BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472227
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31400.1 | Symbols: CTF7 | damaged DNA binding;DNA-directed ... 545 2e-154
AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 368 5e-101
AT4G31398.1 | Symbols: | other RNA | chr4:15238584-15239282 RE... 268 5e-71
> AT4G31400.1 | Symbols: CTF7 | damaged DNA binding;DNA-directed
DNA polymerases | chr4:15237370-15239323 FORWARD LENGTH=1136
Length=1136
Score = 545 bits (295), Expect = 2e-154
Identities = 331/348 (95%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 586 TGTCGAGCATCAAATGATAGATTAGATTACGGAG-CGATTGTATGTGAAGAAGAAGCTAA 644
|||||| ||||| |||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 780 TGTCGAACATCAGATGATAGATTAGATAACGGAGTC-ATTGTATGTGAAGAAGAAGCTAA 838
Query 645 ACCAGATGTTTGTGGGATTAGAGCGATTTGGGCCTCACCTTCTAACAGAAGAAAAGGCAT 704
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 839 ACCAGCTGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAATAGAAGAAAAGGCAT 898
Query 705 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGA 958
Query 765 GAAATCTCAGTTAGCATTTTCACAACCAAGCACCATGGGAAGATCTTTTGGATCTAATTA 824
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 959 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATAGGAAGATCTTTTGGATCTAAATA 1018
Query 825 TTTTGGAACTTGTTCATTCTTAGTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 884
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTTTGGAACTTGTTCATTCTTACTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 1078
Query 885 A-CGGCATACATTTTATCACATCACAACCATCATCTTCACTGTTACTC 931
| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1079 AACGGCATAGGTTTCATCACATCACAACCATCATCTTCACTGTTACTC 1126
Score = 507 bits (274), Expect = 1e-142
Identities = 305/320 (95%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 86 CTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTATGAGCGTCGATCTGCGA-TA 144
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 130 CTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATCTGCGATTA 189
Query 145 CCCGATAGAAGTCAAGTGCTTAAGGGATGCATCGGGAAGCCGCTGAAGAAAGGATCTTCT 204
|||| |||||| |||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 190 -CCGAAAGAAGTGAAGTGCTTAAAGGATGCATCGAAAAGACGCTGAAGAAAGGATCTTCT 248
Query 205 TCTGTACCTAAAAATCTCAAAAAGAAGCGCAATTATACGCAATTCCACTTAGAGTTGGGC 264
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 249 TCTGTACCTAAAAATCACAAAAAGAAGCGTAATTATACACAATTCCACTTAGAGTTGGGC 308
Query 265 CAATCTGATTTTCTTCTCAGACATTGCGCACAATGTGGAGCTAAGTATGCTCCTGGAGAT 324
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 CAATCTGATTTTCTTCTCAGACATTGCGCAGAATGTGGAGCTAAGTATGCTCCTGGAGAT 368
Query 325 GAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGAATCCCTTTT 384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 GAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACTCCCTTTT 428
Query 385 AAGGGTTGGCAGAACGAGAA 404
||||||||||||||||||||
Sbjct 429 AAGGGTTGGCAGAACGAGAA 448
Score = 150 bits (81), Expect = 2e-35
Identities = 110/122 (90%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 401 AGAACCGCATCATTATGGTATCAGAAAATGATTCCCCTGCACACAG---GAA----C-A- 451
||||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 475 AGAACCGCATCGTTATGGTATCAGAAAATGATTCCCCTGCACACAGAAACAAGGTGCAAG 534
Query 452 AGGTTGTGAAAATGATGGAGGTTGAGTTAGGTGAGGATTGGATTCTTCACCAACATTGTA 511
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 535 AGGTTGTGAAAATGATGGAGGTTGAGTTGGGTGAGGATTGGATTCTTCACCAACATTGTA 594
Query 512 AG 513
||
Sbjct 595 AG 596
Score = 97.1 bits (52), Expect = 3e-19
Identities = 63/68 (93%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 1 AAACACAAACCTAAGAAAGATTCGAGCTCTCTCT-GTACGATGCAAGCCAAAATCAATTC 59
|||||||||| ||| || |||||||||||||||| | |||||||||||||||||||||||
Sbjct 3 AAACACAAACGTAACAAGGATTCGAGCTCTCTCTAG-ACGATGCAAGCCAAAATCAATTC 61
Query 60 TTTCTTCA 67
||||||||
Sbjct 62 TTTCTTCA 69
> AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr4:15161636-15164914
REVERSE LENGTH=2623
Length=2623
Score = 368 bits (199), Expect = 5e-101
Identities = 242/261 (93%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 673 TGGGCCTCACCTTCTAACAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 732
|||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2338 TGGGGCTCACCTTCTAATAGAAGAAAAGGCATAGCCACATGGTTACTCGATCCCAAGAGG 2397
Query 733 GAAAGCTTTTGCAACAATGGGTGCATGTTGGAGAAATCTCAGTTAGCATTTTCACAACCA 792
||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||
Sbjct 2398 GAAAGCTTTTGCAACAATGGGAGCA---T----AAA-CTCAGTTAGCATTTTCACAACCA 2449
Query 793 AGCACCATGGGAAGATCTTTTGGATCTAATTATTTTGGAACTTGTTCATTCTTAGTTTAC 852
||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 2450 AGCTCCATGGGAAGATCTTTTGGACCTAAATATTTTGGAACTTGTTCATTCTTACTTTAC 2509
Query 853 AAAGCTCAGCTAATTGATACTCACTTTTCTTAA-CGGCATACATTTTATCACATCACAAC 911
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 2510 AAAGCTCAGCTAATTGATACTCACTTTTCTTAAACGGCATACATTTCATCACATCACAAC 2569
Query 912 CATCATCTTCACTGTTACTCT 932
|||||||||||||||||||||
Sbjct 2570 CATCATCTTCACTGTTACTCT 2590
> AT4G31398.1 | Symbols: | other RNA | chr4:15238584-15239282
REVERSE LENGTH=578
Length=578
Score = 268 bits (145), Expect = 5e-71
Identities = 158/164 (96%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 730 AGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGAGAAATCTCAGTTAGCATTTTCACAA 789
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 172 AGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGAGAAATCTCAGTTAGCATTTTCACAA 113
Query 790 CCAAGCACCATGGGAAGATCTTTTGGATCTAATTATTTTGGAACTTGTTCATTCTTAGTT 849
|||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 112 CCAAGCTCCATAGGAAGATCTTTTGGATCTAAATATTTTGGAACTTGTTCATTCTTACTT 53
Query 850 TACAAAGCTCAGCTAATTGATACTCACTTTTCTTAA-CGGCATA 892
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 52 TACAAAGCTCAGCTAATTGATACTCACTTTTCTTAAACGGCATA 9
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 683 CTTCTAACAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 732
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTTCTAATAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5