BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472236
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1502 0.0
> AT1G20100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G75860.1);
Has 471 Blast hits to 438 proteins in 92 species: Archae -
0; Bacteria - 14; Metazoa - 217; Fungi - 43; Plants - 91; Viruses
- 1; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:6969107-6970956
REVERSE LENGTH=1322
Length=1322
Score = 1502 bits (813), Expect = 0.0
Identities = 1184/1351 (88%), Gaps = 73/1351 (5%)
Strand=Plus/Plus
Query 1 TCAACCGCAATTGGTTTTAttcttcttcttcttcttctctctc-tc---t--c---ATCG 51
|||||||||||||||||| |||||| | ||| || |||||||| || | | ||||
Sbjct 1 TCAACCGCAATTGGTTTTTTTCTTC-T-TTC-TC-TCTCTCTCATCGATTAACAAAATCG 56
Query 52 TTTAGaaaaaaaaaaTTAGGGTTATCTTCTTCTC-TCCGTCTATAGCTATCGATTTCGAT 110
| ||||||||||||||||| | ||||| |||| ||||||| | | ||||||||||| |
Sbjct 57 AATCGAAAAAAAAAATTAGGG-T-TCTTC-TCTCTTCCGTCTCTCGTTATCGATTTCGTT 113
Query 111 TTGATTTCGCGCCACAAAGAAGAAGGTTT-ATTAGGCGCGAATCTGAAACCTAGGTTCGA 169
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 114 TTGATTTCGCGCCACAAAGAAGAA-GTTTCATTAGGCGCGAATCTGAAACCTAGGTTCGA 172
Query 170 -TTAGTCCTGTCCGAATTTACTGTCCGTTGTCTTGTCCGTTAATCGATTCGATCTGAGAA 228
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 173 TTTAGTTCTGTCCGAA-TTACTGTCCGTTGTCTTGTCCGTTAGTCGATTCGATCTGAGAA 231
Query 229 AGAAAG--AGAG-A-AACAAAAAACGATGTCGCGTTATTTCACATCTCCACCGCCTGTGT 284
|||||| |||| | || ||||||||||||| || ||||||||||| |||||||||||||
Sbjct 232 AGAAAGAAAGAGAAGAAGAAAAAACGATGTCACGATATTTCACATCCCCACCGCCTGTGT 291
Query 285 ATGCGAGGAACTGGGCGAACGGTCAGAACTTGGTCGAATCGACTAAGATCGAAAGACAAA 344
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 292 ATGCGAGGAACTGGGCGAACGGTCAAAACTTGGTCGAATGGACTAAGATCGAAAGACCAA 351
Query 345 TAGTCGATTCTaaaaaggtgcatcggaaagagaagaa-g-g----ag--a-aaaagaaat 395
|||| |||||||||||| ||||||||||||||||||| | | || | |||||||||
Sbjct 352 TAGTTGATTCTAAAAAGCTGCATCGGAAAGAGAAGAAGGAGAAAAAGAAAGAAAAGAAAT 411
Query 396 taaagaaagagaaggaaTCTCTTGAACAGCAGTATTCCCCAACCAAGACAGTCTC-TGAT 454
|||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| | ||
Sbjct 412 TAAAGAAAGAGAAGAAATCCCTTGAACAGAAGTATTCCACAACCAAGACAGTCTCAT-AT 470
Query 455 GAATCAGAACAGCTTGAGAAGA-GTTGTTTGACGGAAGAACCTGAGCTACTTCACTCTGT 513
||||| |||||||||||||| | |||||| || |||||| ||||| || ||| ||
Sbjct 471 GAATCCGAACAGCTTGAGAA-ATCTTGTTTAACAGAAGAATTTGAGCAACCTCA---GGT 526
Query 514 TGGTTATTTGTCTGATGGTAGCCAGAACAGTAAGAAGAGAAGAAGGGAAACTTCTCCTGC 573
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TGGATATTTGTCTGATGGTAGCCAGAACAGTAAGAAGAGAAGAAGGGAAACTTCTCCTGC 586
