BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472226
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20010.1 | Symbols: TUB5 | tubulin beta-5 chain | chr1:69377... 2531 0.0
AT1G75780.1 | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451... 1585 0.0
AT5G12250.1 | Symbols: TUB6 | beta-6 tubulin | chr5:3961106-396... 1061 0.0
AT4G20890.1 | Symbols: TUB9 | tubulin beta-9 chain | chr4:11182... 959 0.0
> AT1G20010.1 | Symbols: TUB5 | tubulin beta-5 chain | chr1:6937795-6940582
REVERSE LENGTH=1689
Length=1689
Score = 2531 bits (1370), Expect = 0.0
Identities = 1520/1592 (95%), Gaps = 11/1592 (1%)
Strand=Plus/Plus
Query 1 AACAGAGACAATTGGTTATATTAGCTGTCTCTCCCCATCTTTCATATTCCTTCACCAtct 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 AACAGAGACAATTGGTTATATTAGCTGTCACT-CCCATCTTTCATATTCCTTCACCATCT 59
Query 61 ctctctctctcGATCTTGTGAACcaccacacacacactcacacaATGAGAGAGATCCTTC 120
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 60 CTCTCTCTCTCGATCTTGTGAACCA-C-TACACACACTAACACAATGAGAGAGATCCTTC 117
Query 121 ACATTCAAGGTGGTCAATGCGGAAACCAGATTGGTTCCAAGTTCTGGGAAGTCATCTGCG 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 ACATTCAAGGTGGTCAATGCGGTAACCAGATTGGTTCCAAGTTCTGGGAAGTCATCTGCG 177
Query 181 ACGAGCACGGTATCGATTCCACCGGACGTTACAGCGGAGACACTGCAGATCTCCAGCTCG 240
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 178 ACGAGCACGGCATCGATTCCACCGGACGTTACAGTGGAGACACTGCAGATCTCCAGCTTG 237
Query 241 AACGTATCAATGTCTATTACAATGAGGCTTCTGGTGGAAGATACGTTCCTCGTGCTGTTC 300
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 238 AACGTATCAATGTCTATTACAATGAAGCTTCAGGTGGAAGATACGTTCCTCGTGCTGTTC 297
Query 301 TCATGGATCTTGAGCCTGGTACTATGGATAGTATCAGATCCGGACCGTTTGGTCAGATCT 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTATGGATCTTGAGCCTGGTACTATGGATAGTATCAGATCCGGACCGTTTGGTCAGATCT 357
Query 361 TCCGTCCTGATAACTTTGTCTTTGGTCAGTCTGGTGCTGGTAATAATTGGGCTAAAGGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCGTCCTGATAACTTTGTCTTTGGTCAGTCTGGTGCTGGTAATAATTGGGCTAAAGGTC 417
Query 421 ATTACACTGAAGGAGCTGAACTTATTGATGCTGTTCTTGATGTTGTTCGCAAAGAAGCTG 480
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 ATTACACTGAAGGTGCTGAACTTATTGATGCTGTTCTTGATGTTGTTCGTAAAGAAGCTG 477
Query 481 AGAACTGCGATTGCCTTCAAGGGTTTCAAGTGTGCCACTCTTTGGGAGGAGGCACAGGTT 540
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 478 AGAACTGCGATTGCCTTCAAGGGTTTCAGGTGTGCCATTCGTTGGGAGGAGGCACAGGTT 537
Query 541 CAGGAATGGGAACTCTATTGATATCGAAGATCCGAGAGGAGTATCCAGACAGAATGATGC 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAGGAATGGGAACACTATTGATATCGAAGATCCGAGAGGAGTATCCAGACAGAATGATGC 597
Query 601 TCACTTTCTCTGTTTTCCCATCTCCAAAAGTCTCTGACACTGTCGTTGAGCCTTACAATG 660
