BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472250
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20200.1 | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT as... 2536 0.0
AT1G75990.1 | Symbols: | PAM domain (PCI/PINT associated modul... 1190 0.0
> AT1G20200.1 | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT
associated module) protein | chr1:7001201-7004418 REVERSE LENGTH=1804
Length=1804
Score = 2536 bits (1373), Expect = 0.0
Identities = 1655/1791 (92%), Gaps = 20/1791 (1%)
Strand=Plus/Plus
Query 1 AAAAAGAAAAATACTTAGGAAAGAAAAGAGTCTTAGCAGCATCAGCTCGACCTCAAATCT 60
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1 AAAAAGGAAAATACTTAGGAAAGAAAAGAGTCTCAGCAGCATCAGCTCGTCCTTAAATCT 60
Query 61 GATCCACCATCGTCACTTTCTCTCCCGGCGAATTCCGTCTTGTCGATTTAAGTAACGAGA 120
|||||| ||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GATCCATCATCGTCAC-TT-TCTCCCGGCGAATTCCGTTTTATCGATTTAAGTAACGAGA 118
Query 121 TTTGAGC-AAGATGACTCAGGATGTAGAGATGAAAGATAACAATACTCCTTCTCAATCGG 179
|||| || |||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 119 TTTGTGCAAAGATGACTCAGGACGTGGAGATGAAAGATAACAACACCCCTTCTCAATCGA 178
Query 180 TCATCTCTTCTTCTACCTCCACGATGCAGCATTTGAAGGAGATTGCAACACTGATCGATA 239
| ||||||||||||||||| || |||||| ||||||||||||||||| |||| |||||||
Sbjct 179 TTATCTCTTCTTCTACCTCTACTATGCAGAATTTGAAGGAGATTGCAGCACTCATCGATA 238
Query 240 CTGGGTCTTATACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTCCGTCTTACTATAGGGC 299
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 239 CTGGGTCTTACACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTGCGTCTCACTATAGGGC 298
Query 300 TTAGGC-GTAAGCTCACCGGCTCTGTGCTCTCTTCGTTCCTGGATTTTGCTTTGGTTCCA 358
|||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TTAGGCAG-AAACTCACCGGCTCTGTGCTCTCTTCCTTCCTGGATTTTGCTTTGGTTCCA 357
Query 359 GGATCCGAAGCTCACTCTCGCCTTTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATG 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 GGATCCGAAGCTCACTCTCGCCTCTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATG 417
Query 419 GAAGTTGATACAGCTTCATCGGCTACGCAAGCTCCTCCTTCTAAGCATCTTCCTGCAGAG 478
||||||||||| || |||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 418 GAAGTTGATACTGCCTCATCGGCCACACAAGCTGCTCCTTCTAAGCATCTACCTGCAGAG 477
Query 479 CTCGAGATTTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAAAAGTACAAC 538
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 CTCGAGATCTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAGAAGTACAAC 537
Query 539 GAGGCTAAAGCTTGTTCGTCAGCAAGCATTGCTCGTCTCAAGAACGTTAACCGAAGGACC 598
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 GAGGCTAAAGCTTGTTCTTCAGCAAGCATTGCTCGTCTCAAGAACGTCAACCGAAGGACC 597
Query 599 ATTGATGTGATAGCATCCAGACTCTACTTTTACTATTCCTTGAGTTACGAGCAAACCGGT 658
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 598 ATTGATGTGATAGCATCAAGACTCTACTTTTACTATTCTTTGAGTTATGAGCAAACCGGT 657
Query 659 GATCTTGCTGAAATTCGCGGTACTCTTCTTGCGTTGCATCATTCTGCAACGTTAAGACAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 GATCTTGCTGAAATTCGCGGTACTCTTCTTGCGTTGCATCATTCTGCAACGCTAAGACAC 717
Query 719 GATGAATTGGGGCAGGAAACTCTTCTGAACTTGTTACTACGTAACTATCTT-CATTACAA 777
