BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472205
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19790.1 | Symbols: SRS7 | SHI-related sequence 7 | chr1:683... 2388 0.0
> AT1G19790.1 | Symbols: SRS7 | SHI-related sequence 7 | chr1:6838120-6840293
REVERSE LENGTH=1680
Length=1680
Score = 2388 bits (1293), Expect = 0.0
Identities = 1582/1711 (92%), Gaps = 61/1711 (4%)
Strand=Plus/Plus
Query 1 AACTGTAGAGAAAGTGCCCCATAGAAGAAGATCTTCATAGTACTATCCAtctcttta--- 57
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AACTGTAGAGAAAGTGCCCCATAGAAGAAGATCTTCATAGTACTCTCCATCTCTTTACTC 60
Query 58 --c-tctc---ct-tctctctatccctctatatctctctctctctctctctcACCCACAT 110
| |||| || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 TCCTTCTCTTTCTCTCTCTCTATCTCTCTATTTCTCTCTCTCTCTCTCTCTCACCCACAG 120
Query 111 AGAAAACCAGCAGTAGTAGCAGTAAATTGCTTGAGTTCTTGATGACAGA--GACAATATC 168
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 121 AGAAAACCAGCAGTAGTAGCAGTAAATTGCTTGAGTTCTTGATGACAGATCGACAATGTC 180
Query 169 TTAAATGATgaagagaagagaagagaagagGAGCAATAAACCTTGGCGGCGTTTGCAGCA 228
||||||||||||||||| ||||| | | | |||||||||||||||||||||||||||||
Sbjct 181 TTAAATGATGAAGAGAAAAGAAG-G-A-A--AGCAATAAACCTTGGCGGCGTTTGCAGCA 235
Query 229 GTTTCTTAAATTTCCCCACCATCATTACTCTCTCATCTGCTCCCAAATCTGCTCCTTCTA 288
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 236 GTTTCTTAAATTTCCTCACCATCATTACTCTCTCATCTGCTCCCAAATCTGCTCCTTTTA 295
Query 289 AATACCAAACACATCTCCAAGTCTAGCTAGAAATTAATGAGCTAGAGAGTAAAACAGAAA 348
||||||||||||||||||||| ||||||||||||||||| | ||||||| ||| |||||
Sbjct 296 AATACCAAACACATCTCCAAGCCTAGCTAGAAATTAATGTGATAGAGAG-CAAA-AGAAA 353
Query 349 GAGaaaaaaaTGGCTGGATTGTTCTATCTTGGAGGGAGAGATCACAACAAACAAGATCAT 408
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 AAGAAAAAAATGGCTGGATTGTTCTATCTAGGAGGGAGAGATCACAACAAACAAGATCAT 413
Query 409 CATCAAGACAAGGATCATAATGAAGACAAGAGCAACAATTATCTCTATCTATACAAAGAC 468
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CATCAAGAAAAGGATCATAATGAAGACAAGAGCAACAATTATCTCTATCTATACAAAGAC 473
Query 469 GAGATCTacaacaacaacaagggttttgagattttcccacctcaatattttcaacaacaa 528
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 474 GAGATCTACAACAACAACAAGGGTTTTGAGATTTTCCCTCCTCAATATTTTCAACAACAA 533
Query 529 caacaacaaAATCATGTGGCTGCTCCAACAAATCTCTACTCTTTTGGTATGGTCCCGAGT 588
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAGCAACAAAATCATGCGGCTGCTCCAACAAATCTCTACTCTTTTGGTATGGTCCCGAGT 593
Query 589 GGTGGTATTAACATTAACAATAACCGGAGTACTAATCGGAGTTTGTACTTCAACGTCGTC 648
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGTGG---TAACATAAACAATAACCGGAGTACTAATCGGAGTTTGTACTTCAACGTCGTC 650
Query 649 TCCGATCATGAGCCGGTGAGATCCTCAACGGGAGGGTTTACGGTAACTAGGCAAGGAAAC 708
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 651 TCCGATCATGAGCCGGTGAGATCCTCAACGGGAGGGTTTACGGTAACGAGACAAGGGAAC 710
Query 709 ATGAATTGCCAAGACTGTGGGAATCAAGCCAAGAAAGATTGTCCTCATATGAGATGTCGT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATGAATTGCCAAGACTGTGGGAATCAAGCCAAGAAAGATTGTCCTCATATGAGATGTCGT 770
Query 769 ACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACACACGTGAAGAGCACGTGGGTCTCG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACACACGTGAAGAGCACGTGGGTCTCG 830