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 598 TCACTTTCTCTGTTTTCCCATCTCCTAAAGTCTCTGACACAGTCGTTGAGCCTTACAATG 657
Query 661 CAACTCTCTCTGTCCACCAGCTTGTAGAGAACGCTGATGAATGTATGGTCCTCGACAATG 720
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 CAACTCTCTCTGTCCATCAGCTTGTAGAGAACGCTGATGAATGCATGGTCCTCGACAATG 717
Query 721 AAGCTCTCTACGATATCTGCTTCCGTACCCTCAAACTCAGCACTCCTAGCTTCGGAGACT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 AAGCTCTCTACGATATCTGCTTCCGTACCCTCAAACTCAGCACTCCTAGCTTTGGAGACT 777
Query 781 TGAACCATTTGATCTCCGCAACAATGAGTGGTGTGACTTGCTCCTTAAGGTTCCCGGGAC 840
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 778 TGAACCATTTGATCTCCGCAACAATGAGCGGTGTGACTTGCTCCTTAAGGTTCCCCGGAC 837
Query 841 AGCTAAACTCTGACCTGAGGAAACTCGCGGTGAACCTAATCCCATTCCCTCGTCTCCATT 900
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AACTAAACTCTGACCTCAGGAAACTCGCGGTGAACCTAATCCCATTCCCTCGTCTCCATT 897
Query 901 TCTTCATGGTGGGTTTCGCGCCGCTAACTTCCCGTGGCTCACAACAATACATCTCACTCA 960
|||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||
Sbjct 898 TCTTCATGGTGGGTTTTGCGCCCCTCACTTCCCGTGGCTCGCAACAATACATCTCACTCA 957
Query 961 CAGTCCCTGAGCTGACTCAACAAATGTGGGACTCCAAAAACATGATGTGTGCAGCTGATC 1020
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCGTTCCTGAGCTGACTCAACAAATGTGGGACTCCAAAAACATGATGTGTGCAGCTGATC 1017
Query 1021 CACGTCACGGACGTTACCTCACAGCATCGGCTATTTTCCGAGGACAGATGAGCACAAAAG 1080
||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 1018 CACGTCACGGACGTTACCTCACAGCCTCTGCTATTTTCAGAGGACAGATGAGCACAAAAG 1077
Query 1081 AAGTCGATGAGCAAATCCTAAACATACAGAACAAGAACTCGTCTTACTTCGTTGAGTGGA 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGTCGACGAGCAAATCCTAAACATACAGAACAAGAACTCGTCTTACTTCGTTGAGTGGA 1137
Query 1141 TCCCAAACAATGTAAAATCCAGCGTTTGTGATATCCCACCAAAGGGACTTAAAATGGCGG 1200
|||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1138 TCCCAAACAACGTGAAATCCAGCGTTTGTGATATCCCACCAAAGGGGCTCAAAATGGCGG 1197
Query 1201 CGACGTTTGTGGGTAACTCGACGTCGATCCAAGAAATGTTTAGGAGAGTGAGTGAGCAAT 1260
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1198 CGACGTTTGTGGGTAACTCGACGTCGATTCAAGAAATGTTCAGGAGAGTGAGTGAGCAGT 1257
Query 1261 TCACGGCTATGTTTAGGCGTAAAGCGTTTCTGCATTGGTACACAGGAGAAGGAATGGATG 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 TCACGGCTATGTTTAGGCGTAAAGCGTTTCTGCATTGGTACACAGGAGAAGGAATGGACG 1317
Query 1321 AAATGGAGTTTACGGAAGCTGAGAGCAATATGAATGATTTGGTCGCTGAATACCAACAGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAATGGAGTTTACGGAAGCTGAGAGCAATATGAATGATTTGGTCGCTGAATACCAACAGT 1377
Query 1381 ACCAAGATGCTACTGCTGATGAGGAAGGTGAGTATGAGGATGAAGAAGAAGAGGAGGAAG 1440