||||| |||| |||||||| ||||||||| |||| |||||||||||| || ||||||||
Sbjct 718 GATGAGCTGGGTCAGGAAACCCTTCTGAACCTGTTGCTACGTAACTAT-TTGCATTACAA 776
Query 778 CTTATATGATCAGGCGGAGAAGCTACGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAA 837
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 CCTCTATGATCAGGCAGAGAAGCTAAGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAA 836
Query 838 CCAACAGTTTTGTAGGTATCTGTTCTACCTCGGGAAGATTCGTACGATTCAGCTTGAGTA 897
|||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||
Sbjct 837 CCAACAGTTTTGTAGGTACCTTTTCTATCTCGGGAAGATTCGTACTATTCAGCTCGAATA 896
Query 898 TACTGATGCGAAAGAGAGCCTCCTTCAGGCTGCCAGGAAAGCCCCTATTGCTGCTTTGGG 957
||| || || ||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 897 TACGGACGCAAAAGAGAGCCTTCTTCAGGCGGCCAGGAAAGCCCCTATAGCAGCTTTGGG 956
Query 958 CTTCAGAATTCAATGTAATAAATGGGCAATTCTGGTTCGTCTGCTACTGGGTGAAATACC 1017
|||||| || ||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 957 CTTCAGGATCCAATGCAATAAATGGGCAATTCTGGTTCGTCTACTGCTGGGTGAGATACC 1016
Query 1018 AGAACGGTCGATCTTCACTCAAAAGGGAATGGAGAAAGCCCTCAGGCCTTACTTTGAGCT 1077
||| || || ||||||||||||||||| |||||||| |||||||| || ||||| |||||
Sbjct 1017 AGAGCGTTCTATCTTCACTCAAAAGGGTATGGAGAAGGCCCTCAGACCCTACTTCGAGCT 1076
Query 1078 TACCAATGCGGTTAGGATTGGTGACTTGGAGCTGTTTAGGACAGTACAGGAGAAGTTCTT 1137
|| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1077 AACAAATGCGGTTAGGATTGGGGACTTGGAGTTGTTTAGGACAGTCCAGGAGAAGTTCTT 1136
Query 1138 GGACACATTTTCTCAAGACAGAACGCACAATCTCATCGTGAGACTCCGCCACAATGTCAT 1197
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 GGACACATTTGCTCAAGACAGAACGCACAATCTCATCGTGCGACTCCGCCACAATGTCAT 1196
Query 1198 CAGGACTGGATTGCGCAACATAAGCATCTCATACTCGAGAATCTCTTTACCCGATGTTGC 1257
|||||||||| |||| |||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1197 CAGGACTGGACTGCGGAACATAAGTATCTCCTACTCAAGAATCTCTTTACCCGATGTTGC 1256
Query 1258 CAAAAAGCTGAGGCTCAACTCCGAAAACCCTGTGGCTGATGCGGAAAGCATCGTGGCAAA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CAAAAAGCTGAGGCTCAACTCTGAAAACCCTGTGGCTGATGCGGAAAGCATCGTGGCAAA 1316
Query 1318 GGCCATTCGTGATGGAGCGATTGATGCGACCATCGATCACAAAAACGGATGGATGGTCTC 1377
|||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1317 GGCCATACGCGACGGAGCTATTGATGCTACAATCGATCACAAAAACGGATGCATGGTCTC 1376
Query 1378 CAAAGAAACAGGGGACATCTACTCAACGAACGAGCCACAAACTGCATTCAACTCAAGAAT 1437
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1377 CAAAGAAACTGGGGACATCTACTCGACGAATGAGCCACAAACTGCGTTCAACTCAAGAAT 1436
Query 1438 TGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTCCTAACAC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTCCTAACAC 1496
Query 1498 TCACaaggagaaagagagcgatgagaagaggagagagagaaagcaacaagaagaagagCT 1557
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1497 TCACAAGGAGAAAGAAAGCGATGAGAAGAGGAGAGAGAGGAAGCAACAGGAAGAAGAGCT 1556
Query 1558 TGCTAAGCATATGGCCGAGGAAGACGATGATGATTTTTAGACAAAGGTAATCTCTTTCTG 1617
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1557 TGCTAAGCATATGGCTGAGGAAGACGATGATGATTTTTAGACAAAGGTCATCTATTTCTT 1616
Query 1618 ATA-GAGTTTActctc--tct--ctc--tTTTTCT--GTTCACAAGTTTACTTTGTACTC 1668
||| ||||| |||||| ||| ||| ||||| | |||||||||||||||| ||||||
