BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472254
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20240.1 | Symbols: | SWI-SNF-related chromatin binding pro... 1452 0.0
AT1G20940.1 | Symbols: | F-box family protein | chr1:7295274-7... 342 5e-93
AT1G20360.1 | Symbols: | F-box family protein | chr1:7046504-7... 326 6e-88
AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding pro... 139 8e-32
> AT1G20240.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:7012113-7015216 REVERSE LENGTH=1701
Length=1701
Score = 1452 bits (786), Expect = 0.0
Identities = 1037/1157 (90%), Gaps = 22/1157 (2%)
Strand=Plus/Plus
Query 1 ATGTGTGTTGGTTTTGCGGTAAATCGAAATCGAACCACTATGAGATTCAAGATCGTTTGC 60
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 1 ATGTGTGTTGGTTTCGCGGTAACTCGAAATCGAACCACCATGAGATTCAAGATCGTCTGC 60
Query 61 ATACTCGAGATGCAAACGGTCTACAAATTCGAGATCAGCGACGGATATTCATGGAGATTA 120
|||||||||| ||||||| | || | ||||||||||||||||||||| ||||||||||||
Sbjct 61 ATACTCGAGACGCAAACGCTGTATAGATTCGAGATCAGCGACGGATACTCATGGAGATTA 120
Query 121 TCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCATGACGCGAATGAAACCTGTT 180
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 121 TCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCACGACGCTAATGAAACCTGTT 180
Query 181 TACTTGGACAACACTCTTCATTGGTTGAGAAATGATGGGAGCATCATAGCTTTTAATCCC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TACTTGGACAACACTCTTCATTGGTTGAGAAACGATGGGAGCATCATAGCTTTTAATCCC 240
Query 241 GAGACAGAGCAAGCACGATTGATTCCTTCCAGATTCAGATTCGATGATAATTATATGGTC 300
||||||||| |||||||| |||||||||| ||||||||||| || || | | ||
Sbjct 241 GAGACAGAGGAAGCACGACTGATTCCTTCAAGATTCAGATT---TG---ATCACA-GG-- 291
Query 301 ATAAAACCATTATTTGCAGCAAACGAAGATATCAACCGCCTGACTTTGATATCAATGGCG 360
|| | |||||||||| ||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 292 --AATA-CATTATTTGCGGCAAACGAAAATATCAACCGCCTGACTTTGATATCAAAGACG 348
Query 361 ATAAAAAGAATCTCAGTTTACACACTACTCCAGGATTCGAAGTGGGCTCTCGCCAAGCGG 420
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 349 GTAAAAAGAATATCAGTTTACACACTACTCGAGGATTCGAAGTGGGCTCTCGCCAAGCGG 408
Query 421 ATCAAGTACATATCTACGGACAGAAGAGAGATTATAGCCTCGGATGTGGTTGCGTACGAT 480
|||||| ||||||||| ||| | |||||| |||| | |||| | |||||||||||||||
Sbjct 409 ATCAAGAACATATCTATGGATAAAAGAGATATTAGATACTCGAACGTGGTTGCGTACGAT 468
Query 481 GGCAAGTGTCTTGTGTTGAGGCAGATGAAGAAAGACGA-TCCTCATTGGAGAAGTGTGGT 539
| ||||||||||||| ||||| | || |||||| | | | || | | ||||||||
Sbjct 469 GACAAGTGTCTTGTGCTGAGGGA-AT--TTAAAGAC-ATTAAGC-TT-G-GCAGTGTGGT 521
Query 540 TCATGTGTACGACATGGAAGCTAACTGTTGGAGAGGGCTAGGGGCCATATGTCAGTATGC 599
||||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||