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1378 ACCAAGATGCTACTGCTGATGAGGAAGGTGAGTATGATGTTGAAGAAGAAGAGGAGGGAG 1437
Query 1441 CTTACGAGACTTGATCCATCACATCAAACATTATAAA-AAAGAGAGAAGGAAACGACTCT 1499
||| ||||||||||||| || |||||||||| || ||| ||| ||||||||||||||
Sbjct 1438 ATTATGAGACTTGATCCACCAAATCAAACATTTTACTTAAA-AGACAAGGAAACGACTCT 1496
Query 1500 TG-ATAATATCTCTTTTTAAATTTGATTAAAATTAAAACTCTGAGAAAATGGGAAAtttg 1558
|| | ||| ||||| ||||||||||||| ||| || | | ||| |||||||||||||||
Sbjct 1497 TGGA-AATCTCTCTATTTAAATTTGATTGAAA--AACA-T-TGAAAAAATGGGAAATTTG 1551
Query 1559 ttttaatgtgttttttgtttgagtaattagtt 1590
||| |||||||||||||||||||||||| |||
Sbjct 1552 TTTAAATGTGTTTTTTGTTTGAGTAATTTGTT 1583
> AT1G75780.1 | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451141-28453640
REVERSE LENGTH=1619
Length=1619
Score = 1585 bits (858), Expect = 0.0
Identities = 1172/1328 (88%), Gaps = 4/1328 (0%)
Strand=Plus/Plus
Query 105 ATGAGAGAGATCCTTCACATTCAAGGTGGTCAATGCGGAAACCAGATTGGTTCCAAGTTC 164
|||||||| ||||| ||| | ||||| || |||||||| ||||| || |||||||| |||
Sbjct 39 ATGAGAGAAATCCTCCACGTCCAAGGCGGCCAATGCGGTAACCAAATCGGTTCCAAATTC 98
Query 165 TGGGAAGTCATCTGCGACGAGCACGGTATCGATTCCACCGGACGTTACAGCGGAGACACT 224
|||||||| ||||||||||| ||||| | ||| ||||||||||||||| ||| || |
Sbjct 99 TGGGAAGTTATCTGCGACGAACACGGCGTTGATCCCACCGGACGTTACAACGGTGATTCC 158
Query 225 GCAGATCTCCAGCTCGAACGTATCAATGTCTATTACAATGAGGCTTCTGGTGGAAGATAC 284
|| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| | |||
Sbjct 159 GCCGATCTTCAGCTCGAACGTATCAATGTTTATTACAATGAAGCTTCTGGTGGTCGTTAC 218
Query 285 GTTCCTCGTGCTGTTCTCATGGATCTTGAGCCTGGTACTATGGATAGTATCAGATCCGGA 344
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 219 GTTCCTCGTGCTGTTCTCATGGATCTCGAGCCTGGTACTATGGATAGTATCAGATCTGGT 278
Query 345 CCGTTTGGTCAGATCTTCCGTCCTGATAACTTTGTCTTTGGTCAGTCTGGTGCTGGTAAT 404
|| | |||||||| ||||||||||||||||| ||||||||||| || ||||| || |||
Sbjct 279 CCCTACGGTCAGATTTTCCGTCCTGATAACTTCGTCTTTGGTCAATCCGGTGCCGGAAAT 338
Query 405 AATTGGGCTAAAGGTCATTACACTGAAGGAGCTGAACTTATTGATGCTGTTCTTGATGTT 464
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 339 AATTGGGCGAAAGGTCATTATACTGAAGGTGCTGAACTTATTGATGCTGTTCTCGATGTT 398
Query 465 GTTCGCAAAGAAGCTGAGAACTGCGATTGCCTTCAAGGGTTTCAAGTGTGCCACTCT-TT 523
||||| || |||||||||||||| ||||||||||||||||||||||| || |||||| ||
Sbjct 399 GTTCGTAAGGAAGCTGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTATGTCACTCTCTT 458
Query 524 GGGAGGAGGCACAGGTTCAGGAATGGGAACTCTATTGATATCGAAGATCCGAGAGGAGTA 583
|| ||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 459 GG-AGGAGGCACGGGTTCAGGAATGGGAACTCTCTTGATATCAAAGATCCGTGAGGAATA 517
Query 584 TCCAGACAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCAAAAGTCTCTGACACTGT 643
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct 518 CCCAGACAGAATGATGCTCACATTCTCTGTTTTCCCATCTCCAAAGGTCTCAGACACAGT 577
Query 644 CGTTGAGCCTTACAATGCAACTCTCTCTGTCCACCAGCTTGTAGAGAACGCTGATGAATG 703
||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 578 CGTTGAGCCGTACAATGCAACTCTCTCAGTCCACCAACTTGTAGAGAATGCTGATGAATG 637
Query 704 TATGGTCCTCGACAATGAAGCTCTCTACGATATCTGCTTCCGTACCCTCAAACTCAGCAC 763
|||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 638 CATGGTCCTCGACAACGAAGCTCTTTACGATATCTGTTTCCGCACTCTCAAACTCAGCAC 697
Query 764 TCCTAGCTTCGGAGACTTGAACCATTTGATCTCCGCAACAATGAGTGGTGTGACTTGCTC 823
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 698 TCCTAGCTTTGGAGACTTGAACCACTTGATCTCCGCAACTATGAGTGGTGTGACTTGCTC 757
Query 824 CTTAAGGTTCCCGGGACAGCTAAACTCTGACCTGAGGAAACTCGCGGTGAACCTAATCCC 883
||||| ||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||
Sbjct 758 TTTAAGATTCCCTGGACAACTCAACTCTGACCTTAGGAAACTCGCCGTGAACCTTATCCC 817
Query 884 ATTCCCTCGTCTCCATTTCTTCATGGTGGGTTTCGCGCCGCTAACTTCCCGTGGCTCACA 943
|||||||||||| |||||||||||||| |||||||| || || |||||||||||||| ||
Sbjct 818 ATTCCCTCGTCTACATTTCTTCATGGTTGGTTTCGCCCCTCTCACTTCCCGTGGCTCTCA 877
Query 944 ACAATACATCTCACTCACAGTCCCTGAGCTGACTCAACAAATGTGGGACTCCAAAAACAT 1003
||| |||||||| ||||||||||| |||||||| || |||||||||||| | || |||||
Sbjct 878 ACAGTACATCTCTCTCACAGTCCCGGAGCTGACACAGCAAATGTGGGACGCTAAGAACAT 937
Query 1004 GATGTGTGCAGCTGATCCACGTCACGGACGTTACCTCACAGCATCGGCTATTTTCCGAGG 1063
||||||||||||||||||||| |||||||||||||||||||| || || || ||||||||
Sbjct 938 GATGTGTGCAGCTGATCCACGCCACGGACGTTACCTCACAGCTTCAGCCATGTTCCGAGG 997
Query 1064 ACAGATGAGCACAAAAGAAGTCGATGAGCAAATCCTAAACATACAGAACAAGAACTCGTC 1123
| | ||||||||||| ||||| || || || |||||||| | |||||||||||||| ||
Sbjct 998 AAAAATGAGCACAAAGGAAGTGGACGAACAGATCCTAAATGTCCAGAACAAGAACTCATC 1057
Query 1124 TTACTTCGTTGAGTGGATCCCAAACAATGTAAAATCCAGCGTTTGTGATATCCCACCAAA 1183
||||| ||||| ||||||||||||||||| || |||||||| || || || |||||||
Sbjct 1058 CTACTTTGTTGAATGGATCCCAAACAATGTGAAGTCCAGCGTCTGCGACATTCCACCAAC 1117
Query 1184 GGGACTTAAAATGGCGGCGACGTTTGTGGGTAACTCGACGTCGATCCAAGAAATGTTTAG 1243
||| | |||||||| | |||||||| || |||||||| |||||||| |||||||| ||
Sbjct 1118 TGGAATCAAAATGGCTTCCACGTTTGTCGGAAACTCGACTTCGATCCAGGAAATGTTCAG 1177
Query 1244 GAGAGTGAGTGAGCAATTCACGGCTATGTTTAGGCGTAAAGCGTTTCT-GCATTGGTACA 1302
|||||| || || || |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1178 GAGAGTAAGCGAACAGTTCACGGCTATGTTCAGGCGTAAAGC-TTTCTTGCATTGGTACA 1236
Query 1303 CAGGAGAAGGAATGGATGAAATGGAGTTTACGGAAGCTGAGAGCAATATGAATGATTTGG 1362
|||||||||||||||| || |||||||| || ||||| |||||||| ||||||||| |||
