BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472235
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20090.1 | Symbols: ARAC4, ROP2, ATROP2, ATRAC4 | RHO-relate... 1240 0.0
AT1G75840.1 | Symbols: ARAC5, ATGP3, ROP4, ATROP4 | RAC-like GT... 806 0.0
> AT1G20090.1 | Symbols: ARAC4, ROP2, ATROP2, ATRAC4 | RHO-related
protein from plants 2 | chr1:6966922-6968933 FORWARD LENGTH=1219
Length=1219
Score = 1240 bits (671), Expect = 0.0
Identities = 856/938 (91%), Gaps = 41/938 (4%)
Strand=Plus/Plus
Query 182 ttttttgttt-ttt-CGATCTTGCGGCGGAGATGAGTGCGTCAAGGTTCATAAAGTGTGT 239
|||||||||| ||| |||||||||||| ||||| | ||||||||||| |||||||||||
Sbjct 271 TTTTTTGTTTGTTTCCGATCTTGCGGCAGAGAT--G-GCGTCAAGGTTTATAAAGTGTGT 327
Query 240 GACCGTCGGAGATGGTGCCGTCGGAAAAACCTGCATGCTGATTTCTTACACAAGCAATAC 299
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 328 GACCGTCGGAGATGGTGCCGTCGGAAAAACTTGCATGCTCATTTCTTACACTAGCAATAC 387
Query 300 TTTCCCTACAGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGA 359
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTTTCCTACTGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTGA 447
Query 360 TGGGAACACTGTCAATCTTGGATTGTGGGATACAGCAGGTCAAGAAGACTACAACAGGTT 419
||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 448 TGGCAACACTGTCAATCTTGGATTGTGGGATACTGCTGGTCAAGAGGACTACAACAGGTT 507
Query 420 ACGACCTCTGAGTTATCGTGGTGCCGATGTTTTCATTCTTGCTTTCTCTCTCATCAGCAA 479
||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 508 ACGACCTTTGAGTTACCGTGGTGCTGATGTTTTCATTCTTGCTTTCTCTCTTATTAGCAA 567
Query 480 GGCTAGCTATGAGAATATTGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGG 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGCTAGCTATGAGAATATAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCTGG 627
Query 540 TGTTCCCATTATCCTCG-TGGGAACAAAACTCGATCTTCGAGATGACAAGCAATTCTTCA 598
||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 628 TGTTCCCATTATCCTTGTTGGG-ACAAAACTCGATCTTCGAGATGACAAGCAATTCTTTA 686
Query 599 TTGATCATCCTGGTGCAGTGCCAATTACAACAAACCAGGGAGAGGAACTGAAGAAACTGA 658
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 687 TAGATCATCCTGGTGCTGTGCCAATTACTACAAACCAGGGAGAGGAACTGAAGAAACTGA 746
Query 659 TTGGATCTGCGGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TTGGATCTGCTGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTGT 806
Query 719 TTGATGCAGCCATAAAAGTGGTGCTTCAGCCACCAAAGCAGAAGAAGAAGAAAAAGAATA 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TTGATGCAGCTATAAAAGTGGTGCTTCAGCCACCAAAGCAGAAGAAGAAGAAAAAGAATA 866
Query 779 AGAACCGTTGCGCGTTCTTGTGATATGCAGAATCTCTAAG-CTAGGTAAA-CCAACTAAA 836
||||||||||||||||||||||||| | | || ||||||| ||||||||| |||||||||
Sbjct 867 AGAACCGTTGCGCGTTCTTGTGATAAGAAAAACCTCTAAGACTAGGTAAAACCAACTAAA 926
Query 837 GAAGAAGAAGAAGATGATGATTTCAACTATTTGATTCGTCCCCATTTTAATATGATAATT 896
||| | |||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 927 GAA-A-GAAGCAGAAGATGATTTCAACTATTTGATTCGGCCC-ATTTTAATATGATAATT 983
Query 897 -CGACGGGAAGGGAGACATCTCGAGTAGCtttttt-t---GTTG-T---------T--GT 939
||||| |||||||||||| || |||||||||||| | |||| | | ||
Sbjct 984 TCGACGTGAAGGGAGACATTTCTAGTAGCTTTTTTGTATAGTTGCTAAAACGAGCTTTGT 1043
Query 940 -GT--------CTTTTACTCTTTGCTGGTGAATCTTTTGAGTTCACAGAGTAAGAGACCG 990
|| |||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct 1044 TGTTGTTGTGTCTTTTACTCTTTGCTGGTGAATCTTTCGAGTCCACAGACTAAGAGACCG 1103
Query 991 TGTGTTCTACTCTTGCTATGTAGACTAATCTGTCTCTCTCTTCTCTTTTGTTCTTGATGG 1050