Sbjct 522 TCATGTGTACGACATGGAAACTAACACTTGGAGAGTTTTAGGGGCCATATGTCAGCACGC 581
Query 600 TATCGTCCACGACTTGTATAAGATTACGCCCTCTTTGTTCTTTGTCGAAGAGGATGATGA 659
|| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 582 TACCGTCCAAAAATTGTATAAGATTACACCCTCTTTGTTCTTTGTCGAAGAGGATGATGA 641
Query 660 GAAGCAAAAGGTAGTTGTAGCATCTAATCACCAACACATGTACCTAACCTCGGTTTTGGG 719
|||||| ||||| ||||||||||||||| |||||||||| || |||| | ||||||||||
Sbjct 642 GAAGCACAAGGTCGTTGTAGCATCTAATGACCAACACATCTATCTAAACGCGGTTTTGGG 701
Query 720 AGCCATTGATACCACCAACTATGGCGCCACTTACATCTTTTGCCAGCCTTTGGTCTCTTC 779
| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 702 TGTCATTGATTCAACCAACTATGGCGCCACTTACATCTTTTGCCAACCTTTGGTCTCTTC 761
Query 780 AAGAGATTCTATGTCACCGGGAAATGAAGTGAACT-TGTTTAGAGAGCCATGTTACATTT 838
|||||||||||||||||| | |||||||||||| | ||| ||||||||||||||||||||
Sbjct 762 AAGAGATTCTATGTCACCAGAAAATGAAGTGAA-TCTGTCTAGAGAGCCATGTTACATTT 820
Query 839 TTGGCTCCTGCTCCGGCCTTCTCCTACTATATATTGGTGGCCTCTTTGTCGTTAATCCCC 898
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 821 TTGGCTCCTGCTCGGGCCTTCTCCTACTATATATTGGTGGCCTCTTTGTCGTAAATCCCC 880
Query 899 TCACAAAGAGGTTTCGACTTTTGGATCGCTCTGGCTCAAAGCTTCTGCCTATAATAGTTG 958
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 881 TCACAAAGAGGTTTCGACTTTTTGAACACTCTGGCTCAAAGCTTCTGCCTATAATAGTTG 940
Query 959 GTGGTGATCGTAACGTTGCTGGTACGGAAAGAGCTATGTGCGTCGGTTTCACGGTAAATG 1018
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 941 GTGGTGATCGTAACGTTGCTGGTAGGGAAAGAGGGATGTGCGTCGGATTCACGGTAAATG 1000
Query 1019 GAAACCGAACCACTAAAAGATTCAAGATTGTCTGCATACACGAGATGGAAACGGTGTACG 1078
|||| ||||| ||||| ||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 1001 GAAATCGAACAACTAAGAGATTCAAGATAGTCTGCATACATGAGATGGGAACGGTGTATT 1060
Query 1079 CATTCGAGATCAGCGACGGATATTCTTGGAGATTATCGGAAACGACCATCACCAATAGCT 1138
|||||||| ||||||| |||||||| ||||||||||||||||| ||| ||||| |||||
Sbjct 1061 CATTCGAGCTCAGCGATGGATATTCATGGAGATTATCGGAAACAACCGTCACCGCTAGCT 1120
Query 1139 CAAAAAGTGATCTCACG 1155
|||||||| ||||||||
Sbjct 1121 CAAAAAGTAATCTCACG 1137
Score = 649 bits (351), Expect = 0.0
Identities = 463/517 (90%), Gaps = 8/517 (2%)
Strand=Plus/Plus
Query 1155 GTTGAGAAACGATGGGAGTATCATAGCGTTTAATCCCGAGACAGAGCAAGCACGCTTGAT 1214
|||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1179 GTTGAGAAACGATGGGAGCATCATAACGTTCAATCCCGAGACAGAGCAAGCACGCTTGAT 1238
Query 1215 TGCTTCCATATTTCATCAAAAACCAGAGATGAAACTGTT-TTCCGCTGCAGACGATAA-G 1272
| ||||||||||||||||| |||||||||||||| |||| || || |||||| ||||
Sbjct 1239 TCCTTCCATATTTCATCAAGAACCAGAGATGAAATTGTTGTT-TGCAGCAGACAATAACA 1297
Query 1273 TTGAATCGCTTGACCTTAATATCGGGGACGGGAGAAGAAATTACAGTTTATACACTACTC 1332