Sbjct 1237 CAGGAGAAGGAATGGACGAGATGGAGTTCACTGAAGCAGAGAGCAACATGAATGATCTGG 1296
Query 1363 TCGCTGAATACCAACAGTACCAAGATGCTACTGCTGATGAGGAAGGTGAGTATGAGGATG 1422
|| ||||||||||||| |||||||||||||| |||||||| |||| || ||||| || |
Sbjct 1297 TCTCTGAATACCAACAATACCAAGATGCTACCGCTGATGAAGAAGACGAATATGATGAAG 1356
Query 1423 AAGAAGAA 1430
||||||||
Sbjct 1357 AAGAAGAA 1364
> AT5G12250.1 | Symbols: TUB6 | beta-6 tubulin | chr5:3961106-3963522
REVERSE LENGTH=1696
Length=1696
Score = 1061 bits (574), Expect = 0.0
Identities = 1103/1356 (81%), Gaps = 46/1356 (3%)
Strand=Plus/Plus
Query 105 ATGAGAGAGATCCTTCACATTCAAGGTGGTCAATGCGGAAACCAGATTGGTTCCAAGTTC 164
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 136 ATGAGAGAAATCCTTCACATTCAAGGTGGTCAATGTGGGAACCAGATTGGTTCCAAGTTC 195
Query 165 TGGGAAGTCATCTGCGACGAGCACGGTATCGATTCCACCGGACGTTACAG-CGGAGACAC 223
|||||||| | || || ||||| ||||| ||| |||| || |||||| | ||| | ||
Sbjct 196 TGGGAAGTTGTATGTGATGAGCATGGTATTGATCCCACTGGTCGTTAC-GTTGGA-A-AC 252
Query 224 TGCAGATCTCCAGCTCGAACGTATCAATGTCTATTACAATGAGGC-TTCTGGTGGAAGAT 282
| | ||||| ||| | || ||| ||||||| || || || ||||| | || | |||||||
Sbjct 253 T-CTGATCTGCAGTTGGAGCGTGTCAATGTTTACTATAACGAGGCATCCT-GCGGAAGAT 310
Query 283 ACGTTCCTCGTGCTGTTCTCATGGATCTTGAGCCTGGTACTATGGATAGTATCAGATCCG 342
| ||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||| | |
Sbjct 311 ATGTTCCCCGTGCAATTCTCATGGATCTTGAGCCTGGTACTATGGACAGTGTCAGAACTG 370
Query 343 GACCGTT-TGGTCAGATCTTCCGTCCTGATAACTTTGTCTTT-GGTCAGTCTGGTGCTGG 400
|||| || |||||| |||||| | ||||| |||||||| ||| || || |||||||||||
Sbjct 371 GACC-TTATGGTCAAATCTTCAGGCCTGACAACTTTGT-TTTCGGGCAATCTGGTGCTGG 428
Query 401 TAATAATTGGGCTAAAGGTCATTACACTGAAGGAGCTGAACTTATTGATGCTGTTCTTGA 460
|| || ||||||||||| |||||||||||||||||||| |||||||||||||| || ||
Sbjct 429 AAACAACTGGGCTAAAGGGCATTACACTGAAGGAGCTGAGCTTATTGATGCTGTACTCGA 488
Query 461 TGTTGTTCGCAAAGAAGCTGAGAACTGCGATTGCCTTCAAGGGTTTC-AAGTGTGCCACT 519
|||||| |||||||| |||||||| ||||| || |||||||| |||| |||| || ||||
Sbjct 489 TGTTGTACGCAAAGAGGCTGAGAATTGCGACTGTCTTCAAGG-TTTCCAAGTATGTCACT 547
Query 520 CT-TTGGGAGGAGGCACAGGTTCAGGAATGGGAACTCTATTGATATCGAAGATCCGAGAG 578
| |||| |||||||| || || |||||||||||||| | ||||| |||||| | ||
Sbjct 548 CACTTGGT-GGAGGCACCGGGTCTGGAATGGGAACTCTGCTCATATCTAAGATCAGGGAA 606
Query 579 GAGTATCCAGACAGAATGATGCTCAC-TTTCTCTGTTTTCCCATCTCCAAAAGTCTCTGA 637
|||||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||
Sbjct 607 GAGTATCCTGATAGAATGATGCTTACATTT-TCTGTCTTCCCATCACCAAAGGTCTCTGA 665
Query 638 CACTGTCGTTGAGCCTTACAATGCAACTCTCTCTGTCCACCAGCTTGTAGAGAACGCTGA 697
||| || |||||||| |||||||| || || || || || ||||| || || || |||||
