BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472214
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific hist... 719 0.0
AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28... 335 3e-91
AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:45... 302 3e-81
> AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific histone
H3 | chr1:6905034-6906018 FORWARD LENGTH=640
Length=640
Score = 719 bits (389), Expect = 0.0
Identities = 547/616 (89%), Gaps = 40/616 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATCTACTGGTGGAAAAGGTCCAAGGAAAGAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATCTACTGGTGGAAAAGGTCCAAGGAAGGAA 60
Query 61 CTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGAGG 120
|||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||
Sbjct 61 CTCGCTACCAAGGCGGCGAGGAAAAC---TAGACGACCGTACCGTGGTGGAGTCAAGAGG 117
Query 121 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGT 177
Query 181 ACCGACTTGCTAATCCGTAAATTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCAAGAT 240
||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 178 ACCGACTTGTTGATCCGCAAATTGCCTTTCCAACGACTTGTTCGTGAAATCGCCCAAGAT 237
Query 241 CATAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAGCCGAA 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 TTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCGAA 297
Query 301 GCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAAAGGGTT 360
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 298 GCATACTTGGTGGGGTTGTTCGAAGACACGAATTTGTGTGCGATTCACGCCAAAAGGGTT 357
Query 361 ACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCTTGAATC 420
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 ACGATCATGTCCAAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTTGAATC 417
Query 421 ATCTTGATGATTATGTGAATTTGT-TTTC--GT-TTT---GT-TCT-C-T---GT----- 462
||| ||||| || ||||||||||| ||| || ||| || | | | | ||
Sbjct 418 ATCATGATGGTTCTGTGAATTTGTATTTTATGTATTTTTAGTGTTTTCGTTTTGTTCTTT 477
Query 463 G--GGGTGAGATAGAATCATGTATATAGGTTTCTGATTCGTACTCTGATAAAACCCGTTG 520
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 478 GATGGGTGAGATAGAATCGTGTATATAGGTTTCTGATTCCTACTCTGATAAAACCC-TTC 536
Query 521 -GTGTGTATCTTTTCTTTCTTTG-T------------CT-TT-GTGTCTTGTTTGTAAAA 564
|||||| | ||||||||||||| | || || |||||||||||||||||
Sbjct 537 CGTGTGTTTATTTTCTTTCTTTGGTATTTATTAGGATCTCTTTGTGTCTTGTTTGTAAAA 596
Query 565 TAATCTGTTTCGTGAA 580
||||||||||||||||
Sbjct 597 TAATCTGTTTCGTGAA 612
> AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28390665-28391493
FORWARD LENGTH=531
Length=531
Score = 335 bits (181), Expect = 3e-91
Identities = 340/417 (82%), Gaps = 10/417 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATCTAC-TGGTGGAAAAGGTCCAAGGAAAGA 59
||||||||||||||||||||||| || ||||| || || ||||||| ||| ||||
Sbjct 89 ATGGCTCGTACGAAGCAAACTGCAAGAAAATC-ACACGGAGGAAAAGCTCCGAGGACTCT 147
Query 60 ACTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGAG 119
|||||||||||||||||||||||| ||| | || | || | || || |||||||
Sbjct 148 GCTCGCTACCAAGGCGGCGAGGAAATCTG--CGCCGA-C-TA-C-TGGAGGAGTCAAGAA 201
Query 120 GGCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAG 179
||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 202 ACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAG 261
Query 180 TACCGACTTGCTAATCCGTAAA-TTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCAAG 238
|| || ||| | ||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 262 CACAGAGTTGTTGATCCGTAAACTT-CCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAG 320
Query 239 ATCATAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAGCCG 298
|| | ||| |||| | || ||||| ||||||||||| | || |||||||| || || |
Sbjct 321 ATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTG 380
Query 299 AAGCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAAAGGG 358
||||||| ||||| |||||||| ||||| || ||||||||||| || || ||||| ||||
Sbjct 381 AAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGG 440
Query 359 TTACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCTT 415
||||||||||||| | || |||| ||||| ||| | || ||||| || |||||||
Sbjct 441 TTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 497
> AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:4587780-4588613
REVERSE LENGTH=648
Length=648
Score = 302 bits (163), Expect = 3e-81
Identities = 341/425 (80%), Gaps = 19/425 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATCTAC-TGGTGGAAAAGGTCCAAGGAAAG- 58
|||||||||||||||||| | ||||| ||||| || || ||||||| ||| | | |||
Sbjct 92 ATGGCTCGTACGAAGCAATCCGCGAGAAAATC-ACACGGAGGAAAAGCTCCGACG-AAGC 149
Query 59 AACTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGA 118
| ||||||||||||||||| |||||| ||| | || | || | ||| || |||||||
Sbjct 150 AGCTCGCTACCAAGGCGGCAAGGAAATCTG-CA-CCGA-C-TA-C-CGGAGGAGTCAAGA 203
Query 119 GGGCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGA 178
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 204 AACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAAAAGA 263
Query 179 GTACCGACTTGCT-AATCCGTAAA-TTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCA 236
| || || ||| | || ||||||| || || |||||||||||||||||||||||||||||
Sbjct 264 GCACAGAGTTGTTGAA-CCGTAAACTT-CCATTCCAACGTCTTGTTCGTGAAATCGCTCA 321
Query 237 AGATCAT-AAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAG 295
|||| | ||| |||| | || |||||||||||||| || | || |||||||| || |
Sbjct 322 AGATT-TCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGTTAGCTCTTCAAGAAGCTG 380
Query 296 CCGAAGCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAA- 354
| || ||||| ||||| |||||||| |||||||| ||||| ||||| || || || |||
Sbjct 381 CGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCTGTGCCATTCATGC-AAAG 439
Query 355 AGGGTTACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCT 414
|||||||| || ||||| | || |||| ||||| ||| | || |||| || ||||||
Sbjct 440 AGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGCAGAGCGTGCT 499
Query 415 T-GAA 418
| |||
Sbjct 500 TAGAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5