BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472196
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19700.1 | Symbols: BEL10, BLH10 | BEL1-like homeodomain 10 ... 3040 0.0
> AT1G19700.1 | Symbols: BEL10, BLH10 | BEL1-like homeodomain 10
| chr1:6809744-6812657 REVERSE LENGTH=2022
Length=2022
Score = 3040 bits (1646), Expect = 0.0
Identities = 1910/2031 (94%), Gaps = 43/2031 (2%)
Strand=Plus/Plus
Query 1 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCtttttttGTCTTCAACTGTTGGAAACTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCTTTTTTTGTCTTCAACTGTTCGAAACTC 61
Query 61 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 121
Query 121 CTCATTTCCCGACCAAATTCATCGAACTGAGAACTCACTGTAATAAAACTaaaaaaaaaG 180
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
Sbjct 122 CTCATTTCCCGACCAAACTCATCGAACTAAGAACTCACTGTAATAAAACT-TTTAAAAGG 180
Query 181 -GTAAACACCAATGGCGGTTTATTACCCAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 239
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGTAAACACCAATGGCAGTTTATTACACAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 240
Query 240 TCTTTCTCAACCAT---CAAC--AA-CAACAAGCTTCTTCTTCCTCCGCCGCCGCTTCTT 293
|||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 241 TCTTTCTCAACCATCAACAACAAAACCAACAAGCTTCTTCTTCATCCGCCGCCGCTTCTT 300
Query 294 TCACCGTCACCGGCGGCGATAATGTTCGAAACGAGATGGTTTTTATCCCACCCACCACCA 353
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 301 TCACCGTCACCGGCGGCGATACTGTTCGAAACGAGATGGTTTTTATCCCACCAACCACCA 360
Query 354 CAGGAGACGTAGTAACAGGAAACGGTGCCGTTTCTAGCAGCGATCTAAGCTTTCACGATG 413
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 361 CAGGAGACGTTGTAACAGGAAACGGTACCGTTTCAAGCAGCGATCTAAGCTTTCACGATG 420
Query 414 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 480
Query 474 AATACCAATT-GGGTTT--TACTCAAAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 530
|||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 481 AATACCAATTGGGGTTTACTAGTCAGAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 540
Query 531 TTAATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATGTTGTTGGGTCAATCTGATC 590
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 TTCATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATCTTGTTGGGTCAATCTGATC 600
Query 591 CTTCCTCTGGTTATGCTGG-GA--GT-GG-A----TTCTACAACAATTATCGGTATAATG 641
||||||||||||||||||| | || || | |||||||||||||||||||||||||
Sbjct 601 CTTCCTCTGGTTATGCTGGTAATGGTGGGAATGGCTTCTACAACAATTATCGGTATAATG 660
Query 642 AGACATCAGGAGGGTTTATGAGCAGCGTTTTGCGGTCTCGGTATCTTAAACCGGCTCAGA 701
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 661 AGACATCAGGAGGGTTTATGAGCAGCGTTCTGCGTTCTCGGTATCTTAAACCTGCTCAGA 720
Query 702 ATTTGCTTGATGAAGTGGTTAATGTCAAGAAAGAACTTAACCAAATGGGGAAGAAGAAGA 761
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 721 ATTTGCTTGATGAAGTGGTTAGTGTCAAGAAAGAACTAAACCAAATGGGGAAGAAGAAGA 780
Query 762 TGAAAGTTAATGACTTTAACAATGGTTCTAAGGAGATAGAAGGAGGAGGTAGTGGCGAGT 821
||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||
Sbjct 781 TGAAAGTTAATGACTTTAACAGTGGTTCTAAGGAGATAGAAGGAGGA-G--GTGGTGAGT 837
Query 822 TATCGAATGATTCGAATGGCAAATCGATGGAGTTATCTACAGTTGAACGTGAGGAGCTTC 881
|||||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||
Sbjct 838 TATCGAGTGATTCGAATGGGAAATCGATTGAGTTATCTACAATTGAACGTGAAGAGCTTC 897
Query 882 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 957
Query 942 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1017
Query 1002 CTAAGGCGTACACATCAGTCGCTCTCAACAGAATCTCTCGCCATTTCCGTGCTCTTCGCG 1061
