BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472201
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 1648 0.0
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 1648 bits (892), Expect = 0.0
Identities = 1028/1091 (94%), Gaps = 19/1091 (2%)
Strand=Plus/Plus
Query 1 TAAAATCTTAAATCAATTTCGCCCTTCACTTGTGAAATCTCTCCTCCTTCACTCTCTCTA 60
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 15 TAAAATCTTAAATCAATTTCGCCGTTCACTTGTGAAACCTCTCCTCCTTCACTCTCTCTA 74
Query 61 ATGGCGCTTCCAAGCACAGTCTCATCTCCTTCCTTCAAATCAACTCCGCCGTATCTCTCC 120
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 75 ATGGCGCTTCCAAGCACTGTCTCATCTCCTTCCTTCAAATCAACTCCACCTTATCTCTCC 134
Query 121 GCCTTCAATCCTAAACCTCTACACCTCCCAGCTACTTACCGGAGCATCAACCGTCGAAGC 180
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 135 GCCTTCAACCCTAAACCTCTACATCTTCCAGCTACTTACCGGAGCATCAACCGTCGAAGC 194
Query 181 TGTAAACTCCTCTCCTTCCGATGCTCTTCCTCCTCCTTCTCCGAGAAGCA-C-C-ACAAC 237
|||||||||||||||||||| ||||| ||||| |||||||||||||| || | | |||||
Sbjct 195 TGTAAACTCCTCTCCTTCCGTTGCTCATCCTCTTCCTTCTCCGAGAAACACCACAACAAC 254
Query 238 GCGAATCCGCCGAAATCAGATGACCTAGTCGAGCTTCCTCTCTTCCCACTACCTCTCGTT 297
|||||||| || |||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 255 GCGAATCCACCCAAATCAGATGACTTAGTCGAGCTTCCTCTATTTCCACTACCTCTCGTT 314
Query 298 CTCTTCCCCGGCGCTACAATCCCGCTTCAGATCTTCGAGTTCCGTTACCGAGTCATGATG 357
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 315 CTCTTCCCAGGCGCAACAATCCCGCTTCAGATCTTCGAGTTTCGTTACCGAGTCATGATG 374
Query 358 CAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTAGTCTACTCCGACGCCGTTTCAGGC 417
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 375 CAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCTGTTTCAGGC 434
Query 418 TCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTCGACGAT 477
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 435 TCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTAGTCGACGAT 494
Query 478 CGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACGGATCTAGTCCGTACG 537
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 495 CGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACCGATCTCGTCCGTACG 554
Query 538 AAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAAGAGAAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAAGAGAAT 614
Query 598 CTGGACGAATTAGCGAATGAGGTTGAGGTTTTGATGAAAGAAGTGATTCGATTGTCGAAT 657
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 615 CTGGACGAATTGGCGAATGAAGTTGAGGTTCTGATGAAAGAAGTGATTCGATTGTCGAAT 674
Query 658 AGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATCAGTTCCCGACT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 675 AGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACT 734
Query 718 CCGTTTTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTG 777
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTA 794
Query 778 CTGGAGCTTGAAGACACGGCGGCTAGGTTAAAGAGAGAGAGGGAGACGCTGAGGAATACA 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CTGGAGCTTGAAGATACGGCGGCTAGGTTAAAGAGAGAGAGGGAGACGCTGAGGAATACA 854
Query 838 CTCAATTACTTGACCGCAGCTTCTGCAGTGAAAGATGTGTTCCCATCGCAGCCATAGTTA 897
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 855 CTCAATTATTTGACGGCAGCTTCTGCTGTGAAAGATGTGTTCCCATCGCAGCCATAGTTT 914
Query 898 AATCGGTATTTAGAAAATTTCTT--GGTCTCTC-TTTCAGCGTTTTCAGTTATT---GGA 951
|||||||||||||| | |||||| |||||| | |||| | ||||||||||||| |||
Sbjct 915 AATCGGTATTTAGATA-TTTCTTCTGGTCTC-CGTTTCGGTGTTTTCAGTTATTATTGGA 972
Query 952 TACATTATATTTGATCAATGTGTAAAGTTTCAGAAACTTAGGTAATAGATGGTGGAGATG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 973 TACATTATATTTGATCAATGTGTAAAGTTTCAGAAACTTAGGTAATAGATAGTGGAGATG 1032
Query 1012 T-TT-CATAGGATCGTTTATAGTTGGATTGATCAAGAAAAAGGTTTTTACTTGATTGCCT 1069
| || ||||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 1033 TGTTTCATAGGATCGTTT---G--G-ATTGATCAAGAAATGGGTTTTTACTTGATTGCCT 1086
Query 1070 CTGTGATAAAA 1080
|| ||||||||
Sbjct 1087 CTATGATAAAA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5