BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472194
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1... 1927 0.0
AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1... 575 5e-163
> AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1:6805457-6807862
FORWARD LENGTH=1805
Length=1805
Score = 1927 bits (1043), Expect = 0.0
Identities = 1358/1504 (90%), Gaps = 45/1504 (3%)
Strand=Plus/Plus
Query 224 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGATAGAAATCTTCCTAGTGG 283
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 281 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGACAGAAATGTTCCCAGTGG 340
Query 284 AGCTATTCATAATCCAGTGTGCTCACCACCGTGGAGTTTTCGATGGGACAACAGGAGGCG 343
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 341 AGCTATTGATAATTCAGTGTGTTCACCATCGTGGAGTTTTCGACGGGACAACAGGAGGCG 400
Query 344 TGTAGCTGATGAAATTAAAGA-T--TC--ATC-T-A-------A-T-----CA-T-A-AT 380
|||||||||||| |||||||| | || ||| | | | | | | | ||
Sbjct 401 TGTAGCTGATGAGATTAAAGATTCATCTAATCATAATGTTGGGAGTAGAGGTATTGACAT 460
Query 381 -GATAAGTTGTCGTTAGGGTTAGAGAGAGGACCT-C--CATCTGAAA---GGGATTTAGC 433
||||||||||||||||| ||||||||||||||| | ||||||||| ||| ||||||
Sbjct 461 CGATAAGTTGTCGTTAGGCTTAGAGAGAGGACCTCCGTCATCTGAAACTGGGGGTTTAGC 520
Query 434 TATTCCTGCCTCTCATAAA-CCTGCAGACTCAGAGATGGGCACAGCTTCGATGATTACGG 492
|| || || |||||| ||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 521 TACTCTTGGCTCTCAGAAATCC-GCAGACTCAGAGATGGGCACAGCTTCGATGGTTACAG 579
Query 493 CTCCTTTAACTGGCAAAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGATAAGTC 552
|||||||| | || | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 580 CTCCTTTAGCGGGTACAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGGCAAGTC 639
Query 553 CTGTTCATGTTGAGGTGAAGAATATAGTTCACTCACCAGATATTGTTTCATCAGTTTTAC 612
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 640 CTGTTCGTGTTGAGGTGAAGAATATAGTTGACTCATCAGATATTGTTTCATCAGTTTTAC 699
Query 613 CAAATCCTTCAAGTTCCACCTCGGTCTCTGATCTTCCATCGGGTCTCACACATTCGCTTC 672
||||||| ||||||||||||||||||||||||||||| || | || ||||||||| ||||
Sbjct 700 CAAATCCGTCAAGTTCCACCTCGGTCTCTGATCTTCCTTCAGCTCACACACATTCACTTC 759
Query 673 CTCCCAGATCAACTCCAACTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 732
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CTCCCAGATCAACTCCGTCTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 819
Query 733 AGGTTTCTGATAGTCAAACTTTGGGACTGAAATCACCCAACAATTACTCAATATCTGAAG 792
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||
Sbjct 820 AGGTTTCTGATAGTCAAACTTTGGGATTGAAATCTCCCAATAATTACTCAACATCTGAAG 879
Query 793 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGTCACTGGGTCCCATAATA 852
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 880 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGCCACTGGGTCCCATTTTG 939
Query 853 CTTCTTCTGAAGGTGGCTGGTCCATGAACGCCTTTTGTGAGCTCGTGTCTCAATCTCAAA 912
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 940 CTTCTTCTGAAGGTGGCTGGTCCATAAACGCCTTTTGTGAGCTCGTGGCTCAGTCTCAAA 999
Query 913 GGGAGAGATGGTCGTTTGATAGTGAGCACTTAGGTTCTGGAATACGAAGACTAAGTGGGT 972
||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1000 GGGAGAGATGGTCTTTTGATAATGAGCACTTAGGTTCCGGACGACGAAGACTAAGTGGGT 1059
Query 973 GTAGTAGTAGCAGATTCTCGTGCTCCCCTTCTGTAGATCGGCAGACTTGTGGGAATTGCT 1032
||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||
Sbjct 1060 GTAGTAGTAGCAGATTCTCATGCTCCCCTTCTGTTGATCAGCAGACTTGTGGGCGTTGCT 1119
Query 1033 CAAAGCTTTTAACTGAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTC 1092
|||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1120 CAAAGCTTTTAACTGAAAGGTCTCCAGTTGCCAGGTTTGACCTTCCAATTCCTGCTGTTC 1179
Query 1093 TAGCGTGTGGCCATGTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGA 1152
||||||| ||||||||||||||||| | |||||||||||||||||||| ||| |||||||
Sbjct 1180 TAGCGTGCGGCCATGTTTACCATGCGGCATGCTTAGAGACAATGACAAATGAAACAGAGA 1239
Query 1153 AGTATGATCCTACATGTCCCATATGCGCAGAGACGCAAGTTACTAAATTATCGAGGAAAG 1212
||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1240 AGTATGATCCTACGTGTCCCATATGCACAGAGACACAGGTTACTAAATTATCGAGGAAAG 1299
Query 1213 CTCTAAAGGCGGAG-CAAGAATTGAAGGCAACGAGTTACAAAAGATGTAAGAACCATGTG 1271
||||||| || ||| || |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1300 CTCTAAAAGCCGAGGCA-GAATTGAAGGCAACGAGTTACAAAAGGTGTAAGAACCGTGTG 1358
Query 1272 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTGTGTTCCAGAAACTAGGGAAGCGA 1331
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1359 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTATGTTCCAGAATCTAGGGAAACGA 1418
Query 1332 GAAGGAAAAGGTCTAAAGATAGATCCTAGTTC-AAGTACCAAAGGCTCCACGTCTAAGTC 1390
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1419 GAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAAAGGCTCCACGTCTAAGTC 1477
Query 1391 TTTTATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAAGTCAGGGATTCTAC 1450
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1478 TTTTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAAGCCAGGGATTCTAC 1537
Query 1451 CTCGAAGAAAAGCTTTTGGCCCAGACATAGTAATAAAAGATTAAGTCATACTTCTTCAAG 1510
||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1538 CTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAG 1597
Query 1511 CGTTGAGAGCTTTAATCAGACAACATGACATAAAAGAGGACTGGCTTTGGATTAGAGAGA 1570
||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1598 CGTTGAGGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAA 1657
Query 1571 AGATGCCTTTAACATTTTGTATCCCTCTT--CTTTTATTC-ATGTTTCATTGTCACATGG 1627
|| | |||| |||||||||||||||| || ||||||||| |||||| | ||||||||||
Sbjct 1658 AGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTTAAATGTCACATGG 1717
Query 1628 G-ACAACGGTGTGTATACCAGTGAAACAAAATTTGTCATTTTGGAGAATGCAGAAGaaa- 1685
| | || |||||| ||| ||||||||| || ||||||||| |||||||||||||||
Sbjct 1718 GGAAAATA-TGTGTA--CCAATGAAACAAACTT-GTCATTTTGTAGAATGCAGAAGAAAC 1773
Query 1686 aaaa 1689
||||
Sbjct 1774 AAAA 1777
Score = 270 bits (146), Expect = 3e-71
Identities = 211/239 (88%), Gaps = 17/239 (7%)
Strand=Plus/Plus
Query 1 AAAAAGGAGAGAGGAAGGGTGACGTGGCAC-AGTTCTCCTGTGACGCACCCAACCTCCG- 58
|||||| ||||||||||||||||||||||| | ||| |||| |||||||||||||||||
Sbjct 4 AAAAAGAAGAGAGGAAGGGTGACGTGGCACAATTTC-CCTGCGACGCACCCAACCTCCGT 62
Query 59 ---tctctctctc---t-------cATCTCCGTCGAGTAATTGAAATCGCTCTCAGCCGT 105
|||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 63 CTCTCTCTCTCTCAGATCGGCGGCCATCTCCGTCGAGTAATTGAAATCTCTCTCAGCCGT 122
Query 106 TGGATTCGAATTCCGCCGTATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 165
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TGGATTCGAATTCCGCCGCATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 182
Query 166 ATCTTAATTGTGATT-GCTACTGTGATACGTTCTTCAATGGTAAATTAGGAAGCACCAC 223
||| ||||||| || |||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 183 CTCTGAATTGTGGTTTGCTACTGTGATAAGTTCTTCAGTGGTAGATTAGGAAGCACCAC 241
> AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1:28296919-28299686
FORWARD LENGTH=1948
Length=1948
Score = 575 bits (311), Expect = 5e-163
Identities = 662/825 (80%), Gaps = 49/825 (6%)
Strand=Plus/Plus
Query 641 TGATCTTCCATCGGGTCTCACACATTCGCTTCCTCCCAGATCAACTCCAACTAGACGTGC 700
||||||| |||||| || ||| | || ||||||||| | ||| || ||| | ||||| ||
Sbjct 817 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 876
Query 701 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAACTTTGGGAC 759
||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 877 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGAC 935
Query 760 TGAAATCACCC----AACAATTACTCAATATCTGAAGGAAGGTCGTCCTTTGTGCTTTCG 815
||||||| ||| || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 936 TGAAATC-CCCAATTAATAATTACTCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCG 994
Query 816 ACCTGTAGTAATGACA-CTGTCACTGGGTCCCA-TAATACTTCTTCTGAAGGTGGCTGGT 873
|||||||| |||||| | | |||||| ||||| || | |||||||||||||||||||
Sbjct 995 ACCTGTAGCAATGACTTC-GCCACTGGATCCCAGTACG-CATCTTCTGAAGGTGGCTGGT 1052
Query 874 CCATGAACGCCTTTTGTGAGCTCGTGTC-TCAATCTCAAAGGGAGAGATGGTCGTTTGAT 932
| |||||| | |||| |||||||||| | | | ||||||||||| |||||||| ||||||
Sbjct 1053 CTATGAACACTTTTTCTGAGCTCGTGGCAT-ATTCTCAAAGGGATAGATGGTCCTTTGAT 1111
Query 933 AGTGAGCACTTAGGTTCTGGAATACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTCTC 991
|| || ||||| |||||||| | ||| || ||||||||| || |||| |||||||||||
Sbjct 1112 AGCGAACACTTGGGTTCTGGCAGACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTCTC 1167
Query 992 GTGCTCCCCTTC--T-GTAGATCGGCAGACTTGTGG-GAATTGCTCAAAGCTTT-TAACT 1046
| ||||||||| | || |||| |||| |||||| | ||| |||||| || ||||
Sbjct 1168 ATTCTCCCCTTCCGTTGTTGATCAGCAGGTTTGTGGAGC-TTGTTCAAAG-TTGCTAACC 1225
Query 1047 GAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTCTAGCGTGTGGCCAT 1106
||||||||||| || |||| ||||| || ||||| |||||||||| || ||||| |||
Sbjct 1226 GAGAGGTCTTCTATAGCCACTTTTGAGCTCCCAATCGCTGCTGTTCTTGCCTGTGGTCAT 1285
Query 1107 GTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGAAGTATGATCCTACA 1166
|||||||| ||||| ||||||||||| ||||| | ||| | |||||||||||||||| |
Sbjct 1286 GTTTACCACGCAGAGTGCTTAGAGACCATGACTACTGATATAGAGAAGTATGATCCTGCT 1345
Query 1167 TGTCCCATATGCGCA---GAG-ACGCAA-G--TTACTAAATTATCGAGGAAAGCTCTAAA 1219
|||||||||||| || | | | | || | || | ||| || | |||||||| |||||
Sbjct 1346 TGTCCCATATGCACAATTGGGGA-GAAACGGGTTGCGAAAATAACAAGGAAAGCCCTAAA 1404
Query 1220 GGCGGAG-CAAGAATTGAAGGCAACG-AGTTACAAAAGATGTAAGAACCATGTGGTAGAT 1277
|||||| | ||| ||||||| | ||| ||||||||||||| |||| ||||||||||
Sbjct 1405 AGCGGAGGCG-GAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGGTAGAT 1462
Query 1278 AGTTATG-TCCGCAGTGAATGTGAGGA-TCTTGTGTTCCAGAAACTAGGGAAGCGAGAAG 1335
||||| | | | |||||||| || || | |||| ||||||||| | ||||| |||||||
Sbjct 1463 AGTTACGGTGAG-AGTGAATGCGATGAGT-TTGTATTCCAGAAAATGGGGAAACGAGAAG 1520
Query 1336 GAAAAGGTCTAAAGATAGATCCTAGTT-CAAGTACCAA-AGGCTCCACGTC-TAAGTCTT 1392
| |||| ||| ||| | || |||||| || ||| ||| || ||| | | |||||| |
Sbjct 1521 GCAAAGCTCTCAAGCTGGAAGCTAGTTGCA-GTAGCAAGAG-CTCGTC-TAATAAGTCAT 1577
Query 1393 T-TATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAA 1436
| | ||||||||||||| | ||| ||||| ||||||||| ||||
Sbjct 1578 TCT-TGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAA 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5