Sbjct 1617 ATAAGAGTTGACTCTCCATCTGTCTCACTTTTTTTATGTTCACAAGTTTACTTGGTACTC 1676
Query 1669 TGCTCATCGT-TCTAAGTGTTT-T--ATTGAGGATTTTTATCCTCCGGAACCTTTTTATT 1724
| |||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1677 TTCTCATCGTCTCTAAGTGTTTCTTTATTGAGGATTTTTATCCTCAGGAACCTTTTTATT 1736
Query 1725 ACTTTGGTTTCACTTTAGGAAAAGAGATTTATATTGTTGGTTTCAGAAGAT 1775
||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1737 ACTCTGGTTTCACTTTAGGAAAAGATATTTATCTTGTTGGTTTCAGAAGAT 1787
> AT1G75990.1 | Symbols: | PAM domain (PCI/PINT associated module)
protein | chr1:28524493-28526776 REVERSE LENGTH=1652
Length=1652
Score = 1190 bits (644), Expect = 0.0
Identities = 1214/1489 (82%), Gaps = 39/1489 (3%)
Strand=Plus/Plus
Query 128 AAGATGACTCAGGATGTAGAGATGAAAGATAA-CAATACTCCTTCTCAATCGGTCATCTC 186
|||||||||||||| ||||||||||||||||| ||| || || | ||||| ||| ||||
Sbjct 56 AAGATGACTCAGGACGTAGAGATGAAAGATAACCAA-ACCCCAACGCAATCCGTCGTCTC 114
Query 187 TTCTTCTACCTCCACGATGCAGCATTTGAAGGAGATTGCAACACTGATCGATACTGGGTC 246
| || ||||||||||| | ||| ||||||||||||||||| | ||||| |||||||| ||
Sbjct 115 TGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACTGGATC 174
Query 247 TTATACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTCCGTCTTACTATAGGGCTTA-GGC 305
|||||| ||||| || |||||||||||||||||||| ||||| || | || | || |
Sbjct 175 TTATACAAAGGAAGTCCGTCGTATTGCTCGTGCTGTGCGTCTCACCGTTGGAC-TACGAA 233
Query 306 GTAAGCTCACCGGCTCTGTGCTCTCTTCGTTCCTGGATTTTGCTTTGGTTCCAGGATCCG 365
| |||||||| || || ||| ||||||| ||||| ||||| ||||||||||| ||||| |
Sbjct 234 GGAAGCTCACGGGTTCCGTGATCTCTTCTTTCCTTGATTTCGCTTTGGTTCCTGGATCTG 293
Query 366 AAGCTCACTCTCGCCTTTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATGGAAGTTG 425
|||||||| |||| || ||||| ||||| || ||| ||||||||||||||||||||||||
Sbjct 294 AAGCTCACACTCGTCTCTCTTCTTTTGTGCCGAAGAGTGATGAACATGACATGGAAGTTG 353
Query 426 ATACAGCTTCATCGGCTACGCAAGCTCCTCCTTCTAAGCATCTTCCTGCAGAGCTCGAGA 485
||||||| |||||| | | ||||||||| | |||||||||| ||||||||||||||||
Sbjct 354 ATACAGCATCATCGAATTCCCAAGCTCCT-C--CTAAGCATCTACCTGCAGAGCTCGAGA 410
Query 486 TTTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAAAAGTACAACGAGGCTA 545
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 411 TTTACTGCTACTTCATTGTTCTTCTTTTTCTCATTGATCAGAAAAAGTACAACGAGGCCA 470
Query 546 AAGCTTGTTCGT-CAGCAAGCATTGCTCGTCTCAAGAA-CGTTAACCGAAGGACCATTGA 603
||| |||||| | | || ||||||||||| ||||| || ||| ||| | || ||| ||||
Sbjct 471 AAGTTTGTTC-TACCGCTAGCATTGCTCGCCTCAA-AAGCGTAAACAGGAGAACCGTTGA 528
Query 604 TGTGATAGCATCCAGACTCTACTTTTACTATTCCTTGAGTTACGAGCAAACCGGTGATCT 663
||| || || |||| | | || |||||||| ||||| |||||||||| ||| ||||||
Sbjct 529 TGTCATTGCTTCCAAATTGTATTTTTACTACTCCTTAAGTTACGAGCTAACTAATGATCT 588
Query 664 TGCTGAAATTCGCGGTACTCTTCTTGCG-TTGCATCATTCTGCAACGTTAAGACATGATG 722
||| || || || ||||||||||||| || || ||||| || || | | || || |
Sbjct 589 TGCAGAGATACGTAGTACTCTTCTTGCTCTT-CACCATTCGGCCACACTGCGCCACGACG 647
Query 723 AATTGGGGCAGGAAACTCTTCTGAA-CTTGTTACTACGTAACTATCTTCATTACAACTTA 781
||||||| |||||||| ||| |||| || ||| || || || ||||| || |||||| |
Sbjct 648 AATTGGGCCAGGAAACACTTTTGAATCT-GTTGCTTCGCAATTATCTACACTACAACCTG 706