Sbjct 666 CACAGTGGTTGAGCCATACAATGCGACACTTTCAGTTCATCAGCTGGTGGAAAATGCTGA 725
Query 698 TGAATGTATGGTCCTCGACAATGAAGCTCTCTACGATATCTGCTTCCGTACCCTCAAACT 757
||| |||||||| | ||||||||||| || ||||| ||||| || | || || || ||
Sbjct 726 TGAGTGTATGGTTTTGGACAATGAAGCCCTTTACGACATCTGTTTTAGAACACTTAAGCT 785
Query 758 CAGCACTCCTAGCTTCGGAGA-CTTGAACCAT-TTGATCTCCGCAACAATGAGTGGTGTG 815
| |||||||||||| || || || ||| ||| || ||||| ||||| |||||||| ||
Sbjct 786 TACCACTCCTAGCTTTGGTGATCT-GAATCATCTT-ATCTCTGCAACCATGAGTGGAGTT 843
Query 816 ACTTGCTC-CTTAAGGTTCCCGGGACAGCTAAACTCTGACCTGAGGAAACTCGCGGTGAA 874
|| |||| |||| |||||||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 844 ACATGCTGTCTTA-GGTTCCCGGGTCAGCTCAACTCTGATCTGAGGAAGCTCGCAGTGAA 902
Query 875 CCTAATCCCATTCCCTCGTCTCCA-TTTCTTCATGGTGGGTTTCGCGCCGCTAACTTCCC 933
||| || || |||||||||||||| ||| |||||||| ||||| || || || || ||||
Sbjct 903 CCTCATTCCTTTCCCTCGTCTCCACTTT-TTCATGGTTGGTTTTGCCCCTCTCACCTCCC 961
Query 934 GTGGCTCACAACAATACA-TCTCACTCACAGTCCCTGAGCTGACTCAACAAATGTGGGAC 992
|||| || || || ||| | ||||||| |||||||||||||| ||||| ||||||||
Sbjct 962 GTGGGTCTCAGCAGTACCGTG-CACTCACTGTCCCTGAGCTGACCCAACAGATGTGGGAT 1020
Query 993 TCCAAA-AACATGATGTGTGCAGCTGATCCACGTCACGGACGTTACCTCACAGCATCGGC 1051
|| ||| ||||||||||| ||||| || || || ||||| || ||||| || || |||||
Sbjct 1021 TC-AAAGAACATGATGTGCGCAGCAGACCCGCGCCACGGGCGGTACCTAACTGCCTCGGC 1079
Query 1052 TATTTTCCGAGGACA-GATGAGCACAAAAGAAGTCGATGAGCAAATCCTAAACATACAGA 1110
|| ||||| || || |||||||||||||||||| || ||||| || ||||| ||||||
Sbjct 1080 CATGTTCCGTGG-CAAGATGAGCACAAAAGAAGTGGACGAGCAGATGATAAACGTACAGA 1138
Query 1111 ACAAGAACTCGTCTTACTTCGTTGAGTGGATCCCAAACAATGTAAAATCCAGCGTTTGTG 1170
|||| ||||| || ||||| || || ||||| |||||||| || || || ||||| ||||
Sbjct 1139 ACAAAAACTCTTCCTACTTTGTGGAATGGATTCCAAACAACGTGAAGTCAAGCGTCTGTG 1198
Query 1171 ATAT--C-CCACCAAAGGGACT-TAAAATGGCGGCGACGTTTGT-GGGTAACTCGACGTC 1225
| || | || || | || || | || |||| |||| ||| | ||| || || || ||
Sbjct 1199 ACATAGCTCC-CCGA-GGT-CTCTCAA-TGGCATCGACATTTATTGGG-AATTCCACATC 1253
Query 1226 GATCCAAGAAATGTTTAGGAGAGTGAGTGAGCAATTCACGGCTATGTTTAGGCGTAAAGC 1285
||||||||| ||||||||| | ||||| ||||| ||||| |||||||| ||| | |||||
Sbjct 1254 GATCCAAGAGATGTTTAGGCGGGTGAGCGAGCAGTTCACTGCTATGTTCAGGAGGAAAGC 1313
Query 1286 GTTTCT-GCATTGGTACACAGGAGAAGGAATGGATGAAATGGAGTTTACGGAAGCTGAGA 1344
||||| ||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 1314 -TTTCTTGCATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTTACTGAAGCTGAGA 1372
Query 1345 GCAATATGAATGATTTGGTCGCTGAATACCAACAGTACCAAGATGCTACTGCTGATGAGG 1404
|||| ||||| ||| | ||| | || ||||| || |||||||| || ||||| ||||| |
Sbjct 1373 GCAACATGAACGATCTAGTCTCAGAGTACCAGCAATACCAAGACGCAACTGCAGATGACG 1432