||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1018 CTAAGCCTTACACATCAGTTGCTCTCAACAGAATCTCTCGCCATTTTCGTGCTCTTCGCG 1077
Query 1062 ACGCAATAAAGGAACAAATTCAGATTATTAGAGAGAAACTTGGGGAGAAAGGAGGAGAGT 1121
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1078 ACGCAATAAAGGAACAAATTCAGATTGTTAGAGAAAAACTTGGGGAGAAAGGAGGAGAGT 1137
Query 1122 CGTTGGATGAGCAACAAGGAGAGAGAATACCAAGGCTT-AGGTATTTAGATCAACGGTTG 1180
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 1138 CGTTGGATGAGCAACAAGGAGAGAGGATACCAAGG-TTGAGGTATTTAGATCAACGGTTG 1196
Query 1181 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCCGCTTGGAGACCTCAA 1240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAA 1256
Query 1241 AGAGGTCTTCCTGAAAACTCTGTATCTGTTCTTCGCGCTTGGCTCTTCGAACATTTCCTT 1300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1257 AGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTT 1316
Query 1301 CATCCATACCCGAAAGAATCTGAGAAAATCATGCTTGCGAAA-CAGACAGGACTGTCAAA 1359
|||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct 1317 CATCCATATCCGAAAGAATCTGAGAAAATCATGCTTGC-AAAGCAGACAGGATTGTCAAA 1375
Query 1360 AAACCAGGTTGCTAATTGGTTCATTAATGCGAGAGTCCGTCTATGGAAACCGATGATCGA 1419
||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||
Sbjct 1376 GAACCAGGTTGCTAATTGGTTCATAAACGCGAGAGTTCGTCTGTGGAAACCGATGATCGA 1435
Query 1420 AGAGATGTATAAAGAAGAATTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1479
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGAAATGTATAAAGAAGAGTTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1495
Query 1480 AGAACCCAACAGCACAAACCAAGAAGACTCCTCGTCgcagcagcagcagcagcaAGAGAA 1539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1496 AGAACCCAACAGCACAAACCAAGAAGACTCCTCATCGCAGCAGCAGCAGCAGCAAGAGAA 1555
Query 1540 CAACAACAAC--C----TCACTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1593
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CAACAACAACAGCAACCTCGCTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1615
Query 1594 AGAAACTAAACCAGACCGTGTTCTAGGCAATGATAACGAGCCACAACAACCGCAAATAAA 1653
|||||| |||||||| ||||||||||||||||||||||| ||||| |||| || |||||
Sbjct 1616 AGAAACCAAACCAGATCGTGTTCTAGGCAATGATAACGACCCACAGCAACAACAGATAAA 1675
Query 1654 CAGGTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1713
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CCGCTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1735
Query 1714 TTACATAAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1773
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TTACATTAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1795
Query 1774 CTTTGTTGTTTGATTGATAGTATCTGGTTCTT---GGCACAGAGGACATGATTCTTGAAG 1830
||||||||| |||| || |||||||||||| || |||||||| |||||||||||||
Sbjct 1796 CTTTGTTGTGTGAT--AT--TATCTGGTTCTTCTTGGTACAGAGGAGATGATTCTTGAAG 1851
Query 1831 CGCAAGAAATGCGCTTCTGCAATTTTATAGTTTTAGGCATAATACACACATTGTCTGTGG 1890
||||||||||| |||| |||| ||||||||| ||||||||||||||| |||| ||| |||
Sbjct 1852 CGCAAGAAATGTGCTTTTGCATTTTTATAGTATTAGGCATAATACACCCATTCTCTATGG 1911
Query 1891 AATATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTACACTCGTAAGCCAAATATTGA 1950
| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1912 ATTATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTAGACTCTTAAGCCAAATATTGA 1971
Query 1951 TGTGTGTGTATAAGA-T-T-CACGGTGGTATAAAGGATACTTGCAAGTGTG 1998
| ||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 1972 TATGTGTGTATAATAATATTCACGGTGGTATAAAGGATACTTGCAAGTGTG 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5