BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472193
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19670.1 | Symbols: ATCLH1, CORI1, ATHCOR1, CLH1 | chlorophy... 1631 0.0
> AT1G19670.1 | Symbols: ATCLH1, CORI1, ATHCOR1, CLH1 | chlorophyllase
1 | chr1:6803611-6805044 REVERSE LENGTH=1281
Length=1281
Score = 1631 bits (883), Expect = 0.0
Identities = 1040/1113 (93%), Gaps = 21/1113 (2%)
Strand=Plus/Plus
Query 1 AATGGATCGGATAAGAAAAATCCACATTCTCCCCCTATAAATA-GAAACAACTAGCTAAA 59
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2 AATGAATCGGATAAGAAAAATCAACATTCTCCCCCTATAAATACAAAACAACTAGCTAAA 61
Query 60 GCTCGAAAGATTCATAC----A---T----A-AA-TCTTTAA-CA-C-AGTTTAATACAA 103
| ||||| ||||||||| | | | || ||||||| | | ||||||||||||
Sbjct 62 GTTCGAAGGATTCATACATAAATCTTCAACACAACTCTTTAATTATCTAGTTTAATACAA 121
Query 104 ATGGCGACGATAGAGGACAGTCCAACGTTTTTCTCTGCGGCAACTCCGGCAGCGTTTGAG 163
|||||| |||||||||||||||||||||||| ||||| || ||||||||| || ||||||
Sbjct 122 ATGGCGGCGATAGAGGACAGTCCAACGTTTTCCTCTGTGGTAACTCCGGCGGCTTTTGAG 181
Query 164 ATAGGCAGTCTTCCGACAGCCGAAATACCGGTGGACCCGTTGGAAAATGATTCAACAGCA 223
|||||||| || |||||| |||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 182 ATAGGCAGCCTCCCGACAACCGAGATACCGGTGGATCCGGTGGAAAATGATTCAACAGCA 241
Query 224 CCGCCAAAGCCGGTGAGAATCACCTGTCCAACAGTCGCCGGAACTTTTCCCGTCGTCTTA 283
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 242 CCGCCAAAACCGGTGAGAATCACCTGTCCAACAGTCGCCGGAACTTATCCCGTCGTTTTA 301
Query 284 TTCTTCCATGGCTTTTATCTTCGCAACTACTTCTACTCTGACGTTATTAACCACGTCGCT 343
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 302 TTCTTCCATGGCTTTTATCTTCGCAACTACTTCTACTCTGACGTTCTTAACCACATCGCT 361
Query 344 TCTCATGGCTACATTCTTGTAGCCCCACAGCTGTGCAAATTATTGCCGCCGGGAGGGCAA 403
|| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 TCGCATGGTTACATTCTTGTAGCCCCACAGTTGTGCAAATTATTGCCGCCGGGAGGGCAA 421
Query 404 GTGGAAGTGGACGATGCTGGAAGTGTGATAAACTGGGCATCGGAAAACCTCAAAGCTCAC 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GTGGAAGTGGACGATGCTGGAAGTGTGATAAACTGGGCATCGGAAAACCTCAAAGCTCAC 481
Query 464 CTACCAACTTCGGTAAATGCTAATGGCAAATACACCTCACTCGTGGGCCACAGCCGCGGT 523
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 482 CTACCAACTTCGGTAAATGCTAATGGAAAATACACCTCACTCGTGGGCCACAGCCGCGGT 541
Query 524 GGGAAAACCGCGTTCGCGGTTGC-CTTAGGCCATGCCGCAACATTAGACCCATCCATCAA 582
|||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 542 GGGAAAACGGCGTTTGCGGTTGCGCT-AGGCCATGCCGCAACATTAGACCCATCCATCAC 600
Query 583 GTTTTCAGCTCTAATAGGGATCGATCCAGTCGCAGGAACCAACAAATTCATGAGAACCGA 642
|||||||||||||||||| || ||||||||||||||||| ||||||| ||| ||||||||
Sbjct 601 GTTTTCAGCTCTAATAGGAATTGATCCAGTCGCAGGAACTAACAAATACATTAGAACCGA 660
Query 643 TCCGCATATCTTAACGAATAAACCGGAATCGTTCGATCTGGACATACCGGTTGCAGTGGT 702
|||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 661 TCCGCATATCTTAACGTATAAACCGGAATCTTTCGAGCTGGACATACCGGTTGCAGTGGT 720
Query 703 GGGAACCGGACTCGGACCAAAGTGGAACAACGTGATGCCACCATGCGCACCAACGGACTT 762
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGAACCGGACTCGGACCGAAGTGGAACAACGTGATGCCACCATGCGCACCAACGGACTT 780
Query 763 AAACCATGAGGAGTTTTACAAAGAGTGTAAGGCGACGAAAGCCCATTTTGTGGCTGCGGA 822
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 AAACCATGAGGAGTTTTACAAAGAGTGTAAGGCGACGAAAGCCCATTTCGTGGCTGCGGA 840
Query 823 TTACGGACATATGGATATGTTGGACGATGATTTGCCCGGTTTT-TTCGGGTTTATGGCCG 881
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 841 TTACGGACATATGGATATGTTGGACGATGATTTGCCCGGTTTTGTT-GGGTTTATGGCCG 899
Query 882 GTTGTATGTGTAAGAATGGGCAAAGAAAAAAGTCTGAGATGAGGAGTTTTGTGGGTGGGA 941
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 900 GTTGTATGTGTAAGAATGGGCAAAGAAAAAAGTCTGAGATGAGGAGCTTTGTAGGTGGAA 959
Query 942 TTGTGGTTGCGTTTCTCAAGTATAGTTTGTGGGGTGAAAAATCGGAGATTCGATTGATTG 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 TTGTGGTTGCGTTTCTCAAGTATAGTTTGTGGGGTGAAAAAGCGGAGATTCGATTGATTG 1019
Query 1002 TGAAGGATCCTTCCGTTTCTCCGGCGAGGATTGATCCTTCGCCGGAGTTGGAAGAAGCGT 1061
||||||||||||||||||||||||| | | |||||||||| || |||||||||||||| |
Sbjct 1020 TGAAGGATCCTTCCGTTTCTCCGGCCAAGCTTGATCCTTCACCTGAGTTGGAAGAAGCTT 1079
Query 1062 CTGGCATCTTTGTCTAGATTTGTGTTATGTACT 1094
|||| ||||| ||||||||||||||||||||||
Sbjct 1080 CTGGTATCTTCGTCTAGATTTGTGTTATGTACT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5