BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472220

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19960.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   520    5e-147
  AT2G32140.1 | Symbols:  | transmembrane receptors | chr2:136556...   191    5e-48 


> AT1G19960.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: transmembrane receptors (TAIR:AT2G32140.1); Has 41 
Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria 
- 2; Metazoa - 23; Fungi - 0; Plants - 11; Viruses - 0; Other 
Eukaryotes - 5 (source: NCBI BLink). | chr1:6928039-6928463 
FORWARD LENGTH=425
Length=425

 Score =  520 bits (281),  Expect = 5e-147
 Identities = 328/350 (94%), Gaps = 5/350 (1%)
 Strand=Plus/Plus

Query  1    GTATGAGCACTCTTCACTCTTAGCAACCACGAGCACAAGAAAACATGAGCGACCCTAGCG  60
            |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    GTATGAGCGCTCTTCACTCTTAGCAACCACGAGCACAAGAAAATATGAGCGACCCTAGCG  60

Query  61   GCCAATCTTCAACAACGACTGTCGGTGGAAACGGCGGCGGCAGCGGTAGTAACGGGGGAG  120
            ||||||||||||||||||||||||||||||  | |||||| |||||| ||||||| ||||
Sbjct  61   GCCAATCTTCAACAACGACTGTCGGTGGAATTGCCGGCGGTAGCGGTTGTAACGGAGGAG  120

Query  121  GTGGTGGAAGTGGCGGTGGAAGCGGTGGCTCCTTTGGGAATCAGCCGAGGAGATCAAAGG  180
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  121  GTGGTGGAAGTGGCAGTGGAAGCGGCGGCTCCTTTGGGAATCAGCCGAGGAGATCAAAGG  180

Query  181  TGAGGAAGCAAGTGTGGGCTGGAGTTCTCGGCATCTCCTCCAACTCCACCAACAATTAAT  240
            ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct  181  TGAGGAAGCAAGTGTGGGCTGGAGTACTCGGCATCTCATCCGACTCCACCAACAATTAAT  240

Query  241  AGTTTTTAATTCTTTCTTTCTCTTTTCACCTAAAAAAT-ATGTCTAGTGAAAAATGGTGG  299
            ||||| |  | |||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct  241  AGTTTCT--T-CTTTCTTTCTCTTTTCACCTAAGAAATCATGTGTAGTGAAAAATGGTGG  297

Query  300  TGGTAATTACTATGCTTGATCATCATT-CATGTTAACTGTGTCTAAATAA  348
            |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  298  TGGTAATTACTATGCTTGATCATCGTTTCATGTTAACTGTGTCTAAATAA  347


> AT2G32140.1 | Symbols:  | transmembrane receptors | chr2:13655627-13657175 
REVERSE LENGTH=1291
Length=1291

 Score =  191 bits (103),  Expect = 5e-48
 Identities = 124/134 (93%), Gaps = 1/134 (1%)
 Strand=Plus/Plus

Query  106   GTAGTAACGGGGGAGGTGGTGGAAGTGGCGGTGGAAGCGGTGGCTCCTTTGGGAATCAGC  165
             |||||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||||||||
Sbjct  1059  GTAGTAACGGAGGAGGTGGTGGAAGTGGCAGTGGAAGCGGTAGCTCCCTTGAGAATCAGC  1118

Query  166   CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGGAGTTCTCGGCATCTCCTCCAACT  225
             |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct  1119  CGAGGAGATCAAAGGTGAGGAAGCAAGTGTGGGCTGAAGTTCTCGGCATCTCATCCGACT  1178

Query  226   CCACCAACA-ATTA  238
             |||||| || ||||
Sbjct  1179  CCACCATCATATTA  1192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18196925138


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5