Query 574 TGTTGTTGAGAGTCAAATCAAAGCTACACCTGTAGCTGGTAAACCACTACGGATTCGTTT 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 587 TGTTGTTGAGAGTCAAATCAAAGCTACACCTGTAGCTGGTAAACCACTACGGATTCGTAT 646
Query 634 TGTCTTCAAGAAACCGAAAGAGGTTTCTGAGGTTGTACCTCAAGAAGAGGATCGTGTTTG 693
||| ||||||||||||||||| | |||| | |||||||||||| | | ||| ||||||
Sbjct 647 TGTTTTCAAGAAACCGAAAGAAG---CTGAAGCTGTACCTCAAGA-G-G-ATCCTGTTTG 700
Query 694 TTCCACTTCAGGGACTGAGAGACCCAGCGAAATACCAAGTTCTGTCTCTCTTCCAAAG-A 752
|||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 701 TTCCACTTCAGGGACTCAGAGACCTAGCGAATTACCAAGTTCTGTCTCTCTTCCAA-GTA 759
Query 753 -CATGTGGTCATGATGAGAATATACTCTCATCTTCTCTTGAGAGTGACAAGATTGCAATT 811
| |||| |||||||| | | ||| |||| ||||||||||||||| |||| | ||||||
Sbjct 760 TC-TGTGATCATGATGTGGCTGTACCCTCAACTTCTCTTGAGAGTGGCAAGGTAGCAATT 818
Query 812 CTTTCTGAATCAAAGAAGAGGAAGAAACATAAGCCAAGCAGAGAATCTCGGTACAATTCA 871
|||| |||||||||||||| |||||||||||||| |||| |||||| ||||||||||||
Sbjct 819 ATTTCCGAATCAAAGAAGAGAAAGAAACATAAGCCTAGCAAAGAATCCCGGTACAATTCA 878
Query 872 TTGTTTGATGAATGGGTTCCTCCTTGCAATTCGTTGGAGGAAGATGATAGCAACAGTGAT 931
||||||||||||| |||||||| || | ||| ||||||||||||||||||| ||| |||
Sbjct 879 TTGTTTGATGAATTAGTTCCTCCCTGTATTTCCTTGGAGGAAGATGATAGCAGCAGCGAT 938
Query 932 GACTGGCTTTTTGGAACAAGTCGGAAAGATAATGCTTCTTCAACCAAGTCTTCTAATAAG 991
||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||
Sbjct 939 GACTGGCTTTTTGGAACAAGTCGGAAAGAAAATGTTTCTTCTGCCAAGTCTTCTTATAAG 998
Query 992 ACTGATGAAGACATGATCATGAGCTTGCAGACTTCA-GCGGATTGTTCCTCTTAT-CCTA 1049
||||||||||||| |||||||||||||||||| ||| | | |||||||||||| | ||||
Sbjct 999 ACTGATGAAGACACGATCATGAGCTTGCAGACGTCAAGAG-ATTGTTCCTCTT-TGCCTA 1056
Query 1050 GAGCTCTGTTATTGTCTGAAGTCGGAATTTTTTCATTACCATATACAGTCCCGTTTTAGG 1109
||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1057 GAGCTATGTTATTGTCTGAAGTTGGAATTTTTTCATTACCATATACTGTCCCGTTTTAGG 1116
Query 1110 TCCCATATTGTTTTGTTCTTTCTCAACGTAGCCTTAGTCCTTAGCTT---A---TT---- 1159
||||||||||||||||||||||||| | ||||||||| ||||||||| | ||
Sbjct 1117 TCCCATATTGTTTTGTTCTTTCTCAGCTTAGCCTTAGGCCTTAGCTTTGTACAGTTATCA 1176
Query 1160 --GTAACAATCACAGTGATCTATAATACTTGTTGTATGATCTCTGTATTTTTGAC-CTTA 1216
||||||||||||||||||||| ||||||| | |||||||||||||||||| || |
Sbjct 1177 TTGTAACAATCACAGTGATCTATGATACTTGA---ACGATCTCTGTATTTTTGACACT-A 1232
Query 1217 ATCATAAATTATGGTTTCCACGTACTAAATTATCTTCTTCATGAATTTTGGCAATTGAAA 1276
|||| |||| ||||||||||| ||||||| |||| ||| ||||| ||||| ||| || ||
Sbjct 1233 ATCAAAAATCATGGTTTCCACTTACTAAACTATCGTCTACATGATTTTTGTCAACTGGAA 1292
Query 1277 GCTTTTGTGTTGAATTGATCAATGCGATTGC 1307
| ||||| |||||||||||||||||||||||
Sbjct 1293 GTTTTTG-GTTGAATTGATCAATGCGATTGC 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5