BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472217
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/arch... 2649 0.0
> AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr1:6914613-6916805
REVERSE LENGTH=1801
Length=1801
Score = 2649 bits (1434), Expect = 0.0
Identities = 1614/1701 (95%), Gaps = 11/1701 (1%)
Strand=Plus/Plus
Query 1 AAAAAGCAAAGGAGCCAAAAGTGGAATAACGTGTGGATCTTCTTCTTCTTCCTCCAACAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 AAAAAGCAAAGGAGCCAAAAGTGGAATAACGTGTGGATCTTCTTCTTCCTCCTCCAACAT 61
Query 61 GTTCGTCCAAATCTCACCTTCACTGTTCACTCTCTACTCTCCACTTCTCTCGCTTTTTTC 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 GTTCCTCCTAATCTCACCTTCACTGTTCACTCTCTACTCTCCACTTCTCTCGCTTTTGTC 121
Query 121 CCAAAGTAGCTATCTTCTTCACCAAGATCCATGTCTCTTCTGATCAGATCCTCCTCTTAT 180
|||||||||||| |||||| |||||| |||||||||| |||||||| ||||||||
Sbjct 122 CCAAAGTAGCTA---TCTTCAACAAGATTCATGTCTCTTATGATCAGA---TCCTCTTAC 175
Query 181 GTTTCTCACCTCACTCTCTTCCAACCTAGAAATTCAAAACCATCCTCTTTCACCAATCAA 240
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 176 GTTTCTCACATCACTCTCTTCCAACCTAGAAACTCAAAACCATCCTCTTTCACCAACCAA 235
Query 241 ATCTCCTTCGTTTCTTCTTTC-AATCACAACCCTTTTCTCAATTTGGTCTATAAACGAAA 299
||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 236 ATCTCCTTCCTTTCCTC-TTCTAATAACAACCCTTTTCTCAATTTGGTCTATAAACGAAA 294
Query 300 CCCAACAATGCAATCTGTTTCGAAAATGACTGTTAAGAGCTCATTGATTGATCCCGACGG 359
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 CCTAACAATGCAATCTGTTTCGAAAATGACTGTTAAGAGCTCGTTGATTGATCCCGACGG 354
Query 360 TGGTGAATTGGTGGAATTGATTGTACCGGAATCTGAAATCGGAGCGAAGAGAGCTGAATC 419
||||||||||||||||||||||||||||||| |||| || |||| ||||| |||||||||
Sbjct 355 TGGTGAATTGGTGGAATTGATTGTACCGGAAACTGAGATTGGAGTGAAGAAAGCTGAATC 414
Query 420 AGAGACGATGCCGAAAGTGAAGCTGACGAAGATTGATCTTGAGTGGGTTCATGTGATTAG 479
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 AGAGACGATGCCTAAAGTGAAGCTGAATCAGATTGATCTTGAGTGGGTTCATGTGATTAG 474
Query 480 TGAAGGCTGGGCTAGTCCTTTAAAAGGGTTCATGAGAGAAGATGAGTATCTACAAAGTTT 539
|||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 475 TGAAGGTTGGGCTAGTCCTTTAAAAGGGTTCATGAGAGAAGATGAGTATTTGCAAAGTTT 534
Query 540 GCATTTTAATTCTCTTAGATTAAAAAATGGGACTTTTGTGAATATGTCTCTTCCTATTGT 599
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 GCATTTTAATTCTCTTAGGTTAAAAAATGGGACTTTTGTGAACATGTCTCTTCCTATTGT 594
Query 600 TCTTGCTATTGATGAAGAGACTAAGGAACAAATCGGATCATCCAAGAATGTTGCTCTTGT 659
||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 595 TCTTGCTATTGATGATGATACTAAGGAACAGATCGGATCATCTGAGAATGTTGCTCTTGT 654
Query 660 TAGCCCTCAAGGAGATATCATTGGTTCTCTTCGAAGTGTAGAGATATACAAACACAACAA 719
| |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 655 TTGCCCTCAAGGAGATATCATTGGTTCTCTCCGAAGTGTGGAGATTTACAAACACAATAA 714
Query 720 GGAAGAGAGGATAGCTCGGACTTGGGGAACTACTACTCCAGGATTGCCTTATGTGGAAGA 779
|||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 715 GGAAGAAAGGATAGCTAGAACTTGGGGAACTACTTCTCCAGGATTGCCTTATGTGGAAGA 774
Query 780 ATACATTACTCCATCTGGAAACTGGTTAATTGGTGGTGATTTAGAAGTTTTT-AAGCCGA 838
