BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472256
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20260.1 | Symbols: | ATPase, V1 complex, subunit B protein... 2926 0.0
AT1G76030.1 | Symbols: | ATPase, V1 complex, subunit B protein... 1912 0.0
> AT1G20260.1 | Symbols: | ATPase, V1 complex, subunit B protein
| chr1:7016693-7020590 FORWARD LENGTH=1919
Length=1919
Score = 2926 bits (1584), Expect = 0.0
Identities = 1759/1843 (95%), Gaps = 13/1843 (1%)
Strand=Plus/Plus
Query 27 TCTCGTCTCTGCT-TAATTGAATCCATTAGAGAGGGATTGTGGA---G--TGGCTTGATT 80
|||| ||||| || | |||||||||||| |||||||||||||| | ||| ||||||
Sbjct 79 TCTC-TCTCTTCTCTGCTTGAATCCATTACAGAGGGATTGTGGAGTGGTTTGGTTTGATT 137
Query 81 TGATATCGATCTGTGACAATGGTGGAGACTGGTATCGACATGGAGGAAGGAACTCTCGAG 140
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 138 TGATTTCGATCTGTGACAATGGTGGAGACTAGTATCGACATGGAGGAAGGAACTCTCGAG 197
Query 141 ATCGGAATGGAATATAGAACTGTCTCCGGGGTTGCGGGACCCTTGGTCATCCTTGACAAA 200
||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 198 ATCGGAATGGAGTATAGAACTGTCTCCGGAGTTGCTGGACCTTTGGTCATCCTTGACAAA 257
Query 201 GTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACCAGA 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 258 GTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGA 317
Query 261 CGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGTGGTCAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACA 377
Query 321 TCTGGAATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAGACGCCT 380
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 378 TCTGGGATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAAACGCCT 437
Query 381 GTTTCATTGGACATGCTTGGCCGTATATTTAACGGCTCAGGAAAGCCAATTGACAATGGC 440
|| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 438 GTGTCATTGGACATGCTTGGCCGCATATTTAACGGCTCGGGAAAGCCAATTGATAATGGC 497
Query 441 CCTCCTATTTTGCCAGAGGCATACCTTGATATTTCGGGTAGTTCAATCAACCCCAGTGAA 500
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 498 CCTCCTATTTTGCCAGAGGCATACCTTGATATTTCTGGAAGTTCAATCAACCCCAGTGAA 557
Query 501 AGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGAACCTACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCC 617
Query 561 ATTGCTCGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAACGAGATT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 618 ATTGCTCGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAATGAGATT 677
Query 621 GCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAGAAGACTGAGAACTTA 680
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 678 GCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAAAAGACTGAGAACTTA 737
Query 681 ATTCAGGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAAC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ATTCAGGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAAC 797
Query 741 ATGGAGACAGCTCAGTTCTTCAAGCGCGATTTTGAAGAAAATGGATCGATGGAAAGAGTT 800
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 798 ATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGATCGATGGAAAGGGTT 857
Query 801 ACCCTTTTCTTGAACCTGGCTAATGACCCAACCATCGAGAGAATTATCACTCCTCGAATT 860
||||||||| ||||| |||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 858 ACCCTTTTCCTGAACTTGGCCAATGATCCAACCATTGAGAGAATTATCACTCCTCGAATT 917
Query 861 GCCCTTACAACCGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTGCTTGTTATATTG 920
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 918 GCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGGAAAGCATGTGCTTGTTATATTG 977
Query 921 ACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTT 1037
Query 981 CCTGGAAGACGTGGATATCCAGGGTATATGTATACAGATCTTGCAACTATTTACGAACGT 1040
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1038 CCTGGAAGACGTGGATATCCGGGGTATATGTATACAGATCTTGCAACTATTTATGAACGC 1097
Query 1041 GCAGGACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCC 1100
