BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472221
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19968.1 | Symbols: | other RNA | chr1:6930261-6930985 FORW... 841 0.0
> AT1G19968.1 | Symbols: | other RNA | chr1:6930261-6930985 FORWARD
LENGTH=725
Length=725
Score = 841 bits (455), Expect = 0.0
Identities = 579/635 (91%), Gaps = 23/635 (4%)
Strand=Plus/Plus
Query 1 AACAAAACACATGCAAGCCAGGCTATAAGAGACTTTATAATACACACCAAACTATGCAAA 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2 AACAAAACACATGCAAGACAGGCTATAAGAGACTTTATAATATACACCAAACTATGCAAA 61
Query 61 AACCATTTCAGAGAGCTCATCCT-A-ACACA----CACTCCTTCACTATTCATATAAACG 114
||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||
Sbjct 62 AACCATTTCAGAGAGCTCATCCTAACACACACTCGCACTCCTTCACCATTCATATAAACG 121
Query 115 AACCATTAAATCATCATCGTTACTTGGACCATCATCATAATCACAATAACAAGACCTTCA 174
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 AACCATTTAATCATCATCGTTACTTGGACCATCATCATAATCACAAT------ACCTTCA 175
Query 175 TAGGTTTATCTTCATCCATGAAGCTCTTCTCCAAATTCCGCAAGATTTTCATGAGGATCA 234
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 176 TAGGTTTATCTTCATCAATGAAGCTCTTCTCCAAATTCCGCAAAATTTTCATGAAGATCA 235
Query 235 TCTTCAC-CTT--TCCTTCCTCCTCCGCCACCGTGCGTCCTCACAAAACAGCTGACTCCG 291
||||| | ||| | ||||||||||||| ||||| |||||||||||||| ||||||| ||
Sbjct 236 TCTTCGCGCTTCCTTCTTCCTCCTCCGCAACCGTACGTCCTCACAAAACCGCTGACTTCG 295
Query 292 GCAATGGTTGTGAGAGGCTAGAGACGCCAAAGATATCGTGCAGTAATTCGTACTACTCCT 351
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 296 GCAATGGTTGTGATAGGCTAGAGACGCCGAAGATATCGTGCAGTAATTCATACTACTCCT 355
Query 352 CACACTCTCACTACAGTGAAGCTATCTCAGATTGTATAGACTTTTTCAATAAGTCTCAAC 411
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CACAATCTCACTACAGTGAAGCTATCTCAGATTGTATAGACTTTTTCAATAAGTCTCAAC 415
Query 412 AAGAAAGTGAAGACCGGATTGTTCATGATCATGACGGTTTTTACGTTTAGTCAAACTTCa 471
||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 416 AAGAAAGTGAAGACCGGATTGCTCATGATCACGACCGTTTTTACGTTTAGTCAAACTTCA 475
Query 472 aaaaaacaaaaaa-aTGtttttttttttCTTCTTCTAAATAACTCAAA-TTTTCTTCTCT 529
|| ||| || || || | | | ||||||||||||| |||||||||| |||||||||||
Sbjct 476 AAGAAA-AATAATGATCTCATGTCTTTTCTTCTTCTAGATAACTCAAAATTTTCTTCTCT 534
Query 530 TAAGCTCAAACTCTTATCTA-TCCGTATTCACAGTCTCTGCATGTTTCCCTGAAAGTTAA 588
||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||
Sbjct 535 TAAGCTCAAACTCTTAT-TAATCTGTATTCACAGTCTCTGCATGTTTCCCTGAAAGTAAA 593
Query 589 TTTCGAGTTCAA-TAACCCCAAAACGGACCTCACA 622
| |||||||||| ||||| |||| ||||||||||
Sbjct 594 TCTCGAGTTCAAATAACC--AAAATGGACCTCACA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5