BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472247
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20180.1 | Symbols: | Protein of unknown function (DUF677) ... 2130 0.0
> AT1G20180.1 | Symbols: | Protein of unknown function (DUF677)
| chr1:6996210-6997943 FORWARD LENGTH=1481
Length=1481
Score = 2130 bits (1153), Expect = 0.0
Identities = 1343/1433 (94%), Gaps = 19/1433 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCTATCTTTGTCTAACCAATCAACATAAAGACTTATGTATATAAAGAAACAAGAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 35 CTCTCTCTATCTTTGTCTAACCAATCAACAAAAAGACTTATGTATATAAAGAAACAAGAA 94
Query 61 GCTTGTCTATTATTCACCTGAATCGCTTTTGTTTTCTAAGTTCCATTGAAAATGTTGAAA 120
|| |||||||||||||||| |||||| | | | || | |||||||| ||| |||||||||
Sbjct 95 GCCTGTCTATTATTCACCTAAATCGCCTCTCTCTT-TGAGTTCCATCGAAGATGTTGAAA 153
Query 121 GTGAAGAATTTTCTTGGTTCTAGATTAAAGTCTTTCCCTACAAGAAAAGGAAAGTCCGAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 GTGAAGAATTTTCTTGGTTCTAGATTAAAGTCTTTCCCTACAAGAAAAGGAAAGTCCGAC 213
Query 181 AAGGAATGTTGTCGTAGCTTGACGTCGAAGCTAAGTGTTAATGAAGAGTACAAGGAAGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AAGGAATGTTGTCGTAGCTTGACGTCGAAGCTAAGTGTTAATGAAGAGTACAAGGAAGCA 273
Query 241 TTCAGAACAAACTCCTACTTAGAGATTCGGACAAAAGCAGAAGATCAATTAGGCATAACA 300
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 274 TTTAGAACAAACTCCTACTTAGAGACTCGGACAAAAGCAGAAGATCAATTAGGCATAACA 333
Query 301 ACATCATGTAGCAAACTCTC--CT-C--CTC-TTCTCCTTCATCTTCTTCAGATCTTAGC 354
||||||||||||||||| || | ||| ||||||||| || |||||||||||||||
Sbjct 334 ---TCATGTAGCAAACTCTCTTCTTCTTCTCCTTCTCCTTCTTCATCTTCAGATCTTAGC 390
Query 355 TTCCATTCACACTTCAGCAATTAGTTG-TTCTACCCTCCTCAAGAAACTCTAGATGCTCT 413
|||||||||||||||| | |||| ||| || ||||||| |||||||| || ||||| ||
Sbjct 391 TTCCATTCACACTTCACCGATTACTTGCTTG-ACCCTCCACAAGAAACACTTGATGCCCT 449
Query 414 GATGCAAGACTCGA-TTATCGACAATCTTCTAGTTAATTTTTTCGACTTTAGCTCCGAAG 472
|||||||||||||| || | ||||||||| |||||| ||||||||||| ||||||||||
Sbjct 450 GATGCAAGACTCGAGTT-TAGACAATCTTATAGTTACGTTTTTCGACTTGAGCTCCGAAG 508
Query 473 CTTGTGACGTGTGTGAGACTCTTCTTCAATGCATCCAACAAATCAAGATCAATCACAACA 532
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 509 CTTGTGACGTGTGTGAGACTCTTCTTCAGTGCCTCCAACAAATCAAGATTAATCACAACA 568
Query 533 AAATCAAAAGGGTTATCACGATTGGGAAAAGGGTTTGTAACGGTGCTAAAACCTTGGAAT 592
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AAATCAAAAGGGTTATGAAGATTGGGAAAAGGGTTTGTAACGGTGCTAAAACCTTGGAAT 628
Query 593 GTGGCCCCGAAAAGCTTTGTGCTTTGATATTTCAAGAGCTTTCGAGATTTGCCGCACTGA 652
|| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 629 GTAGCCCCGAGATGCTCTGTGCTTTGATATTTCAAGAACTTTCGAGATTTGCCGCGCTGA 688
Query 653 AGAACCCTCTGTGTTGTATCATCAATGAAGCTCAGTTTCGTGTAGTTCACGATGCAAACT 712
