BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472206
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19800.2 | Symbols: TGD1 | trigalactosyldiacylglycerol 1 | c... 1884 0.0
> AT1G19800.2 | Symbols: TGD1 | trigalactosyldiacylglycerol 1 |
chr1:6846374-6848096 FORWARD LENGTH=1462
Length=1462
Score = 1884 bits (1020), Expect = 0.0
Identities = 1147/1208 (95%), Gaps = 10/1208 (1%)
Strand=Plus/Plus
Query 116 CCACAATGATGCAGACTTGTTGTATCCATCAATCGTTTTGTTTCCCTCATAGAGTCCTTC 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 263 CCACAATGATGCAGACTTGTTGTATCCATCAATCGTTTTGTTTCCCTCATAGAGTCTTTC 322
Query 176 CAAGATTTGATGCTTCGATTGGTATTAAGCCCCCAAAGCTTTGTCAAGTTGGTTTCACTG 235
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 323 CACGGTTTGATGCTTCGATTGGTATTAAGCCCCCAAAGCTTTGTCAAGTTGGTTTCATTG 382
Query 236 GAAAGACTCAGTCTTATGGGATTTCAAATCTTATACGGGGAAGAAGATTATATGTCAACT 295
|||||||||| |||||||||||||||| || |||||| ||||||||||||||| || |
Sbjct 383 GAAAGACTCAATCTTATGGGATTTCAAGTCCGATACGGCAAAGAAGATTATATGTGAATT 442
Query 296 TGAATGCTAATGACGGTCACCCGTCCATGTCTATGTTGGCAGAAGAAACCTCTACTGAAA 355
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 443 TGAATGCTAATGATGGTCACCCATCCATGTCTATGTTGGAAGAAGAAACCTCTACTGAAA 502
Query 356 TCAGCGAACCGAGTCAAGAAGCCGAGCTTCCGTTCAGCAAATGGTCACCTTCTAAGTACA 415
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 ACAACGCACCCAGTCAAGAAGCCGAGCTTCCGTTCAGCAAATGGTCACCTTCTAAGTACA 562
Query 416 TTTGGAGAGGTTTATCAGTTCCGATTATAGCAGGACAAGTCGTTCTCCGGATTTTAAAGG 475
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 563 TATGGAGAGGTTTATCAGTTCCTATTATAGCAGGACAAGTCGTTCTCCGGATTTTAAAGG 622
Query 476 GTAAGATCCACTGGAGAAACACTCTTCAACAGCTGGAGAGAACCGGACCGAAATCTCTTG 535
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 623 GTAAGATTCACTGGAGAAACACTCTTCAACAGCTGGAGAGAACCGGACCGAAATCTCTAG 682
Query 536 GAGTTTGTCTTCTGACTTCTACATTTGTTGGTATGGCTTTCACAATCCAGTTCGTTAGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GAGTTTGTCTTCTGACTTCTACATTTGTTGGTATGGCTTTCACAATCCAGTTCGTTAGAG 742
Query 596 AATTCACTAGACTAGGTCTTAACAGATCCATAGGAGGCGTCTTGGCTTTAGCCTTCTCTA 655
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 743 AATTCACTAGACTAGGTCTAAACAGATCCATTGGAGGTGTCTTGGCTTTAGCCTTCTCTA 802
Query 656 GAGAGCTTAGTCCAGTTATCACGTCGATTGTTGTTGCTGGACGAATGGGAAGCGCATTTG 715
||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 803 GAGAGCTAAGTCCAGTCATCACATCGATTGTTGTTGCTGGACGAATGGGAAGTGCATTTG 862
Query 716 CAGCTGAACTAGGGACAATGCAAGTCTCAGAGCAAACTGATACACTCCGTGTTTTAGGAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CAGCTGAACTAGGGACAATGCAAGTCTCAGAGCAAACTGATACACTCCGTGTTTTAGGAG 922
Query 776 CAGATCCGATTGATTATCTAATCACACCAAGAGTCATCGCCTCGTGTCTGGCAT-TACCG 834
| || || ||||||||||||||||| ||||||||||||||||||||| |||| | |||||
Sbjct 923 CTGACCCAATTGATTATCTAATCACTCCAAGAGTCATCGCCTCGTGTTTGGC-TCTACCG 981
Query 835 TTTCTGACACTCATGTGTTTCACTGTTGGTATGGCTTCAAGCGCTCTGCTCTCTGATGCA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 TTTCTGACACTCATGTGTTTCACTGTTGGTATGGCTTCAAGCGCTCTGCTCTCTGATGCA 1041
Query 895 GTTTACGGGATCAGCATTAACATTATCATGGACTCGGCTCACCGAGCACTTAGACCATGG 954
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1042 GTTTACGGGATCAGCATTAACATAATCATGGACTCGGCTCACCGAGCACTTAGACCATGG 1101
Query 955 GACATTGTGAGTGCCATGATTAAATCTCAAGTCTTTGGAGCTATAATATCGGTAATTAGT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GACATTGTGAGTGCCATGATTAAATCTCAAGTCTTTGGAGCTATAATATCGGTAATTAGT 1161
Query 1015 TGTTCTTGGGGAGTAACCACTACTGGAGGTGCTAAAGGTGTTGGAGAATCTACAACTTCT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TGTTCTTGGGGAGTAACCACTACTGGAGGTGCTAAAGGTGTTGGAGAATCTACAACTTCT 1221
Query 1075 GCAGTTGTCATGTCTCTTGTCGGAATCTTTATCGCGGATTTTGTGCTTTCTTCCTTCTTC 1134
|| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1222 GCTGTCGTCATGTCTCTTGTCGGAATCTTCATCGCGGACTTTGTGCTTTCTTCCTTCTTC 1281
Query 1135 TTTCAGGGTGCTGGAGATTCTTTGAAGAACTGTGTTTGACATATTATTATTTTTTGTCTT 1194
||||| |||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1282 TTTCAAGGTGCTGGAGATTCTTTGAAGAACTGTGTTTGACATATTATT-TTCT--GTCTT 1338
Query 1195 CTTATGTTGTGGTTTAGATGGGTTTATGTAAATCAGTTGTCTTAAATTTTTTAAAAAAGG 1254
||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1339 CTTTTGTTGTGGTTTAGATGGGTTTATGTAAATCAGTTGTCTTAAATTG---AGAAA-GT 1394
Query 1255 AACATCATTTTGGAAAGAACATAAAGATTGCTATATTTCTATTCCGATA-TGATACACGT 1313
||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||| |
Sbjct 1395 AACATCATTTTAGAAAGAACAGAAAGATTGCTATATTTCTATTCCAATAATGATACACAT 1454
Query 1314 TTAATAAT 1321
| ||||||
Sbjct 1455 TGAATAAT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5