|| |||||||||| |||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct 1298 TT-AATCGCTTGATCTTAATATCGGGGACGAAAGAAGAAATTTCAGTTTACACACTACTC 1356
Query 1333 GAAAATTCCAAATGGACCCTCGCCAGGCAGATCAAGAACGTATCTATGAAGGAAAGTGAA 1392
|| ||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1357 GACAATTCTGAATGGACCGTCACCAGCCAGATCAAGAACGTATCTATGAAGGAAAGTGAA 1416
Query 1393 CTTGTATGTTGGAACATTGTTGTGTACGATGGCAAGAATCTAGTGGTGAGGGAGATGAAG 1452
|||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1417 CTTGTATGCTGGAACATTGTTGTGTACGACGGCAAGCATCTAGTGGTGAGGGAGATGAAA 1476
Query 1453 GATAGATTAAAAGGTGTGGTTCATGTGTACGACATGGAGGTTAACAGTTGGGGAGTTATA 1512
||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1477 GATTCATTAAACGGTGTGGTTCATGTGTACGACATGGAAGTTAAAAGTTGGGAAGTTATA 1536
Query 1513 GGGTCAACCACATCTTGGTCCACTCGCGTCCCAGACTTCTATAAATTTACGCCCA-CCTT 1571
|||||||||| ||||||||||| |||||||| |||||||||||||||||| || | ||||
Sbjct 1537 GGGTCAACCAAATCTTGGTCCAGTCGCGTCCGAGACTTCTATAAATTTACACC-ATCCTT 1595
Query 1572 GTTCTTTGTCGAGGAAGATGAGCAGCATAAGGTGGTTGTAGCTTATAATGACCAACATGT 1631
||||||||||||||| ||||||||||| |||||| ||||||| ||||||| ||| |
Sbjct 1596 GTTCTTTGTCGAGGAGGATGAGCAGCAGAAGGTGACAGTAGCTTCTAATGACAAACGCAT 1655
Query 1632 GTCC-TATCTAACTGCGATTATGGGACTCGTTGATAC 1667
||| |||||||||||||||||||||||| |||||||
Sbjct 1656 -TCCCTATCTAACTGCGATTATGGGACTCATTGATAC 1691
> AT1G20940.1 | Symbols: | F-box family protein | chr1:7295274-7296518
REVERSE LENGTH=1245
Length=1245
Score = 342 bits (185), Expect = 5e-93
Identities = 589/772 (76%), Gaps = 76/772 (10%)
Strand=Plus/Plus
Query 1 ATGTGTGTTGGTTTTGCGGTAAATCGAAATCGAACCACTATGAGATTCAAGATCGTTTGC 60
||||| ||||| ||||||||||||||||||| ||| || | ||||||||||||||| ||
Sbjct 511 ATGTGCGTTGGATTTGCGGTAAATCGAAATCTAACAACCAAGAGATTCAAGATCGTGGGC 570
Query 61 ATACTCGAGAT-GCAAACGGTCTACAAATTCGAGATCAGCGACGGATATTCATGGAGATT 119
||||||||||| | |||| || ||| ||||||||||| ||| ||| | || ||||||||
Sbjct 571 ATACTCGAGATGGAAAAC-GTATACGGATTCGAGATCAACGAAGGAGACTCTTGGAGATT 629
Query 120 ATCGGAAACGACCATCACCCCTAGCTCAAAAAGTGATCTCA-TGACGCGAATGAAACCTG 178
||||||||||| |||||| ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 630 ATCGGAAACGAGTATCACCACTAGCTCAAAAAGTGATCTCACT-ACGCGGATGAAACCTG 688
Query 179 TTTACTTGGACAACACTCTTCATTGGTTGAGAAATGATGGGAGCATCATAG-CTTTTAAT 237
|||||||||||||||||||||| ||| ||||||| ||||| |||||||| | ||||||||
Sbjct 689 TTTACTTGGACAACACTCTTCACTGGCTGAGAAACGATGGCAGCATCAT-GTCTTTTAAT 747
Query 238 CCCGAGACAGAGCAAGCACGATTGATTCCTTCCAGATT-CAGATTCGATGATAATTATAT 296
|||||||||||||||||| | ||||||||||||| ||| || | || || |
Sbjct 748 CCCGAGACAGAGCAAGCATGCTTGATTCCTTCCATATTTCA--T-CGG-GA-ACC----- 797
Query 297 GGTCATAA-AACC-ATTATTT-GCAGCAAA-CG--AAGATATCAACCGCCTGACTTTGAT 350
|| ||| || | | | ||| || | ||| || ||||| ||| |||||||| | ||