Query 782 TATGATCAGGCGGAGAAGCT-ACGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAACCA 840
|| || || || |||||| | | ||||||| || ||||| |||||||| || || |||||
Sbjct 707 TACGACCAAGCAGAGAAGTTGA-GATCAAAAGCGCCTCGATTTGAGGCACACTCTAACCA 765
Query 841 ACAGTTTTGTAGGTATCT-GTTCTACCTCGGGAAGATTC-GTACGATTCAGCTTGAGTAT 898
||||||||||||||| || ||| ||||| || ||||| | | |||||||| ||||||||
Sbjct 766 ACAGTTTTGTAGGTA-CTTGTTTTACCTTGGCAAGAT-CAGGACGATTCAACTTGAGTAC 823
Query 899 ACTGATGCGAAAGAGAGCCTCCTTCAGGCTGCCAGGAAAGCCCCTATTGC-TGCTTTGGG 957
|| ||||| |||||||| ||||| || ||||| |||||||| ||| |||| | || ||||
Sbjct 824 ACCGATGCAAAAGAGAGTCTCCTCCAAGCTGCTAGGAAAGCACCTGTTGCAT-CTCTGGG 882
Query 958 CTTCAGAATTCAATGTAATAAATGGGCAATTC-TGGTTCGTCTGCTACTGGGTGAAATAC 1016
|||||||| || || || || ||||| || | | ||||| ||| | ||||||||||||
Sbjct 883 ATTCAGAATCCAGTGCAACAAGTGGGCTAT-CATAGTTCGGCTGTTGTTGGGTGAAATAC 941
Query 1017 CAGAACGGTCGATCTTCACTCA-AAAGGGAATGGAGAAAGCC-CTCAGGCCTTACTTTGA 1074
| ||||| || ||||||||||| ||||| ||||||||| | | || ||||| || |||||
Sbjct 942 CTGAACGATCTATCTTCACTCAGAAAGG-AATGGAGAA-GACTCTTAGGCCATATTTTGA 999
Query 1075 GCTTACCAATGCGGTTAGGATTGGTGACTTGGAGCTGTTTAGGACAGTACAGGAGAAGTT 1134
||| ||||| || || || |||||||||||||||||||| ||| | | || ||||||||
Sbjct 1000 GCTGACCAACGCTGTGAGAATTGGTGACTTGGAGCTGTTCGGGAAAATCCAAGAGAAGTT 1059
Query 1135 CTTGG-ACA-CATTTTCTCAAGACAGAACGCACAATCTCATCGTGAGACTCCGCCACAAT 1192
| | | | ||||| | ||||||| || ||||| ||||| || |||||||| |||||
Sbjct 1060 -T-GCCAAAACATTTGCGGAAGACAGGACTCACAACCTCATAGTCAGACTCCGACACAAC 1117
Query 1193 GTCATCAGGACTGGATTGCGCAACATAAGCATCTCATACTCGAGAATCTCTTTACCCGAT 1252
|| ||||| || ||| |||||||||| ||||| || ||||| ||||||||| ||| |||
Sbjct 1118 GTGATCAGAACAGGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTACAGGAT 1177
Query 1253 GTTGC-CAAAAAGCTGAGGCTCAACTCCGAAAACCCTGTGGCTGATGCGGAAAGCATCGT 1311
||||| ||||| |||||| || ||||| | ||||| ||||||||||| |||||||||||
Sbjct 1178 GTTGCTCAAAA-GCTGAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATCGT 1236
Query 1312 GGC-AAAGGCCATTCGTGATGGAGCGATTGATGCGACCATCGATCACAAAAACGGATGGA 1370
|| |||| ||||| | |||||||| || || || |||||||| ||||| ||||| || |
Sbjct 1237 CGCTAAAG-CCATTAGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGTTGTA 1295
Query 1371 TGGTCTCCAAAGAAACAGGGGACATCTACTCAACGAACGAGCCACAAACTGCATTCAACT 1430
|||||||||| |||||||| ||||||||||| || || || ||||| ||||| || ||||
Sbjct 1296 TGGTCTCCAAGGAAACAGGAGACATCTACTCCACTAATGAACCACAGACTGCGTTTAACT 1355
Query 1431 CAAGAATTGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTC 1490
| || ||||| ||||| | || ||||| || ||||| || |||||| ||||||| || |
Sbjct 1356 CGAGGATTGCCTTCTGTTTGAATATGCACAATGAAGCGGTTAGAGCACTGAGGTTCCCGC 1415
Query 1491 CTAACACTCACaaggagaaagagagcgatgagaagaggagagaga-gaaagcaacaagaa 1549
| ||||| |||| ||||||||||||||| ||||| || || |||| |||| || ||||||
Sbjct 1416 CAAACACGCACAGGGAGAAAGAGAGCGAGGAGAAAAGAAGGGAGATGAAA-CAGCAAGAA 1474
Query 1550 gaagagCTTGCTAAGCATATGGCCGAGGAAGACGATGATGATTTTTAGA 1598
|| ||||| ||||| | ||||| |||||||||||||||||||| ||||
Sbjct 1475 GAGGAGCTCGCTAAATACATGGCTGAGGAAGACGATGATGATTTCTAGA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87901154295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5