||| ||||||||||||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct 775 ATATATTACTCCATCTGGAAACTGGCTGATTGGTGGTGATTTAGAAGTTTTTGAA-CCGA 833
Query 839 TTAAGTATAATGATGGGCTTGATCATTATAGGCTATCTCCTAAACAGCTTAGGGAAGAGT 898
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 834 TTAAGTATAACGATGGGCTTGATCATTACAGGCTCTCTCCTAAACAGCTTAGGGAAGAGT 893
Query 899 TTGATAATCGTCAAGCGGATGCTGTTTTTGCGTTTCAGTTAAGGAATCCGGTGCACAATG 958
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 894 TTGATAATCGTCAAGCAGATGCTGTTTTTGCGTTTCAGTTAAGGAATCCTGTGCACAATG 953
Query 959 GACATGCTCTGTTGATGAATGATACCCGGAAAAGGCTTTTGGAAATGGGTTACAAGAACC 1018
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 954 GACATGCTCTGTTGATGAATGATACACGGAAAAGGCTTTTGGAAATGGGGTACAAGAACC 1013
Query 1019 CTATTCTCTTACTTCATCCTTTAGGAGGTTTCACAAAAGCTGATGATGTTCCTCTTGATG 1078
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1014 CTGTTCTCTTGCTTCATCCTTTAGGAGGTTTCACTAAAGCTGATGATGTTCCTCTTGATG 1073
Query 1079 TTAGAATGGAACAACATAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTAGAATGGAACAACATAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTA 1133
Query 1139 TTGTCTCGATATTTCCATCACCGATGCACTATGCTGGTCCAACTGAAGTTCAATGGCACG 1198
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGTCTCGATCTTTCCGTCACCGATGCACTATGCTGGTCCAACTGAAGTTCAATGGCACG 1193
Query 1199 CCAAGGCAAGAATTAACGCCGGTGCTAATTTCTACATTGTAGGTCGTGATCCTGCAGGAA 1258
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CCAAGGCAAGGATTAACGCTGGTGCTAATTTCTACATTGTAGGTCGTGATCCTGCAGGAA 1253
Query 1259 TGGGCCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAAAGTCTTAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 TGGGCCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAGAGTCTTAA 1313
Query 1319 GCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGGTTGCAGCTTACGATA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGGTTGCAGCTTACGATA 1373
Query 1379 CAATCGAGAAGAAGATGGCGTTTTTCGATCCCTCTCGTGCAAAAGAGTTTCTTTTCATTT 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 CAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTT 1433
Query 1439 CTGGAACAAAGATGCGAACCTATGCAAGAACAGGGGAGAATCCTCCAGATGGGTTTATGT 1498
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1434 CTGGAACAAAGATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGT 1493
Query 1499 GTCCAAGCGGATGGAATGTTCTTGTCAGATACTATGAGAGCTTGCAAGAAAGCGAAGCCA 1558
|||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 1494 GTCCGAGTGGATGGAATGTTCTTGTCAAATACTATGAGAGCTTGCAAGAGAGCGAAGCAA 1553
Query 1559 AACAACAAGCCGTTGTTTCAGCCTAAAGAATCCAATTGCATCTCTTTCAAAACTGAAGCT 1618
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||
Sbjct 1554 AACAACAAGCCGTTGTTTCAGCCTAAAGAATCCAGTTGCATCTCTTTCAGAATTGAAACT 1613
Query 1619 CCTTAGTGATCTATATAAGGCTTTTGTTTCACCTTTCATTGTTTTGTTTAAACTACTACC 1678
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1614 CCTTAGTGATCTATATGAGGCTTTTGTTTCACCTTTCATTGTTTTGTTTAAATTACTACC 1673
Query 1679 -TTGGATCCATGTTTTTGTCT 1698
||||||||||||||||||||
Sbjct 1674 CTTGGATCCATGTTTTTGTCT 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5