BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472198
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19715.3 | Symbols: | Mannose-binding lectin superfamily pr... 2939 0.0
> AT1G19715.3 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:6816896-6819513 REVERSE LENGTH=1925
Length=1925
Score = 2939 bits (1591), Expect = 0.0
Identities = 1817/1924 (94%), Gaps = 24/1924 (1%)
Strand=Plus/Plus
Query 1 TGTGTTGCAGTAGTCAGCTCTCTGTGTACTCGAGCTTCTTACACTTGCTTTGAGTCTTTA 60
||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 TGTGTTGCAGTGGTCAGCTATCTGTTTACTCGAGCTTCTTACACTTGCTTTGAGTCTTTA 61
Query 61 GAGATCATCTTAATCTGAGGAT-G-----------------AGTGTTGAAGGCAAGCCTG 102
|||||||||||||||||||||| | |||||||||||||||||||
Sbjct 62 GAGATCATCTTAATCTGAGGATGGTATTAACATCATCTTATAGTGTTGAAGGCAAGCCTG 121
Query 103 CATCAGTCGGCCCATGGGGAGGCCA-ATGTGGTCATGCCTGGGATGATGGAATGTACACC 161
||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 122 CATCACTTGGCCCATGGGGAGGCCAGA-GTGGTCATGCCTGGGATGATGGAATGTACACC 180
Query 162 ACAGTAAAGCAAATAATTATAGCCCATGGTTCTGGAATAGACTCCATACAAGTTGAGTAC 221
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 ACAGTAAAGCAAATAATTATAGCCCATGGTTCTGGAATAGACTCCATACAAATTGAGTAT 240
Query 222 GACAAAAACGGTAGCTCTGTTTGGTCTGAAAAACGCGGAGGAAAGGGAGGCAAGAAGTTT 281
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GACAAAAACGGTAGCTCGGTTTGGTCTGAAAAACGTGGAGGAAAGGGAGGCAAGAAGTTT 300
Query 282 GATAAGGTCAAACTTGATTACCCACATGAGTATCTGATTTCAATCAATGGAACATACGGT 341
|||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 301 GATAAGGTCAAATTTGATTACCCACATGAGTATCTGATTTCAGTAAATGGAACCTACGGT 360
Query 342 AGCTTTGACGTCTGGGGAACTTTATGTGTCCGATCACTTACTTTTGAGAGTAACCGCAGA 401
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGCTTTGACGTCTGGGGAACTATATGTGTCCGATCACTTACTTTCGAGAGTAACCGCAGA 420
Query 402 AAATATGGACCATTTGGTGTTGAGTCAGGTACATTCTTCGCATTACCAAAATCAGGGTCA 461
||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 421 AAATATGGACCGTTTGGTGTTGATTCAGGTACATTCTTTGCATTGCCAAAATCAGGATCG 480
Query 462 AAGATTGTTGGGTTCCATGGGAAGGCTGGTTGGTATTTGGATGCTATTGGTGTTCACATT 521
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AAGATTATTGGGTTCCATGGGAAGGCTGGTTGGTATTTGGATGCTATTGGTGTTCACACT 540
Query 522 CAGCCAGTTCCTAAAGAGAATAATCCTTCGTCGAAAATCCTTTTGCATTCGCATCAAAGT 581
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CAACCAATTCCTAAAGAGAATAATCCTTCGTCGAAAATCCTTTTGCACTCGCATCAAAGT 600
Query 582 TTCCCTCAGGGTGATAAGAAACATGAGTACTCAGTGATACAAGGAAGTGTAGGGCAAAAC 641
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TTTTCTCAGGGTGATAAGAAACATGAGTACTCAGTGCTACAAGGAAGTGTAGGGCAAAAC 660
Query 642 TTTGATATAGTTGTTGCCCTCAGAAAGAAAGATCCAACTTTGCCTTCTTTTGAATCCCGG 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 TTTGATATAGTTGTTACCCTCAGAAAGAAAGATCCAACTTTGCCTTCTTTTGAGTCCCGA 720
Query 702 GATTCCGCAGGTGCCGAGATCACCAAACATAAGTTGGTGACAGATACTGAGAAGTCACAG 761
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATTCCGCAGGAGCCGAGGTCACCAAACATAAGTTGGTGACAGATACTGAGAAGTCACAG 780
Query 762 TCAAAAGTTGAAGGTGGCGCGAAAACATATGGACCATGGGGTGGAACCGGTGGTATCATG 821
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 781 TCAAAAATTGAAGGTGGCGCGAAAACATATGGACCATGGGGCGGAACCGGTGGAATCATG 840
Query 822 TTTGACGATGGGATTTATACCGGTA-TCAGACAAATCAATTTGTCACGTAGTGTCGGGAT 880
||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||
Sbjct 841 TTTGACGATGGGATTTATACCGGTATTC-GACAAATCAATTTGTCACGCAATGTCGGGAT 899
Query 881 TGTGTCGATAAAGGTCTGTTATGATTTTAGAGGACAAGCTGTGTGGGGAAGCAAACATGG 940