Sbjct 798 GG--ATACGAAGCTACT-TTTCGCGG-AAAGCGTTAAGAT--CAATCGCCTGACCCTAAT 851
Query 351 ATCAATGG-CGATAAAAAGAATCTCAGTTTACACACTACTCCAGGATT-CGAAGTGGGCT 408
|| || ||||| ||| |||||| ||||||||||| || || || | || ||| |
Sbjct 852 TTCGG-GGACGATAGAAACAATCTCCGTTTACACACTTGTCGAGAATCACAAA-TGGACA 909
Query 409 CTCGCCAAG-CGGATCAAGTACATATCTA-CGGACAGAAGAGA-GATTATAGCCTCGGAT 465
||| | ||| ||||||||| ||||||||| || | ||||| | | || || | |||
Sbjct 910 CTCAC-AAGGCGGATCAAGAACATATCTATCG-AG-GAAGAAACGCTTGTATATT-GGAA 965
Query 466 G-TGGTTGCGTACGATGGCAAGTGTCTTGTGTTGAGGCAGATGAAGAAAG----ACGATC 520
| | | |||||||||||||||||||||| ||||| || |||| | | || |
Sbjct 966 CATAGCTATGTACGATGGCAAGTGTCTTGTGGTGAGGGTGAAAAAGATGGGTTTA-GAAC 1024
Query 521 CTCATTGGAGAAGTGTGGTTCATGTGTACGACATGGAAGCTAACTGTTGGAGAGGGCTAG 580
|| |||| |||||| |||||||||||||||||||||||||| ||||| ||| | |
Sbjct 1025 CT--TTGGC-AAGTGTTCTTCATGTGTACGACATGGAAGCTAACAGTTGGGGAGTTTT-G 1080
Query 581 GGGCCATATG-TCAG-TATG-CT-A-T--CGTCC-ACGACTTGTATAAGATT-ACGCCCT 631
| | || | | | | || | | | ||||| | || || ||||| ||| |||||||
Sbjct 1081 GTGTCA-ACCCTT-GCT-TGGCCCAATTGCGTCCGA-GATTTCTATAA-ATTGACGCCCT 1135
Query 632 CTTTGTTCTTTGTCGAAGAGGATGATGAGAAGCAAAAGGTAG-TTGTAGCATCTAATCAC 690
| ||||||||||| || |||||||| | || || ||||| | |||| || |||||| ||
Sbjct 1136 CCTTGTTCTTTGTAGAGGAGGATGA-GC-AA-CAGAAGGT-GCTTGTTGCTTCTAATGAC 1191
Query 691 CAACACATGTACCTA-ACC--T-CGGTTTTGGGAGC-CATTGATACCACCAA 737
| || ||| | |||| | | || || ||||| | |||||||||||||||
Sbjct 1192 CGACGCATCT-CCTATATAAATTCGATTATGGGA-CTCATTGATACCACCAA 1241
> AT1G20360.1 | Symbols: | F-box family protein | chr1:7046504-7047744
REVERSE LENGTH=1241
Length=1241
Score = 326 bits (176), Expect = 6e-88
Identities = 422/537 (79%), Gaps = 32/537 (6%)
Strand=Plus/Plus
Query 1155 GTTGAGAAACGATGGGAGTATCATAGCGTTT-AATCCCGAGACAGAGCAAGCACGCTTGA 1213
|||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 690 GTTGAGAAACGACGGGAGCATCATAGC-TTTCAATCCCGAGACAGAGCAAGCACGCTTGA 748
Query 1214 TTGCTTCCA-TATTTCATCAA-AA--ACCAGAGATGAAACTGTT--TTCCGCTGCAGACG 1267
|| ||||| | |||||||| || ||| || ||||||||||| || || ||||| |
Sbjct 749 TTCCTTCCGGT-TTTCATCAGGAAGTACCGGATATGAAACTGTTACTTGCG--GCAGATG 805
Query 1268 ATAAGTTGAATCGCTTGACCTTAATATCGGGGACGGGAGAAGA-AAT-TACAGTTTATAC 1325
||||| | |||||||||||||||||||| ||||| | || | ||| | ||||||| ||
Sbjct 806 ATAAGATCAATCGCTTGACCTTAATATCAGGGACAAAACAA-ACAATCT-CAGTTTACAC 863
Query 1326 ACTACTCGAAAAT-TCCAAATGGACCCTCGCCAGGCAGATCAAGAACGTATCTATGAAGG 1384
| |||||| ||| || |||||| ||||| |||| |||||||||||||||| |||| |
Sbjct 864 ATTACTCGGGAATCTC-AAATGGGGTCTCGCTAGGCGGATCAAGAACGTATCTCTGAAAG 922
Query 1385 AAAGTGAACTTGTATGTTGGAACATTGTTGTGTACGATGGCAAGAATCTAGTGGTGAGGG 1444
||| ||| ||| ||| |||||||| |||||||||||||||||| ||| |||||||||