| |||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 689 AAAACCCTTTGTGTCGTATCGTCAATGAAGCACAGTTTCGTATAGTTCACGATGCAAACT 748
Query 713 CGGATTTGCTCACCAAGTTGACATC-AAAAAGGAGAAGAATCAGAAGAAAAATCAGGTTC 771
|||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 749 CGGATTTGCTCACCAAACTGACATCGAAAAAG-AGAAGAATAAGAAGAAAAATCAGGTTC 807
Query 772 TTTAGATTCTGCAAGAAGCTAGGAGGTTATAGCCTAGTGATTACTCATAGCGCGATTGTC 831
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TTTAAATTCTGCAAGAAGCTAGGAGGTTATAGCCTAGTGATTACTCATAGCGCGATTGTC 867
Query 832 ATTACATTGCTTATCATAGCTCTTCACAGCATAATCGGCGTTTTAGCAGCTCCTGCGTTG 891
||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 868 ATTACATTGCTGATCATAGCTCTTCACAGCATACTCGGCGTTTTCGCAGCTCCTGCGTTG 927
Query 892 CTCGGTCTATGTTCATTGGGTCTTTTGAGGAAGAAGAAAGCGAAAGGAAGAATGCATAAG 951
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CTCGGTCTATGTTCGTTCTGTCTTTTGAGGAAGAAGAAAGCGAAAGGAAGAATGCATAAG 987
Query 952 AGCAAGACAGATACAACTCTAGAGAAGCTCGGGACACAAATCGACATTGCAGCTAAAGGA 1011
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AGCAATAAAGATACAACTCTAGAGAAGCTCGGGACACAAATCGACATTGCAGCTAAAGGA 1047
Query 1012 ATGTTCATATTGATGAAA-GATTTGGATACATTGAGTAGACTTTCCGGGAGATTATGCGA 1070
|||||||||||||| ||| ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 1048 ATGTTCATATTGAT-AAACGATTTGGATACGTTGAGTAGACTTGCTGGGAGATTATGCGA 1106
Query 1071 TGAGATAGAGCATAGAAAAACCGTAGCTGCGATGTGCGCAAAGAGTAGGAAGATTGAAGT 1130
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TGAGATAGAGCATAGAAAAACAGTAGCTGCGATGTGCGCAAAGAGTAGGAAGATTGAAGT 1166
Query 1131 GTTAAAGGAAGCATTGAGAGAGTTTAATGGACATGAAGAAAAATTCTCAGATCAATTGCA 1190
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 GTTAAAGGAAGCATTGAGGGAGTTTAATGGACATGAAGAAAAATTCTCAGATCAATTGCA 1226
Query 1191 AGAGCTTGAAGAACACCTCTACCTCTGTTTCCACACTATTAACAGATCAAGAAGGCTAGT 1250
||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1227 AGAGCTTGAAGAACATCTCTATCTATGTTTCCACACTATTAACCGATCAAGAAGGCTAGT 1286
Query 1251 GTTAGCGCAAATCACAGGACAAAGTTCTTGAATCTTGAATCTTTAATTCTTTTGGTTCAT 1310
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1287 GTTAGCGCAAATCACAGGACAAAGTTCTTGAATCTTGA-TCTTTCATTCTTTTGGTTCAT 1345
Query 1311 CAAAATAATAAATACTTTTGTAGGGTTTATAAACTACTTATTATAATAAATCTGTAAGAA 1370
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1346 CAAAATAACAAATACTTTTGTAGGGTTTATAAACTACTTATTGTAATAAATCTGTAAGAA 1405
Query 1371 TATCTTTCAAAGTTTTCTTTATGTTTCAAGTGAAACTGAGGCCATGAAAGTAA 1423
||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1406 TATCTTTAAAAGTTTTCTTTATGTTTCAAGTGAAACTGAGGCCATGGAAGTAA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70130161365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5