  121

Query  120  AGACATGGACAGGGTTTTGTGGCAACACTCGTGGCTGTGACAGTCAGTGTAAGAGTTGGG  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  122  AGACATGGACAGGGTTTTGTGGCAACACTCGTGGCTGTGACAGTCAGTGTAAGAGATGGG  181

Query  180  AACGTGCTTCACACGGGGCTTGTCACGCTCAGTTCCCGGGTTTCGCATGTTTCTGCTACT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  AACGTGCTTCACACGGGGCTTGTCACGCTCAGTTCCCGGGTTTCGCATGTTTCTGCTACT  241

Query  240  TCAATTGCTGAAGCAAGCATACTCTTAAGAGTTGTGTGGATCTTCTTCCA-GTGTCACTG  298
            |||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||| 
Sbjct  242  TCAATTGCTGAAGCAAGCATACTCTTAAGAGTTGTGTGAATCTTCTTCAACG-GTCACT-  299

Query  299  TTT-TATCTTGTAGCAAATCGTAGTCCCTATATGGCAAAACCATAACCTTTAGCTTGTGT  357
            ||| |||||||||||||||| || |||||||||| ||||||| | | |||||||||| ||
Sbjct  300  TTTATATCTTGTAGCAAATCCTAATCCCTATATGTCAAAACCGTTATCTTTAGCTTGGGT  359

Query  358  T-CAGTAATAAAAATTCCC-TTTCGTTTTTTGGGAATTTTCTGTGATAAAATCTATAATA  415
            | ||||||||||||||||| ||| |||||| ||||||||||| ||||||||| |||||||
Sbjct  360  TTCAGTAATAAAAATTCCCCTTTGGTTTTT-GGGAATTTTCTTTGATAAAATATATAATA  418

Query  416  AGAGACT  422
            |||||||
Sbjct  419  AGAGACT  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5