Query 1405 AAGGTGAGTATGAGGATGAAGAAGAAGAGGAGGAAG 1440
|||| |||||||| | ||||| || || || ||||
Sbjct 1433 AAGGCGAGTATGA--A-GAAGACGAGGATGAAGAAG 1465
> AT4G20890.1 | Symbols: TUB9 | tubulin beta-9 chain | chr4:11182092-11184072
FORWARD LENGTH=1693
Length=1693
Score = 959 bits (519), Expect = 0.0
Identities = 1088/1360 (80%), Gaps = 50/1360 (4%)
Strand=Plus/Plus
Query 104 AATGAGAGAGATCCTTCACATTCAAGGTGGTCAATGCGGAAACCAGATTGGTTCCAAGTT 163
||||||||| || ||||| |||||||| ||||| |||||||||||||| || | |||||
Sbjct 126 AATGAGAGAAATTCTTCATATTCAAGGAGGTCAGTGCGGAAACCAGATCGGAGCTAAGTT 185
Query 164 CTGGGAAGTCATCTGCGACGAGCACGGTATCGATTC-CACCGGAC-GTTACA-GCGGAGA 220
||||||||| || |||| |||||||||||| || || ||||| | | | || | || |
Sbjct 186 CTGGGAAGTTATTTGCGGCGAGCACGGTATTGA-TCAAACCGGTCAG-T-CATGTGGCG- 241
Query 221 CACTGCAGATCTCCAGCTCGAACGTATCAATGTCTATTACAATGAGGCT-TCTGGTGG-A 278
| | ||||||| ||||| ||| | ||||||||||||| || || ||| | || || |
Sbjct 242 -A-TACAGATCTACAGCTTGAAAGGATCAATGTCTATTTTAACGAAGCTAGC-GGAGGCA 298
Query 279 AGATACGTTCCTCGTGCTGTTCTCATGGATCTTGAGCCTGGTACTATGGATAGTATCAGA 338
| ||||||||||||||||||||| |||||||| |||||||| ||||||||| | |||||
Sbjct 299 A-ATACGTTCCTCGTGCTGTTCTTATGGATCTGGAGCCTGGAACTATGGATTCTCTCAGA 357
Query 339 TCCGGACCGTTTGGTCAGATCTTCCGTCCTGATAACTTTGTCTTTGGTCAGTCTGGTGCT 398
|| || |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||
Sbjct 358 TCTGGGCCGTTTGGTCAGATTTTCCGGCCTGATAACTTCGTTTTTGGTCAGTCTGGTGCT 417
Query 399 GGTAATAATTGGGCTAAAGGTCATTACACTGAAGGAGCTGAACTT-ATTGATGCTGTTCT 457
|| ||||| ||||| |||||||||||||| || ||||||| | || |||||| |||| ||
Sbjct 418 GGGAATAACTGGGCGAAAGGTCATTACACGGAGGGAGCTG-AGTTGATTGATTCTGTGCT 476
Query 458 TGATGTTGTTCGCAAAGAAGCTGAGAACTGCGATTGCCTTCAAGGGTTTCAAGTGTGCCA 517
||||||||| | || |||||||||||||| ||||| |||||||| |||||||| || ||
Sbjct 477 TGATGTTGTGAGGAAGGAAGCTGAGAACTGTGATTGTCTTCAAGGTTTTCAAGTTTGTCA 536
Query 518 CTCTTTGGGAGGAGGCACAGGTTCAGGAATGGGAACTC-TATTGATATCGAAGATCCGAG 576
|||||||||||||| || ||||| ||||||||||| | | || || || ||||| |||
Sbjct 537 TTCTTTGGGAGGAGGAACTGGTTCTGGAATGGGAACACTTCTT-ATTTCTAAGATTAGAG 595
Query 577 AGGAGTATCCAGA-CAGAATGATGCTCA-CTTTCTCTGTTTTCCCATCTCCAAAAGTCTC 634
|||| |||||||| | | |||||| | | |||| || || ||||||||||| || |||||
Sbjct 596 AGGAATATCCAGATC-GTATGATGATGACCTTT-TCGGTCTTCCCATCTCCTAAGGTCTC 653
Query 635 TGACACTGTCGTTGAGCCTTACAATGCAACTCTCTCTGTCCACCAGCTTGTAGAGAACGC 694
||| || || |||||||| |||||||| ||||| || || |||||||| || ||||| ||
Sbjct 654 TGATACAGTTGTTGAGCCATACAATGCTACTCTTTCCGTTCACCAGCTCGTTGAGAATGC 713
Query 695 TGATGAATGTATGGTCCTCGACAATGAAGCTCTCTACGATATCTGCTTCCGTACCCTCAA 754
||||||||||||||| | || || |||||||| ||||||||||| ||||||||| | ||