Sbjct 923 AAAATGAG-TTGAATGCTGGAACATGGTTGTGTACGATGGCAAGCGTCTTCTGGTGAGGG 981
Query 1445 AGATGAAG--GA-TAGATTAAAAGGTGTGGTTCATGTGTACGACATGGAGGTTAACAGTT 1501
||| ||| || | | ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 982 AGAAGAAAAAGAATCGTTTAAATGGTGTAGTTCATGTGTACGACATGGAAACTAACAGTT 1041
Query 1502 GGGGAGTTATAGGGTCAACCACATCTT-GGTCCACTCGC-GTCCCAGACTTCTATAAATT 1559
|||||||| ||||||| | || || | || || | || ||| ||||||||||| ||
Sbjct 1042 GGGGAGTTTTAGGGTCGATCATATATACGG-CCGGT-GCAGTCTGGGACTTCTATAAGTT 1099
Query 1560 TACGCCCACCT--TGTTCTTTGTCGAGGAAGATGAGCAGCAT-A-AG-GTGGTTGTAGCT 1614
|||||| ||| ||| || | | ||||| | |||||| || | | | | | |||| |
Sbjct 1100 TACGCCGTCCTGATGTCCTGT-T-GAGGAGGGTGAGCAAAATTATAAAGCGATAGTAGAT 1157
Query 1615 TATAATGACCAACATGTGTCCTATCTAACTGCGATTATGGGACTCGTTGATACGACC 1671
| |||||| || | || | |||||||| | | |||||| |||||||| |||| |||
Sbjct 1158 TGTAATGAACATCGCGTCTTCTATCTAATTTCTATTATGAGACTCGTTAATACAACC 1214
> AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:7025548-7029698 REVERSE LENGTH=1149
Length=1149
Score = 139 bits (75), Expect = 8e-32
Identities = 206/268 (77%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 1333 GAAAATTCCAAATGGACCCTCGCCAGGCA-GATCAAGAACGTATCTAT-GAAGGAAAGTG 1390
|||||| |||||||| | || | || | | |||||||||||| || || ||||| ||||
Sbjct 817 GAAAATCCCAAATGGGCTCTTGACAAG-AGGATCAAGAACGTGTCGATGGAAGG-AAGT- 873
Query 1391 A-ACTTGTATGT-TGGAACATTGTTGTGTACGATGGCAAGAATCTAGTGGTGAGGGAGAT 1448
| ||| | | |||||| | |||| ||||||||||||| |||||||||||||||||
Sbjct 874 ATGTTTG-AACTCTGGAACGTGGTTGCGTACGATGGCAAGCGGCTAGTGGTGAGGGAGAT 932
Query 1449 GAAGGATA-GATTAAAAGGTGTGGTTCATGTGTACGACATGGAGGTTAACAGTTGGGGAG 1507
|||||||| ||| |||||||||||||||||||||||||||| | || |||||| |||
Sbjct 933 GAAGGATATAATT-GAAGGTGTGGTTCATGTGTACGACATGGAAGCCAATAGTTGGAGAG 991
Query 1508 TTATAGGGTCAACCACATCTTGGTCCACTC--GCGTCCCAGACTTCTATAAATTTACGCC 1565
|| || | || |||| || ||| || | ||| | ||||||||||| ||||| ||
Sbjct 992 TTTTATGCTCGACCAAATG--GGTGAACCCAAGCGACAGTGACTTCTATAAGTTTACACC 1049
Query 1566 CACCTTGTTCTTTGTCGAGGAAGATGAG 1593
| || || || ||||| ||| | ||||
Sbjct 1050 CTCCATGGTCCATGTCGGGGAGGGTGAG 1077
Score = 82.4 bits (44), Expect = 1e-14
Identities = 90/110 (82%), Gaps = 11/110 (10%)
Strand=Plus/Plus
Query 466 GTGGTTGCGTACGATGGCAAGTGTCTTGTGTTGAGGCAGATGAAGAAAGACGATCCTCAT 525
||||||||||||||||||||| | || ||| ||||| || || | ||| ||| | ||
Sbjct 892 GTGGTTGCGTACGATGGCAAGCGGCTAGTGGTGAGG--GA-GATG-AAG--GAT-ATAAT 944
Query 526 TGGAGAAGTGTGGTTCATGTGTACGACATGGAAGCTAACT-GTTGGAGAG 574
| || | |||||||||||||||||||||||||||| || | |||||||||
Sbjct 945 T-GA-AGGTGTGGTTCATGTGTACGACATGGAAGCCAA-TAGTTGGAGAG 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5