BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472207 Length=688 Score E Sequences producing significant alignments: (Bits) Value AT1G19830.1 | Symbols: | SAUR-like auxin-responsive protein fa... 774 0.0 > AT1G19830.1 | Symbols: | SAUR-like auxin-responsive protein family | chr1:6852155-6852872 FORWARD LENGTH=718 Length=718 Score = 774 bits (419), Expect = 0.0 Identities = 521/566 (92%), Gaps = 23/566 (4%) Strand=Plus/Plus Query 3 TCTCCTCACTCCTATAGCAAACCACAACAAAAACATAAAAGATAACAAAGAAAACCCCAT 62 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 5 TCTCCTCACTCCTCTAGCAAACCACAACAAAAACATAGAAGATAACAAAGAAAACCCCAT 64 Query 63 TTCACTCTCAAAGGAATGGCGATTATAAACCGGAGCAAGCTGACCCAAACGACTATGATA 122 || | | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 65 TT--C-C-CAAGGGAATGGCGATTATAAACCGGAGCAAGCTGACACAAACGACTATGATA 120 Query 123 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAC 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAT 180 Query 183 GA-ACATGAACATGCTGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 241 | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 -ACACATGAACATGATGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 239 Query 242 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 299 Query 302 GTTTCAGCTTCTTTTACAACAAGCTGAGGAAGAGTTTGGCTTCGAGCACAACATGGGTCT 361 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 300 GTTTCAGCTTCTTCTACAACAAGCTGAGGAAGAGTTTGGCTTCGATCACAACATGGGTCT 359 Query 362 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAATCCA- 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 360 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAG-CCAA 418 Query 421 CATATATTTAATTAGGGTTTTTATTTTTAATTAAGCATAAAGATCTGTTTTTAATTAGCT 480 |||||||||| | | |||| ||| || | | ||||||||||||||| | |||| Sbjct 419 CATATATTTAGT--G--TTTT-ATTCTTGAG---G-ATAAAGATCTGTTTT-AGGTAGCC 468 Query 481 TTCTAAAAATTTT-GGTGATTTTGGGGTACAATAGGG-TAAATGTTTCTAATTAGAACGA 538 || ||||| |||| ||||||||||||||||||| ||| ||| |||||||| ||||||||| Sbjct 469 TT-TAAAA-TTTTAGGTGATTTTGGGGTACAATGGGGGTAAGTGTTTCTA-TTAGAACGA 525 Query 539 GACCAACTTTAGAGATACCTCCAAGA 564 ||| |||| ||||||| |||| |||| Sbjct 526 GACTAACTCTAGAGATGCCTCTAAGA 551 Score = 207 bits (112), Expect = 8e-53 Identities = 122/127 (96%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 562 AGATTTGTAGGGGGGAAAATAAGCAGATACTCTGATAATTTTTCTCGTTGTGGTAGTGTG 621 |||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 590 AGATTTGTAGGGAGGAAAATAAGCAAATACTCTGATAATTTTTCTCGTTGTGGTGGTGTG 649 Query 622 ATTATCTGTACAACCCAGTGATGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 681 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 650 ATTATCTGTACAACCCATTGAGGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 709 Query 682 TTCTTAT 688 ||||||| Sbjct 710 TTCTTAT 716 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33305239461 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5