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 1104 TGTGTTGTACTCTTGCTATGTAGACTAATCTCTGTCTCTCTTCTCTTTTGTTCTTGA-GG 1162
Query 1051 GGATCAATTTGTATTAACAAATGAATCTAATTAATATT 1088
|||| |||||||||||||||||||||||||||||||
Sbjct 1163 --ATCATTTTGTATTAACAAATGAATCTAATTAATATT 1198
Score = 115 bits (62), Expect = 8e-25
Identities = 101/118 (86%), Gaps = 9/118 (8%)
Strand=Plus/Plus
Query 1 TGTTCTCTTAGCTGTCTCAGAGTTGTTGTTGTTAT--T-GTC---TACTCCTATAGGCTC 54
|||||||||||||||||||||||||||||| || | | ||| | |||||||||||||
Sbjct 23 TGTTCTCTTAGCTGTCTCAGAGTTGTTGTTTTTCTACTAGTCCCCTCCTCCTATAGGCTC 82
Query 55 CCTCTCAAAGTCATCAATCAACCGCCAATTTAACCTCCTCcttcttcttcttc-ttct 111
| ||||||||||||| |||||||||||| | ||||| || ||||||||| ||| ||||
Sbjct 83 C-TCTCAAAGTCATCTATCAACCGCCAAATCAACCTTCTTCTTCTTCTT-TTCCTTCT 138
> AT1G75840.1 | Symbols: ARAC5, ATGP3, ROP4, ATROP4 | RAC-like
GTP binding protein 5 | chr1:28475707-28477802 FORWARD LENGTH=1273
Length=1273
Score = 806 bits (436), Expect = 0.0
Identities = 564/626 (90%), Gaps = 8/626 (1%)
Strand=Plus/Plus
Query 181 tttttttg-ttttttCG-ATCTTGCGGCGGAGATGAGTGCGTCAAGGTTCATAAAGTGTG 238
|||||||| ||| | | || |||| |||||||||||||| || ||||| ||||||||||
Sbjct 228 TTTTTTTGAGTTTGT-GAAT-TTGCTGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTG 285
Query 239 TGACCGTCGGAGATGGTGCCGTCGGAAAAACCTGCATGCTGATTTCTTACACAAGCAATA 298
| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 286 TCACCGTCGGCGATGGTGCCGTCGGAAAAACTTGTATGCTGATTTCTTACACAAGCAACA 345
Query 299 CTTTCCCTACAGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTG 358
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 346 CTTTCCCTACGGACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAG 405
Query 359 ATGGGAACACTGTCAATCTTGGATTGTGGGATACAGCAGGTCAAGAAGACTACAACAGGT 418
|||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 406 ATGGGAACACGGTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGT 465
Query 419 TACGACC-TCTGAGTTATCGTGGTGCCGATGTTTTCATTCTTGCTTTCTCTCTCATCAGC 477
|| |||| | ||||||| |||||||||||||| ||||||||||| ||||| || || |||
Sbjct 466 TAAGACCGT-TGAGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCGCTTATTAGC 524
Query 478 AAGGCTAGCTATGAGAATATTGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCT 537
|| |||||||| |||||| | ||||||||||||||||||||||| ||||||||||| |||
Sbjct 525 AAAGCTAGCTACGAGAATGTAGCCAAGAAGTGGATTCCTGAGCTTAGGCATTATGCCCCT 584
Query 538 GGTGTTCCCATTATCCTCGTGGGAACAAAACTCGATCTTCGAGATGACAAGCAATTCTTC 597
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 585 GGTGTTCCTATAATCCTCGTTGGAACGAAACTCGATCTTCGAGATGACAAGCAATTCTTC 644
Query 598 ATTGATCATCCTGGTGCAGTGCCAATTACAACAAACCAGGGAGAGGAACTGAAGAAACTG 657
|| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 645 ATAGACCATCCTGGTGCAGTGCCTATTACTACAAACCAGGGAGAGGAACTAAAGAAACTG 704
Query 658 ATTGGATCTGCGGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTG 717
|| ||||| | ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 705 ATAGGATCACCAATCTACATTGAATGTAGTTCAAAGACTCAGCAGAATGTGAAAGCAGTC 764
Query 718 TTTGATGCAGCCATAAAAGTGGTGCTTCAGCCACC-AAAGCAGAAGAAGAAGAAAAAGAA 776
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 765 TTTGACGCAGCCATAAAAGTGGTGCTTCAGCCACCGAAA-CAGAAGAAGAAGAAAAAGAA 823
Query 777 TAAGAACCGTTGCGCGTTCTTGTGAT 802
|||||||| |||| |||||||||||
Sbjct 824 CAAGAACCGCTGCGTGTTCTTGTGAT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5