BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472192
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19660.1 | Symbols: | Wound-responsive family protein | chr... 1938 0.0
AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in ... 913 0.0
> AT1G19660.1 | Symbols: | Wound-responsive family protein | chr1:6799981-6802685
REVERSE LENGTH=1412
Length=1412
Score = 1938 bits (1049), Expect = 0.0
Identities = 1256/1352 (93%), Gaps = 30/1352 (2%)
Strand=Plus/Plus
Query 29 TGCTCTCTGTTGATCTGTCTGTGTGGGATTCTTCCTTTAG-TCCTCTGTTGATCTATCCA 87
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 42 TGCTCTTTGTTGATCTGTCTGTGTGGGATTCTTCCTTTAGTTCCTCTGTTGATCTATCCA 101
Query 88 GTCGAATCTTAC-AAAATTTTTAGAGTGAAGATGAGGTCGCTTCAAGCACCGATTGTTTG 146
||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 102 ATCGAATCTTACGAAAA-TTTTCGAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTG 160
Query 147 CCCTAGTGTTCGTCCTAGACAACTGGGTGTCTCTGCTTCACTAGTCAACTGCTCTGTTTC 206
||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 161 CCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTC 220
Query 207 GAAAACTAGGAGTCTCGGAAACCAATTCTGGGGTAATCAGACCAGAAATGTCAAGTCTCA 266
|||||||||||||||| |||| |||||||||||||| ||||||| ||||| |||||||||
Sbjct 221 GAAAACTAGGAGTCTCAGAAAACAATTCTGGGGTAACCAGACCAAAAATGACAAGTCTCA 280
Query 267 GGTTGCTACAGTGAATC-T--TC-G-----TCGGAGGTCTAAGAGTATAC-AATGTCTTT 316
|| |||||||||||||| | || | |||||||| ||||||||| | |||||||||
Sbjct 281 GGCTGCTACAGTGAATCTTCGTCTGCATCTTCGGAGGTATAAGAGTAT-CAAATGTCTTT 339
Query 317 TCAGCTCGCATTCTGATGGTACCGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGG 376
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCAGCTCGCACTCTGATGGTACCGGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGG 399
Query 377 ATTATGTTAAGTCTAGTGTATTGGAAGCTGTTGAGGTAAAGAGTGGACCAGATGGTTTCA 436
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 400 ATTATGTCAAGTCTAGTGTATTGGAAGCTGTTGAGGTAAAAAGTGGACCAGATGGTTTCA 459
Query 437 TGGTGAAGATGAAAGATGGGAGGCAACTTCGATGTGTTCACAATAATCCTCAAGGAGGGA 496
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 460 TGGTGAAGATGAAGGATGGGAGGCAACTTCGATGTGTCCACAATAATCCTCAAGGAGGGA 519
Query 497 ATCTCCCAAATTATGCTCCACATTCTGCAATTGTGCTGAAAATGGAAGATGGAACGGGTC 556
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 520 ATCTTCCAAATTATGCTCCACATTCTGCAATTGTGCTGAAAATGGAAGATGGAACTGGTC 579
Query 557 TTCTTCTTCCTATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATAGCAGCAATGACAA 616
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 580 TTCTTCTCCCCATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACAA 639
Query 617 ATGTTCAAATAGCAAGACCCACTATGTATCAAGTGGTGAAGGAGATGGTAGACAAAATGG 676
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 640 ATGTTCAAATAGCAAGGCCCACTATGTATCAAGTGGTGAAGGACATGGTAGACAAAATGG 699
Query 677 GTTATGAGGTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGT 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTTATGAGGTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGT 759
Query 737 TATACCTTTCAAAGGTGGGTAATAAGTTGGAGTGCGTTAGCTTTGATCTTCGTCCTTCTG 796
