BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472225

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B | chr...   527    3e-149


> AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B | chr1:6936898-6937666 
REVERSE LENGTH=615
Length=615

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 315/330 (95%), Gaps = 0/330 (0%)
 Strand=Plus/Plus

Query  97   GCCAACAAGATGCAGACCATTTTATCACAATTTACAGAGGATCAAATGAGCAGATATGAA  156
            ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  286  GCCAACAAGATGCAGAAGATTTTATCACAATTTACAGAGGAACAAATGAGCAGATATGAA  345

Query  157  TCTTTCAGGAGATCTGCTTTTAAAAAATCAGACATGGAGAAGTTAGTACAGAGAATCACA  216
            |||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct  346  TCTTTCAGAAGATCTGGTTTTAAGAAATCAGACATGGAGAAGTTGGTACAGAGAATCACA  405

Query  217  GGGGGTCCGAAGATCGACGACACTATGAATATCGTTGTGCGTGGTATCACAAAGATGTTT  276
            |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  406  GGGGGTCCGAAGATGGACGACACTATGAACATCGTTGTGCGTGGTATCGCAAAGATGTTT  465

Query  277  GTTGGTGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAAGAATCAGGACCT  336
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  466  GTTGGCGACCTTGTGGAAACAGCTCGAGTTGTTATGAGGGAAAGGAAGGAATCAGGACCT  525

Query  337  ATTAGACCTTGCCATATCAGAGAGTCCTATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT  396
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  526  ATTAGACCTTGCCATATCAGAGAGTCATATCGAAGACTAAAGCTCCAAGGAAAAGTGCCT  585

Query  397  CAGAGATCAGTTCAACGGCTTTTCCGCTAG  426
            || |||||||||||||||||||| ||||||
Sbjct  586  CAAAGATCAGTTCAACGGCTTTTTCGCTAG  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5