BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472215
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19900.1 | Symbols: | glyoxal oxidase-related protein | chr... 2584 0.0
> AT1G19900.1 | Symbols: | glyoxal oxidase-related protein | chr1:6906899-6908741
REVERSE LENGTH=1843
Length=1843
Score = 2584 bits (1399), Expect = 0.0
Identities = 1660/1785 (93%), Gaps = 22/1785 (1%)
Strand=Plus/Plus
Query 17 CaaaaaaaTGGCAGCACGAGCCACATTCATATTCTATGCTCTCTTCCTAACCTCAATCCA 76
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 51 CAAAAAAATGGCAGCACGAGCAACATTCATATTCTATGCTCTCTTCCTAACCACACTCCA 110
Query 77 ACTCCTCCTAACATACCACGTGTCATCCGCCGCCCGAGGATTATGGAAATACATCGCCCC 136
| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 111 ATTCCTTCTAACACACCATGTGTCATCCGCCGCCCGAGGATTATGGAAATACATCGCCCC 170
Query 137 CAACGTCGGAATCTCGGCGATGCATATGCAACTTCTCCATAACGACCGTGTCGTAATGTA 196
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CAACGTCGGAATCTCCGCGATGCATATGCAACTTCTCCATAACGACCGTGTCGTAATGTA 230
Query 197 CGACCGAACCAACTTCGGACCATCGAACATCTCTCTACCTAACGGAAACTGCCGTGACAA 256
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 231 CGACCGAACCAACTTCGGACCATCAAACATCTCTCTACCTAACGGTAACTGCCGTGACAA 290
Query 257 -TCCAAACGACATCGTTTCCAAGCGCGACTGCACAGCTCACTCGATCGAATACGACGTCG 315
|| || ||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 CCCCCAA-GACGCCGTCTCCAAAATCGACTGCACAGCTCACTCGATCGAATACGACGTCG 349
Query 316 CAATGAACACCGTCAGGCCCCTAACGGTACAATCCAACACATGGTGCTCATCCGGTTCGG 375
||| ||||||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct 350 CAACGAACACCATCCGACCTTTAACGGTACAATCCAACACATGGTGCTCATCCGGTTCGG 409
Query 376 TTAGACCGGACGGTGTTCTTGTCCAAACCGGTGGAGACCGAGATGGGGAACTAAAGGCGA 435
|| |||||||||||||||||||||||||||||||||||||||| || ||||| ||| | |
Sbjct 410 TTCGACCGGACGGTGTTCTTGTCCAAACCGGTGGAGACCGAGACGGAGAACTTAAGACAA 469
Query 436 GAACATTCTCTCCTTGTGACAACAATCAATGTGATTGGGTAGAAATTAACAACGGCTTAA 495
|||| || ||||||||| | |||||||||||||||||||| ||||| |||||||| ||||
Sbjct 470 GAACCTTTTCTCCTTGTAATAACAATCAATGTGATTGGGTCGAAATGAACAACGGTTTAA 529
Query 496 CGAAGAGAAGATGGTATGCTTCCAACCATATTCTTCCCGACGGTAAACAAATCGTCATCG 555
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 530 AAAAGAGAAGATGGTACGCTTCCAACCATATTCTTCCCGACGGTAAACAAATCGTCATGG 589
Query 556 GAGGTCAAGCTCAATTCAATTACGAGTTCTTCCCCAAAACGACAAACCCTAACGTAGTCG 615
||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 590 GAGGTCAAGGACAATTCAACTACGAGTTCTTTCCCAAAACGACAAACCCTAACGTAGTCG 649
Query 616 CGTTACCGTTTTTGGCCGAGACTCATGATCAAGGACAAGAGAATAATCTTTATCCTTTTG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGTTACCGTTTTTGGCCGAGACTCATGATCAAGGACAAGAGAATAATCTTTATCCTTTTG 709
Query 676 TTTTTATGAATACCGATGGGAATTTATTTATATTCGCTAATAACAAAGCGATATTACTCG 735
| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 710 TGTTTATGAATACCGATGGGAATCTATTTATGTTCGCTAATAACAGAGCGATATTACTCG 769
Query 736 ACTATGTTAAGAACACGGTGGTGAAAACTTTTCCGGCGATTCCCGGTGGTGATCCGAGAA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ACTATGTTAAGAACACGGTGGTGAAAACTTTTCCGGCGATTCCCGGTGGTGATCCGAGAA 829
Query 796 ACTATCCGAGCACTGGCTCGGCCGTGTTATTACCGTTAAAGAATCTTGAAGCGGATCAAA 855
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 830 ACTATCCGAGCACTGGCTCAGCCGTGTTATTACCGTTAAAGAATCTTGAAGCGGAT-AAT 888