Query 829 GCTGCTAAACGCCGTGAGAGACAGGCTCAGTTAGCTGTTTTGCCAGCTAAGCGGATAAGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 GCTGCTAAACGCCGTGAGAGACAGGCTCAGTTAGCTGTTTTGCCAGCTAAGCGTATAAGA 890
Query 889 GACGCTAACTCAAGCGGTGGTGGCGATGACGATGATGA---CAGAGAGGACGAGAGAAAT 945
|||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 891 GACGCTAACTCAAGGGGTGGTGGGGATGACGATGATGATGACAAAGAGGACGAGAAAAAT 950
Query 946 GGCGGTGGAGACGACAGTTGTGGGGGTGGCTCGGCTCTTGCTTGCACCCGTGTGGTTAAT 1005
| | | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 951 G-------A--C-A--GTTGTGGTGGTGGCTCGGCTCTTGCTTGCACCCGTGTGGTTAAT 998
Query 1006 GTTAATTCTTCAGGGTTAGAGAGTAGTCACTTACCGCCGGAGATAAGTTCGCCGGCGGTT 1065
| || ||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||
Sbjct 999 GCTAGTTCTTCAGGGTTAGAGACTAGTCACTTACCACCGGAGATAAGTTCCCCGGCTGTT 1058
Query 1066 TTCCGGTGTATGAGAGTCAGCTCAATCGACGATGAAGAAGAAGAGTATGCTTATCAAACG 1125
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1059 TTCCGGTGTATGAGAGTCAGCTCAATCGACGATGAAGACGAAGAGTATGCTTATCAAACG 1118
Query 1126 GCTGTGAGCATTGGAGGACACGTGTTCAAAGGCATTCTCTACGACCAAGGTCCATC---A 1182
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1119 GCTGTTAGCATTGGAGGACACGTGTTCAAAGGCATTCTCTACGACCAAGGTCCATCGTCA 1178
Query 1183 GATCACCACCGATACAGCTCAAGCGTCAACGCCGAAACCTCTCA--A-CACCATCTTAAC 1239
||||||||||| |||||||||||| |||| | |||||||||||| | ||||||||||||
Sbjct 1179 GATCACCACCGTTACAGCTCAAGCCTCAATGGCGAAACCTCTCATCAACACCATCTTAAC 1238
Query 1240 CTCATGGATTCAACCGCCT-CAGCCGTTACTACAACCGCCGTGACCGCCGTTAATAGTAA 1298
|||||||| ||||| ||| |||||| ||||||| |||||||||||||||||| | |||
Sbjct 1239 CTCATGGACTCAACT-CCTTCAGCCGCAACTACAAACGCCGTGACCGCCGTTAACACTAA 1297
Query 1299 CAACGGATCGATTGACCCTTCTTCAATTTACACTGCGGTGGCGGCTCCGTTTAACGCCTA 1358
||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 1298 CAACGGATCTATTGACCCTTCTTCCCTTTACACTGCGGTGGCAACTCCGTTCAACGCCTT 1357
Query 1359 TGTCACCGCCGGTAC-CTCTTTCTTTGCACCTCCTAGGTCTTGATATTTTAAACATTTGA 1417
|||| ||| ||||| | ||||||||||| || |||||| |||| ||| |||||| |||
Sbjct 1358 TGTCGCCGGTGGTACGC-CTTTCTTTGCATCTTCTAGGTGTTGAGATTA-AAACATCTGA 1415
Query 1418 AGATGTTAAAATCTTTAAAATTACGTTTGTGATTAATTATAACTACTCTTATAACTACCA 1477
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AGATGTTAAA-TCTTTTAAATTACGTTTGTGATTAATTATAACTACTCTTATAACTACCA 1474
Query 1478 GAGATCGATCTACCGTCTACGAGTACGAGAGATTATTTATTTGAGTATTTTTATTGTTGT 1537
|||||| | | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1475 GAGATC--T--A---TCTACGAGTACGAGAGATAATTTATTTGAGTATTTTTATTGTTGT 1527
Query 1538 CGGACAATATGGTGACTGTTCTGTTCGTACCTAGCTAGGGTTTGTGTACTGATTAACATG 1597
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1528 CGGACAATATGGTGACTGTTC-GT----ACCTAGCTAGGGTTTGTGTACTGATTAACATG 1582
Query 1598 CACATCGTACGTTTTAGAGATAAATGAGATATTATGACTAAGttttttttGGGGATAAAC 1657
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1583 CACATCGTACGTTTTAGAGATAAATGAGATATTATCATTAAGTTTTTTTTGGGGATAAAC 1642
Query 1658 GAGCTATTAAATTAATGTCAGAGTTTCAAAT 1688
||| |||||||||||||||||||||||||||
Sbjct 1643 GAGATATTAAATTAATGTCAGAGTTTCAAAT 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5