BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472233
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20065.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 276 6e-74
> AT1G20065.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). | chr1:6956521-6957348
FORWARD LENGTH=349
Length=349
Score = 276 bits (149), Expect = 6e-74
Identities = 180/195 (92%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAATCTCGGGAAAGTGGGT-TCTTGTTCTGTAATTTGTGTGGGACGATGCTGGT 59
|||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||
Sbjct 74 ATGGAGAAATCTCGTGAAAGT-GATATCTTGTTCTGTAATTTGTGTGGGACAATGCTGGT 132
Query 60 CTTGAAATCAACCAAGTATGTAGAATGTCCACTCTGCGAAACAACGAGAAATGCCAAAGA 119
|||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||
Sbjct 133 CTTGAAATCAACCAAGTATGCAGAATGTCCACTATGCGAAACAACGCGAAATGGCAAAGA 192
Query 120 AATCATTGACAAGAATATATCATACACAGTTTCTGCTGAGGTATGTGTTTTCCTTTATTC 179
|||||||||||||||| || | ||||||||| || |||||||||||||||||||||| ||
Sbjct 193 AATCATTGACAAGAATTTAGCTTACACAGTTACTACTGAGGTATGTGTTTTCCTTTACTC 252
Query 180 AGCATTGTGGATTCT 194
|||||||||||||||
Sbjct 253 AGCATTGTGGATTCT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5