Query 856 -TCGAGACGGAGGTTCTGGTGTGTGGAGGTGCACCGAAAGGATCATACAACCTAGCTTTT 914
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 889 GTCGAGACGGAGGTTCTAGTGTGTGGAGGTGCACCAAAAGGATCATACAACCTCGCT--- 945
Query 915 AGAAAGAAAACTTTCGTTGAA-GCGCTTGACACGTGTGCAAGGATCAAGATTAACGATGC 973
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 946 AGAAAGAAAACTTTCGT-GAAAGCGCTTGACACGTGTGCAAGGATCAAGATTAACGATGC 1004
Query 974 GAATCCTCAATGGACGGTGGAGAATATGCCACATGCTAGAGTTATGGGAGATATGATTCT 1033
|| ||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1005 CAAACCTGAATGGGCGGTTGAGAAGATGCCACATGCTAGAGTTATGGGAGATATGATTCC 1064
Query 1034 TTTGCCAAACGGAGATGTTTTGATTATCAACGGTGGATCTTTTGGTACTGCTGCATGGGA 1093
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1065 TTTGCCAAACGGAGATGTTTTGCTAATCAACGGTGGATCTTTTGGTACTGCTGCATGGGA 1124
Query 1094 GCTTGGTCGTGA-ACCGGTTTTGGCACCGGACCTATACCATCCTGAGAATCCGGTTAACT 1152
|||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||| ||
Sbjct 1125 GCTTGGTCGT-ACACCGGTTTTAGCACCAGACCTATACCATCCCGAGAATCCGGTTGGCT 1183
Query 1153 CAAGGTTTGAATCGCTAAGGCCGACTACAATCCCGAGAATGTATCACTCCGCGGCTATTC 1212
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CTAGGTTTGAATCGCTAAGGCCGACTACAATCCCGAGAATGTATCACTCCGCGGCTATTC 1243
Query 1213 TTCTACGTGACGGTAGGGTTCTAGTCGGAGGAAGCAATCCTCATGCGTTTTATAACTTCA 1272
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1244 TTCTACGTGACGGTAGGGTTTTAGTCGGAGGAAGCAATCCTCATGCGTTTTATAACTACA 1303
Query 1273 CCGGAGTGCTTTTTCCGACGGAGCTGAGCTTAGAAGCTTTCTCTCCGGTTTATCTACAAC 1332
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1304 CCGGAGTGCTTTTCCCGACGGAGTTGAGCTTAGAAGCTTTCTCTCCGGTTTACCTACAAC 1363
Query 1333 GGGAGTTTTCGGATCTTCGTCCCAAGATTATATCTCCTAAACCTCAGTCGACGATTAAAT 1392
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1364 GGGAGTTTTCGAATCTTCGTCCCAAGATTATATCTCCTGAACCTCAGTCGATGATTAAAT 1423
Query 1393 ATGGAATGAATCTGAAGTTGAAGTTTACGGTCACGGGAGAAGTTACGACTCCGGTAAAAG 1452
|||| | |||| |||||||||| ||| ||||||| ||||||||||||||||||| ||||
Sbjct 1424 ATGGGACGAATTTGAAGTTGAAATTTTCGGTCACCGGAGAAGTTACGACTCCGGCGAAAG 1483
Query 1453 TGACGT-TGGTGTTTCCGACGTTCACGACGCATAGCTTCGCGATGAATCAGAGGGTTTTG 1511
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 TGAC-TATGGTATTTCCGACGTTCACGACGCATAGCTTCGCGATGAATCAGAGGGTTTTG 1542
Query 1512 GTTTTGGACAATGTTAAGCTTACCAGGAAAGGCAAATCGCCGACGTATGAGGTTCAAGTG 1571
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1543 GTTTTGGACAATGTTAAGTTTACGAGGAAAGGCAAATCGCCGATGTATGAGGTTCAAGTG 1602
Query 1572 AGGACTCCAAAGTCGGCGAATATTGCATGGCCTGGTTATTATATGATCTTTGTGGTGAAT 1631
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1603 AGGACTCCGAGGTCGGCGAATATTGCATGGCCTGGTTATTATATGATTTTTGTGGTGAAT 1662
Query 1632 CAAAACATACCAAGTGAAGGTGTTTGGGTAAGGTTACAATGATTCATTGACTCtttattt 1691
||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 1663 CAAGACATACCAAGCGAAGGTGTTTGGGTAAAGTTAGAATGATTCATTGACT-TTTATTT 1721
Query 1692 tatatctttatttttgtgtgt--ttgtgttatatttatGGAATGGATATCAATTGTATAT 1749
|||||||||||||||||||| |||||||||||| | || |||||||||||||||
Sbjct 1722 AATATCTTTATTTTTGTGTGTAATTGTGTTATATT-AC----TG-ATATCAATTGTATAT 1775
Query 1750 GATTGTGATAAGAATATCTGTTCTCAATTTGATGATAATAAATTA 1794
|| ||| |||||||||| | ||||||| |||||||||||||||||
Sbjct 1776 GAATGTAATAAGAATATGTCTTCTCAACTTGATGATAATAAATTA 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5