||||||||||||||||||| |||||| ||| || || ||||| ||||||||||||||||
Sbjct 760 TATACCTTTCAAAGGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTG 819
Query 797 ATGCAATTAATATAGCTGTGAGATGCAAGGTACCTATCCAAGTCAACAAGTATCTAGCTT 856
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 820 ATGCAATTAATATAGCTGTTAGATGCAAGGTACCTATTCAAGTCAACAAGTATCTAGCTT 879
Query 857 ATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCAG 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 880 ATAGTGATGGAATGAGAGTCATCGATTCCGGAAAGCTATCAAAGCAAACACCTGCTTCTG 939
Query 917 ATGGTTTATTGTTTACTGAACTAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ATGGTTTATTGTTTACTGAACTAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAG 999
Query 977 AATTCGATCTATTAAGGAACATGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCG 1036
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AGTTCGATCTAGTAAGGAACATGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCG 1059
Query 1037 CTGAGTGGAGAGACAAGCTTGGCCAGTTTCAGGCAAAACGCAAATTAAGGAAATACACAT 1096
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTGAGTGGAGAGACAAGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACAT 1119
Query 1097 GACAGGTAT-A-ATGC-AGCTCGCAGACAAATACATAATGTATGTAAATAATAAAGAAGC 1153
||||| | | | | || | | || |||||||| ||||||||||||||||||||
Sbjct 1120 GACAGCTCGCAGACGGGAG-T-GTTTTTAA-TACATAATTTATGTAAATAATAAAGAAGC 1176
Query 1154 CAATTGCCATTTGCC-GAAGCTGTAATCATGAAGAAAAATATCTCTCTAGTAT-ATGATA 1211
|| |||||||||||| |||| ||| ||||||||||||||||||||||| |||| | ||||
Sbjct 1177 CA-TTGCCATTTGCCAGAAGTTGTGATCATGAAGAAAAATATCTCTCTCGTATGA-GATA 1234
Query 1212 --CTTTTCTCTATCTACACTTGTGCACGTAGTTGATTCTCAAGAAACGGACAAAATaaaa 1269
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1235 TACTTTTCTCTATCGACACTTGTGCACGTAGTTGATTCTCAAGGAACGGACAAAATAAAA 1294
Query 1270 aaaaTGTTATGTAATTGTAGCGTGATGGTGATGTGATGTGTACAATATACATTAATCTTT 1329
| | || | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1295 ATGTTATTTTATAATTGTAGCGTGATGGTGATGTGATGTGTACA-TATACATTAATCTTC 1353
Query 1330 TGTAATG-TAT--GGTAAGCCTAAGCCTTCTC 1358
|||||| ||| |||||||||| || |||||
Sbjct 1354 TGTAATAATATATGGTAAGCCTACGCTTTCTC 1385
> AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
basal defense response 1 | chr1:28281389-28284045 REVERSE
LENGTH=1550
Length=1550
Score = 913 bits (494), Expect = 0.0
Identities = 838/1001 (84%), Gaps = 35/1001 (3%)
Strand=Plus/Plus
Query 114 GAAGATGAGGTCGCTTCAAGCACCGA-TTGTTTGCCCTAG-TGTTCGTCCTAGACAACTG 171
||||||||| ||| |||||||||| | ||||||| ||| | |||| || |||||| |
Sbjct 169 GAAGATGAGATCGGTTCAAGCACC-AGTTGTTTGTCCT-GCAATTCGACCAAGACAAGTA 226
Query 172 GGTGTC-TCTGCTTCACTAGTCAACTGCTCT-GTTTCGAAAACTAGGAGTCTCGGAAACC 229
|||| | | ||||||||||||||||| | || || | | |||| || ||| ||
Sbjct 227 GGTG-CATGTGCTTCACTAGTCAACTACACTGGTCT-G-AAAC-------CT-AGAAGCC 275
Query 230 AATTCTGGGGTAATCAGACCAGAAA--TGTCAAGTCTCAGGTTGCTA-CA-GTGAATC-T 284
|||| |||||||||| || || ||| |||||||||||||| ||| || ||||
Sbjct 276 AATTTTGGGGTAATCGGA-CA-AAAGGTGTCAAGTCTCAGGGCACTACCACAACAATCAC 333