Sbjct 714 TGATGAATGTATGGTTTTGGATAACGAAGCTCTTTACGATATCTGTTTCCGTACCTTGAA 773
Query 755 ACTCAGC-ACTCCTAGC-TTCGGAGA-CTTGAACCATTTGATCTCCGCAACAATGAGTGG 811
|| || | ||||| | || || || ||| |||||| | ||||| || |||||||||||
Sbjct 774 GCT-TGCTAATCCTA-CATTTGGTGACCTT-AACCATCTCATCTCAGCTACAATGAGTGG 830
Query 812 TGTGACTTGCT-CCTTAAGGTTCCCGGGACAGCTAAACTCTGACCTGAGGAAACTCGCGG 870
||| || |||| ||| ||||||| || || |||||||||||||| || ||||| || |
Sbjct 831 TGTTACATGCTGTCTT-CGGTTCCCTGGTCAACTAAACTCTGACCTTAGAAAACTTGCTG 889
Query 871 TGAACCTAATCCCATTCCCTCGTCTCCATTTCTTCATGGTGGGTTTCGCGCCGCTAACTT 930
||||||| || || ||||| || ||||| ||||||||||| ||||| || || | || |
Sbjct 890 TGAACCTTATTCCTTTCCCACGACTCCACTTCTTCATGGTTGGTTTTGCACCTTTGACAT 949
Query 931 CCCGTGGCTCACAACAATACATCT-CAC-TCACAGTCCCTGAGCTGACTCAACAAATGTG 988
| | || || |||||||||| | | | | | ||||||||||| |||||||| |||||
Sbjct 950 CAAGAGGATCTCAACAATACA-GTGC-CTTGAGTGTCCCTGAGCTAACTCAACAGATGTG 1007
Query 989 GGACT-CCAAAAACATGATGTGTGCAGCTGATCCACGTCACGGACGTTACCTCACAGCAT 1047
||| | |||||||||||||||||||||||||||| ||||| || |||||| | ||||| |
Sbjct 1008 GGA-TGCCAAAAACATGATGTGTGCAGCTGATCCTCGTCATGGTCGTTACTTGACAGCTT 1066
Query 1048 CGGCTATTTTCCGAGGACAGATGAGCACAAAAGAAGTCGATGAGCAAATCCTAAACATAC 1107
| ||| | ||||| ||| ||||||| || ||||| || ||||| || || | ||| | |
Sbjct 1067 CTGCTGTCTTCCGTGGAAAGATGAGTACCAAAGAGGTTGATGAACAGATGATGAACGTCC 1126
Query 1108 AGAACAAGAACTCGTCTTACTTCGTTGAGTGGATCCCAAACAATGTAAAATCCAGCGTTT 1167
||||||| ||||| || ||||| ||||| ||||| ||||| || || ||||| ||||| |
Sbjct 1127 AGAACAAAAACTCCTCATACTTTGTTGAATGGATTCCAAATAACGTGAAATCAAGCGTCT 1186
Query 1168 GTGATATCCCACCAAAGGGACTT-AAAATGGCGGCGACGTTTG-TGGGTAACTCGACGTC 1225
| ||||| | || | || || |||||||| | || ||| | || ||||| || ||
Sbjct 1187 GCGATATAGCTCCCACTGGT-TTGAAAATGGCATCAAC-TTTCATTGGAAACTCAACTTC 1244
Query 1226 GATCCAAGAAATGTTTAGGAGAGTGAGTGAGCAATTCACGGCTATGTTTAGGCGTAAAG- 1284
||||| |||||||| ||| | |||||||| || ||||| || ||||| ||| | ||||
Sbjct 1245 AATCCAGGAAATGTTCAGGCGTGTGAGTGAACAGTTCACTGCCATGTTCAGGAG-AAAGG 1303
Query 1285 CGTTTC-TGCATTGGTACACAGGAGAAGGAATGGATGAAATGGAGTTTACGGAAGCTGAG 1343
| |||| | |||||||||||||||||||||||||| || |||||||| || ||||| |||
Sbjct 1304 C-TTTCCTTCATTGGTACACAGGAGAAGGAATGGACGAGATGGAGTTCACTGAAGCAGAG 1362
Query 1344 AGCAATATGAATGAT-TTGGTCGCTGAATACCAACAGTACCAAGATGCTACTG-CTGATG 1401
|| || ||||||||| ||| | || || || || || || ||||||||||| | | | ||
Sbjct 1363 AGTAACATGAATGATCTTGTT-GCAGAGTATCAGCAATATCAAGATGCTACAGTCGG-TG 1420
Query 1402 AGGAAGGTGAGTATGAGGATGAAGAAGAAGAGGAGGAAGC 1441
| || || |||| ||||| || |||||||| || |||||
Sbjct 1421 AAGA-GG--AGTACGAGGAGGACGAAGAAGAAGAAGAAGC 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5