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTGTCGATGAAGGTCTGTTATGATTTTAGAGGACAAGCTGTGTGGGGAAGCAAACATGG 959
Query 941 TGGCATGGGAGGATTCAAACATGATAAGATTGTATTTGACTACCCATCAGAGGTTTTAAC 1000
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TGGCGTGGGAGGATTCAAACATGATAAGATTGTATTTGACTACCCTTCAGAGGTTTTAAC 1019
Query 1001 ACATGTAACGGGAACATATGGGCCGCTGATGTACATGGGACCTAATGTGATAAAGTCACT 1060
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 ACATGTAACGGGAACATATGGGCCGCTGATGTATATGGGACCTAATGTGATAAAGTCACT 1079
Query 1061 GACTTTCCGCACCAACAGAGGAAAACATGGACCTTATGGAGAAGAACAAGGTCCTTCTTT 1120
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1080 GACTTTCCGCACCAACAGAGGAAAGCATGGACCTTATGGAGAAGAACAAGGACCGTCTTT 1139
Query 1121 TACACATCAAATTGATGAGGGTAAAGTTGTTGGATTCCTTGGAAGAGAGGGTTTGTTTCT 1180
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TACACATCAAATGGACGAGGGTAAAGTTGTTGGATTCCTTGGAAGAGAGGGTTTATTTCT 1199
Query 1181 TGATTCCATTGGTGTTCATGTTATGGAATGCAAGATAAGTTCCCTTAAGCCAGCATCTCC 1240
||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1200 TGATTCCATAGGTGTTCATGTTATGGAATGCAAAATAAGTTCCCTTAAGCCATCATCTCC 1259
Query 1241 TAACAATTCAATTGTTCCTCATAATAACTCCGGCACTGCGCAAATCGAAAATTCCCCATG 1300
| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 TCACAATGCAATTGTTCCTCATAATAACTCCGGCACTGCGCAAATAGAAAATTCCCCATG 1319
Query 1301 GGCTAATAAGCTAGTCCTTGCAGCAAACGGCCATGGCGAAGAGGTTGATCGTGGAGTCGT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGCTAATAAGCTAGTCCTTGCAGCAAACGGCCATGGCGAAGAGGTTGATCGTGGAGTCGT 1379
Query 1361 CAAAGAACCAACACCGAGCGGTTCTGGACCGTGGGGAGGCGACGGAGGTCAAGCTTGGGA 1420
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1380 CAAAGAACCAACACCGAGCGGGCCTGGACCGTGGGGAGGTGACGGAGGTCAAGCTTGGGA 1439
Query 1421 TGATGGAGTATTTTCAGGGATCAAGCAGATATTTGTGACAAGAGGAAATGATGTTATCTC 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1440 CGATGGAGTATTTTCAGGGATCAAGCAGATATTTGTGACAAGAGGAAATGATGCTATCAC 1499
Query 1481 TTCAATACAAGTCGAGTACGATAGAAATGGACAATCTGTTTGGTCCACTAAACATGGTGG 1540
|||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1500 TTCAATACAAATTGAGTACGATAGGAATGGACAATCTGTTTGGTCCATTAAACATGGTGG 1559
Query 1541 TGATAACAATGGAGTCGCCACACACAGAATTAAACTTGAGTATCCAAACGAAACGATCAC 1600
||| | |||||||||||| ||||||||||||||| ||||||||||| | ||| |||||||
Sbjct 1560 TGACAGCAATGGAGTCGCTACACACAGAATTAAATTTGAGTATCCAGATGAATCGATCAC 1619
Query 1601 CTGCATTTCAGGGTATTACGGACCTCTGAACAATTCAGACAGATATAATGTTGTCAAGTC 1660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1620 CTGCATTTCAGGGTATTACGGACCTCTGAACAATTCAGACCGATATAATGTTGTCAAGTC 1679
Query 1661 TCTGAGTTTTTACACGAGCCGTGGGAAGTATGGTCCATACGGTGAAGAAACCGGGACGTT 1720
||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1680 TCTGAGTTTCTACACGAGCCGTGGGAGGTACGGGCCATACGGTGAAGAAACCGGGACGTT 1739
Query 1721 TTTCACTTCAACTACAACACAAGGAAAAGTTTTGGGGTTCCATGGAAGGAGTAGCTCGCA 1780
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1740 TTTCACTTCGACTACAACACAAGGAAAAGTTTTGGGGTTCCATGGAAGGAGTAGCTTTCA 1799
Query 1781 CTTGGACGCCATTGGAGTGCATATGCAGCATTGGCTTGGCAACAATAAGCCTTATTACAG 1840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1800 CTTGGACGCCATTGGAGTGCATATGCAGCATTGGCTTGGCAACAATAAGTCTTATTACAG 1859
Query 1841 CAGGGCTAGTTGTTTCAAGCTCTTCTCATAATCTTATCTGCGCACAACAAGAAAACATCT 1900
|||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||
Sbjct 1860 CAGGGCTAGTTGTTTCAAGCTCTTCTGATAATCTTCTCTGCGCA-A-CAAGAAAACATCT 1917
Query 1901 AACC 1904
||||
Sbjct 1918 AACC 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104417133600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5