Query 285 TCGTCGGA-GGT-C--TAAGAGTATACAA-TGTCTTTTCAGCTCGCATTCTGATGGTACC 339
|| | || || | |||||||| ||| ||| |||||||||| || ||||||||||
Sbjct 334 TC-TTAGATTGTGCAACAAGAGTAT-CAAGTGTGTTTTCAGCTCTCACTCTGATGGTAAT 391
Query 340 GGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTTAAGTCTAGTGTATTG 399
|||||||| || || |||||||| || || |||||||| |||||||| ||||||||| ||
Sbjct 392 GGAAGCACTGCTGAAAATTTCAATGAAAATGATGAGGAATATGTTAACTCTAGTGTAGTG 451
Query 400 GAAGCTGTTGAGGTAAAGAGTGGACCAGATGGTTTCATGGTGAAGATGAAAGATGGGAGG 459
||||||||||| ||||| |||||| |||||||||| ||||||||||||| ||||| |||
Sbjct 452 GAAGCTGTTGAAGTAAAAAGTGGAGCAGATGGTTTTATGGTGAAGATGAGGGATGGTAGG 511
Query 460 CAACTTCGATGTGTTCACAATAATCCTCAAGGAGGGAATCTCCCAAATTATGCTCCACAT 519
||||| |||||||| || || ||||||||||||||| || | ||| |||||||||||||
Sbjct 512 CAACTACGATGTGTCCATAACAATCCTCAAGGAGGGCATTTACCAGATTATGCTCCACAC 571
Query 520 TCTGCAATTGTGC-TGAAAATGGAAGATGGAACGGGTCTTCTTCTTCCTATTATCGTCTT 578
|||| ||||| | ||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 572 CCTGCTATTGT-CTTGAAAATGGAAGATGGAACTGGTCTTCTCCTTCCGATTATCGTCTT 630
Query 579 GGAGATGCCTAGTGTGTTACTTATAGCAGCAATGACAAATGTTCAAATAGCAAGACCCAC 638
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||
Sbjct 631 GGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACCAATGTCCAAATTGCAAGACCAAC 690
Query 639 TATGTATCAAGTGGTGAAGGAGATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTAG 698
|||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||||||
Sbjct 691 CATGTATCAAGTGGTGAAGGAAATGGTGGACAAGATGGGTTACGAAGTTAGACTTGTTAG 750
Query 699 AGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGTAA 758
||| |||| ||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 751 AGTCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGGTGGGTAA 810
Query 759 TAAGTTGGAGTGCGTTAGCTTTGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTGAG 818
| | |||||| || |||||||||||| | ||||| |||||||| ||||||||||| ||
Sbjct 811 TGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCAATCAATATAGCTGTTAG 870
Query 819 ATGCAAGGTACCTATCCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCAT 878
||||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 871 ATGCAAGATACCTATCCAAGTGAACAAGTACCTTGCATATAGTGATGGAATGAGAGTCAT 930
Query 879 CGATTCCGGAAAGCTATCAA-AGCAAACACCTGCTTCAGATGGTTTATTGTTTACTGAAC 937
|| || || ||| |||||| | | |||| ||||||||||||||||| ||||||||||
Sbjct 931 TGAGTCAGGGAAGATATCAACACCGG-CACCAGCTTCAGATGGTTTATTATTTACTGAAC 989
Query 938 TAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAATTCGATCTATTAAGGAACA 997
|||||| |||||||||||| ||||| ||||||| ||||| ||| || | || || || |
Sbjct 990 AAGACCGACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAA 1049
Query 998 TGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1057
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1050 TGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1109
Query 1058 GCCAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA 1098
| ||||||| ||| ||||| || || |||||||||||||||
Sbjct 1110 GTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5