BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472231
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20050.1 | Symbols: HYD1 | C-8,7 sterol isomerase | chr1:694... 1229 0.0
> AT1G20050.1 | Symbols: HYD1 | C-8,7 sterol isomerase | chr1:6949043-6950319
FORWARD LENGTH=973
Length=973
Score = 1229 bits (665), Expect = 0.0
Identities = 833/911 (91%), Gaps = 24/911 (3%)
Strand=Plus/Plus
Query 1 GGATCGAAGAGATTAGTAGTAAGCACATCATCAGCACTCAGATCTAGTAGAGAGTTCCAC 60
||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 10 GGATCGAGGAGATTAGTAGTAAGCACATCATCATCACTCAGATCTAGT----AGTTCCAC 65
Query 61 TAATTAACATTGGGCCATTGACCAG-AAAACACAGAGAGAGA-GaaaaaaaCCATGGAGG 118
|| | |||||||| | |||||||| |||||||| ||||| | || ||||| ||||||||
Sbjct 66 AAACTCACATTGGGTCGTTGACCAGAAAAACACACAGAGAAAGGAGAAAAA-CATGGAGG 124
Query 119 AATTGGCGCATCCGTACGTTCCGAGAGATCTGAAACTGCCGGGATACGTACCAATCTCCA 178
| |||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 125 AGTTGGCGCATCCGTACGTTCCGAGAGATCTGAACCTACCCGGATACGTACCAATCTCAA 184
Query 179 TGTCCATGTCCTCCATTGTCACTATCTACCTCGGTTCTTCCCTCCTTGTTGTCTTCCTCG 238
|||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 185 TGTCAATGTCCTCCATCGTCTCTATCTACCTCGGTTCTTCCCTCCTTGTTGTCTCCCTCG 244
Query 239 TCTGGCTTCTCTTCGGGAGGAAGAAATCTAAAGTTGAGAAATTGCTTATGTGTTGGTGGG 298
|||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||
Sbjct 245 TCTGGCTTCTCTTCGGGAGGAAGAAAGCTAAACTTGATAAGTTGCTTATGTGTTGGTGGA 304
Query 299 CATTCACTGGTCTCACTCACATCATCCTCGAAGGCTATTTCGTTTTCTCTCCTGAGTTTT 358
||||||||||||||||||| | || ||||| ||||||||||||||||| ||||||||||
Sbjct 305 CATTCACTGGTCTCACTCATGTTATTCTCGAGGGCTATTTCGTTTTCTCCCCTGAGTTTT 364
Query 359 TCAAGGACAACACTTCTTG-TTATCTCGCTGAAGTCTGGAAAGAATATAGCAAAGGTGAT 417
|||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||
Sbjct 365 TCAAGGACAACACTTC-TGCTTATCTTGCTGAAGTTTGGAAAGAATATAGCAAAGGTGAT 423
Query 418 TCGAGATACGCAGGTAGAGATTCTGCAGTTGTGTCTGTTGAAGGGATCACTGCTGTTATC 477
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 424 TCGAGATACGTAGGTAGAGATTCTGCAGTTGTATCTGTTGAAGGGATCACTGCTGTTATC 483
Query 478 GTAGGCCCTGCTTGTCTCCTAGCTATATATGCCATTGCTAAGGAGAAGTCGTATAGCTAC 537
|| ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 484 GTTGGCCCAGCTTCTCTCCTAGCTATTTATGCCATTGCTAAGGAGAAGTCGTATAGCTAC 543
Query 538 GTGCTTCAGCTTGTGATTTCGGTTGGCCAGCTCTACGGATGTTTGGTTTATTTCATTACT 597
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 GTGCTTCAGCTTGCGATTTCGGTTTGCCAGCTCTACGGATGTTTGGTTTATTTCATTACT 603
Query 598 GCTATCTTGGAAGGAGACAACTTTGCTACAAACTCTTTCTACTATTACTCCTACTACCTC 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 604 GCTATCTTGGAAGGAGACAACTTTGCCACAAACTCTTTCTACTATTACTCCTACTACATC 663
Query 658 GGGGCTAA-TGGATGGTGGGTCTTGATACCTTCACTCATTTCTTTCCGTTGCTGGAAAAA 716
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGGGCTAACT-GTTGGTGGGTCTTGATACCTTCACTCATTTCTTTCCGTTGCTGGAAAAA 722
Query 717 GATTTGTGCAGCTGC----A-----AACAACAACGTTGAGATTAAGACGAAGAAGAAAAC 767
||||||||||||||| | ||||||||||| |||| |||||||||||||||||
Sbjct 723 GATTTGTGCAGCTGCTGCCATTGCCAACAACAACGTCGAGACAAAGACGAAGAAGAAAAC 782
Query 768 CCGTTGAAGCAAGGATCAAAGAATCTTTTATCTCTTCAGGTCACTGCTATTATAGCAA-T 826
|||||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||| |
Sbjct 783 CCGTTGAACCAAGGATCAAAGACTCTTTTATCTCTTCAGGTTACTGCTGTTATAGCAAAT 842
Query 827 GAACATTTGTCACCTTTTGCGGATGATTTATCCATTTTAAAAACTTT-GACTATGTTGTC 885
|||||| ||| |||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 843 GAACATGAGTCTCCTTTTGCGGATAATTTATCCATTTTAAAAACTTTAG-CTATGTTGTC 901
Query 886 TGTCTCT-TTA 895
||||||| |||
Sbjct 902 TGTCTCTCTTA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5