BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472207
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19830.1 | Symbols: | SAUR-like auxin-responsive protein fa... 774 0.0
> AT1G19830.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:6852155-6852872 FORWARD LENGTH=718
Length=718
Score = 774 bits (419), Expect = 0.0
Identities = 521/566 (92%), Gaps = 23/566 (4%)
Strand=Plus/Plus
Query 3 TCTCCTCACTCCTATAGCAAACCACAACAAAAACATAAAAGATAACAAAGAAAACCCCAT 62
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 5 TCTCCTCACTCCTCTAGCAAACCACAACAAAAACATAGAAGATAACAAAGAAAACCCCAT 64
Query 63 TTCACTCTCAAAGGAATGGCGATTATAAACCGGAGCAAGCTGACCCAAACGACTATGATA 122
|| | | ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 65 TT--C-C-CAAGGGAATGGCGATTATAAACCGGAGCAAGCTGACACAAACGACTATGATA 120
Query 123 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAC 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAT 180
Query 183 GA-ACATGAACATGCTGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 241
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 -ACACATGAACATGATGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 239
Query 242 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 299
Query 302 GTTTCAGCTTCTTTTACAACAAGCTGAGGAAGAGTTTGGCTTCGAGCACAACATGGGTCT 361
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 GTTTCAGCTTCTTCTACAACAAGCTGAGGAAGAGTTTGGCTTCGATCACAACATGGGTCT 359
Query 362 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAATCCA- 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAG-CCAA 418
Query 421 CATATATTTAATTAGGGTTTTTATTTTTAATTAAGCATAAAGATCTGTTTTTAATTAGCT 480
|||||||||| | | |||| ||| || | | ||||||||||||||| | ||||
Sbjct 419 CATATATTTAGT--G--TTTT-ATTCTTGAG---G-ATAAAGATCTGTTTT-AGGTAGCC 468
Query 481 TTCTAAAAATTTT-GGTGATTTTGGGGTACAATAGGG-TAAATGTTTCTAATTAGAACGA 538
|| ||||| |||| ||||||||||||||||||| ||| ||| |||||||| |||||||||
Sbjct 469 TT-TAAAA-TTTTAGGTGATTTTGGGGTACAATGGGGGTAAGTGTTTCTA-TTAGAACGA 525
Query 539 GACCAACTTTAGAGATACCTCCAAGA 564
||| |||| ||||||| |||| ||||
Sbjct 526 GACTAACTCTAGAGATGCCTCTAAGA 551
Score = 207 bits (112), Expect = 8e-53
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 562 AGATTTGTAGGGGGGAAAATAAGCAGATACTCTGATAATTTTTCTCGTTGTGGTAGTGTG 621
|||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 590 AGATTTGTAGGGAGGAAAATAAGCAAATACTCTGATAATTTTTCTCGTTGTGGTGGTGTG 649
Query 622 ATTATCTGTACAACCCAGTGATGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 681
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATTATCTGTACAACCCATTGAGGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 709
Query 682 TTCTTAT 688
|||||||
Sbjct 710 TTCTTAT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5