BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472216
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V... 1079 0.0
AT1G75630.2 | Symbols: AVA-P4 | vacuolar H+-pumping ATPase 16 k... 460 6e-129
AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0... 440 8e-123
> AT1G19910.1 | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0
complex, subunit C protein | chr1:6913229-6914594 FORWARD
LENGTH=858
Length=858
Score = 1079 bits (584), Expect = 0.0
Identities = 685/728 (94%), Gaps = 29/728 (4%)
Strand=Plus/Plus
Query 1 ATGGTTTCAAGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ATGGCTTCAACTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCC 148
Query 61 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCCGCTCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGT 208
Query 121 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCGGTGGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 209 GTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGTT 268
Query 181 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATGGCTGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATC 328
Query 241 AACCCTAAGGCCAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 AACCCTAAGGCCAAGTCTTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTT 388
Query 301 GCTTGTGGTCTCGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGT 448
Query 361 GTTAGAGCGAATGCACAACAACCCAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 449 GTTAGAGCGAATGCACAACAACCTAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTT 508
Query 421 GCTGAGGCACTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGT 480
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 509 GCTGAAGCACTTGCCCTGTACGGTCTCATTGTTGGTATCATCCTCTCTTCTCGAGCTGGT 568
Query 481 CAGTCTAGAGCCGAGTGAAATCCAGA-T-tctctctctct---c--CT----T----GTA 525
|||||||||||||||||||||||||| | ||||||||||| | || | |||
Sbjct 569 CAGTCTAGAGCCGAGTGAAATCCAGAGTATCTCTCTCTCTTATCGGCTACAGTCCTTGTA 628
Query 526 ATGTTTTGGTATATTTTACTTCCAGtttttttCTTTTGTGGTATTGTGAGTTTTTGAGTT 585
|||||||||||||||||||| | ||||| |||||||||||| || |||| |||||
Sbjct 629 ATGTTTTGGTATATTTTACT-CT-GTTTT---CTTTTGTGGTAT-GT---TTTT-GAGTT 678
Query 586 TCTCATGAAAACAAGCAACATGGGTGAAAATTATTTGACTTTTGTTTCAAAACCG-TTTC 644
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 679 TCTCATGAAAACAAGCAACATGGGTGAAATTTATTTGACTTTTGTTTCAAAACCCATTTC 738
Query 645 T---CTTTTTCATTTGCACACTATATATGGATACATCAATAAGTAATAAAATATGACGAT 701
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTTTCTTTTTCATTTGCACACTATATATGGATACATCAATAAGTAATAAAATATGACGAT 798
Query 702 TCAACGAT 709
|||| |||
Sbjct 799 TCAATGAT 806
> AT1G75630.2 | Symbols: AVA-P4 | vacuolar H+-pumping ATPase 16
kDa proteolipid subunit 4 | chr1:28400544-28402355 FORWARD
LENGTH=1044
Length=1044
Score = 460 bits (249), Expect = 6e-129
Identities = 323/360 (90%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 6 TTCAAGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGC 65
|||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 127 TTCAGGTTTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGC 186
Query 66 TCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGC 125
||||||||||||||||||||||||||||||||||| |||||||| || ||||| || ||
Sbjct 187 GCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGC 246
Query 126 GTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCGGTGGTTATGGC 185
||||||||| ||||||||||| || ||||| ||||||||||||||||| || || |||||
Sbjct 247 GTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGTCATGGC 306
Query 186 TGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATTAACCC 245
||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 307 TGGTGTGTTAGGTATTTATGGTTTGATCATCGCTGTTATCATCAGTACTGGGATTAACCC 366
Query 246 TAAGGCCAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTG 305
||||||||||| || || ||||||||||||||||||||||||||||| || || |||||
Sbjct 367 CAAGGCCAAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTG 426
Query 306 TGGTCTCGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAG 365
|||||| || |||||||| || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 427 TGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 486
Score = 189 bits (102), Expect = 3e-47
Identities = 124/135 (92%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 366 AGCGAATGCACAACAACCCAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCTGA 425
||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 589 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 648
Query 426 GGCACTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGTCAGTC 485
|| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 649 AGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 708
Query 486 TAGAGCCGAGTGAAA 500
|||||| ||||||||
Sbjct 709 TAGAGCTGAGTGAAA 723
> AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0
complex, subunit C protein | chr4:16567824-16569295 REVERSE
LENGTH=1024
Length=1024
Score = 440 bits (238), Expect = 8e-123
Identities = 410/494 (83%), Gaps = 7/494 (1%)
Strand=Plus/Plus
Query 13 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGCTCTCGTT 72
||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| ||||||
Sbjct 140 TTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCCGCACTCGTT 199
Query 73 TTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATG 132
||||||||||||||||| || || || || || ||||| || |||||||| || || |||
Sbjct 200 TTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATG 259
Query 133 GGTGTGATGAGACCAGAGCTT-GTGATGAAATCGATTGTTCCGGTGGTTATGGCTGGAGT 191
|| || |||||||| ||| || ||||||||||| ||||| || || ||||||||||||||
Sbjct 260 GGAGTTATGAGACCTGAG-TTGGTGATGAAATCTATTGTCCCTGTTGTTATGGCTGGAGT 318
Query 192 TTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATTAACCCTAAGGC 251
|| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 319 GTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAACCCCAAGGC 378
Query 252 CAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCT 311
||||| ||||| || || ||||| || || |||||||| || |||||||||||||||||
Sbjct 379 TAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCTTGTGGTCT 438
Query 312 CGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGAGCGAA 371
|| |||||||| || || ||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 439 TGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTCAGGGCAAA 498
Query 372 TGCACAACAACCCAAGTTGTTTGT-GGGAATGATTCTGATTCTCATCTTT-GCTGAGGCA 429
||| || || || ||| | ||||| |||| ||||||| || || || ||| || || ||
Sbjct 499 TGCTCAGCAGCCTAAGCTCTTTGTTGGGA-TGATTCTTATCCTTAT-TTTCGCAGAAGCG 556
Query 430 CTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGTCAGTCTAGA 489
||||| || ||||| || ||||| || ||||| || || || |||||||| |||||||||
Sbjct 557 CTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTTTCCTCACGAGCTGGCCAGTCTAGA 616
Query 490 GCCGAGTGA-AATC 502
|| || ||| ||||
Sbjct 617 GCTGAATGAGAATC 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5