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GCGGGACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCC 1157
Query 1101 AATGATGATATCACCCACCCTACTCCGGATCTTACTGGTTACATCACTGAGGGTCAGATA 1160
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1158 AATGACGATATCACTCACCCTACTCCGGATCTTACTGGTTACATTACTGAGGGTCAGATA 1217
Query 1161 TATATTGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCA 1220
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1218 TATATTGATAGGCAACTTCACAACAGACAGATATACCCACCCATTAACGTGCTTCCATCA 1277
Query 1221 CTTTCTCGATTAATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGAT 1280
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CTTTCTCGGCTGATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGAT 1337
Query 1281 GTGTCCAACCAGCTATACGCAAATTATGCAATCGGGAAAGATGTTCAAGCCATGAAAGCT 1340
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1338 GTGTCCAACCAGCTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCT 1397
Query 1341 GTTGTTGGAGAAGAAGCTCTTTCTTCTGAGGATCTGCTGTATTTGGAGTTTCTAGATAAA 1400
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1398 GTTGTTGGAGAAGAAGCTCTGTCTTCCGAGGATCTGCTGTATTTAGAGTTTCTGGATAAA 1457
Query 1401 TTTGAGAGGAAGTTTGTGATGCAAGGCGCATATGATACAAGAAACATCTTCCAGTCGCTT 1460
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1458 TTTGAAAGGAAGTTTGTGATGCAAGGCGCATACGATACAAGGAACATCTTCCAGTCGCTT 1517
Query 1461 GACTTGGCATGGACATTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCC 1520
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GACTTGGCATGGACACTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCC 1577
Query 1521 AAAACACTTGATCAATTCTACAGCCGTGACTCCACAAGCTAAGCCTTTTGAAACAACCTC 1580
|||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||
Sbjct 1578 AAAACACTTGATCAATTCTACAGCCGCGACTCCACAAGCTAAACCTTTTAAAACAAGCTC 1637
Query 1581 TATGTTGCTCCATTCTTATCTTATTTGGAACTTAAATCATATCGAGAGAAGACAAACATG 1640
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1638 TATGTTGCTCCATTCTTATCTTATTTGGAACTTAAATCATACCGAGAGAAGACAAACAGG 1697
Query 1641 ATTGATTGCGTGAAAACAAAACTCAGAGAATTGCGAA-TGGGGAATTTTCTTTTGTTTTA 1699
|||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1698 ATTGGTTGCGTGAAAACAAAACTCAGAGAATTGTGAAGTTGGGAATTTTCTTTTGTTTT- 1756
Query 1700 TC-ATTTGTACAATAAAGGTTTGTGTAGGGAGACTTCGTACAAAATCTATTTATAAACCA 1758
|| ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1757 TCCATTTGTATAATAAAGGTTTGTGTAGAGAAACTTCGTACAAAATCTATTTATAAACCA 1816
Query 1759 CTTCTGCTCCTGTCTTCGAAACTGGTGAATCATGTCTTTTT-GTTGTTGTGTAATAATAA 1817
|||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1817 CTTCAGCTCCTGTCTTCCAAACTGGTGAATCATGTCTTTTTTGTTGTGGTGTAATAATAA 1876
Query 1818 TCTCTTCCCACACTTTTATATTTATG--CACCATTGTTTGTGC 1858
|||||||| ||||||||| || |||| |||||||||||||||
Sbjct 1877 TCTCTTCCAACACTTTTAAATATATGTACACCATTGTTTGTGC 1919
> AT1G76030.1 | Symbols: | ATPase, V1 complex, subunit B protein
| chr1:28533798-28537194 FORWARD LENGTH=1900
Length=1900
Score = 1912 bits (1035), Expect = 0.0
Identities = 1332/1478 (90%), Gaps = 9/1478 (1%)
Strand=Plus/Plus
Query 88 GATCTGTGACAATGGTGGA-GACTGGTATCGACATGGAGGAAGGAACTCTCGAGATCGGA 146
||||||||| ||||| ||| || || | ||||||| || ||||| ||||| ||||||||
Sbjct 151 GATCTGTGAAAATGG-GGACGAATGATCTCGACATCGAAGAAGGGACTCTGGAGATCGGC 209
Query 147 ATGGAATATAGAACTGTCTCCGGGGTTGCGGGACCCTTGGTCATCCTTGACAAAGTGAAG 206
||||| ||||||||||| || || ||||| ||||| |||||||| |||||||||||||||
Sbjct 210 ATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGTCATTCTTGACAAAGTGAAG 269
Query 207 GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACCAGACGTGGT 266
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 270 GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGACGTGGT 329
Query 267 CAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACATCTGGA 326
||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 330 CAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGCAGGTTTTTGAAGGAACATCTGGA 389
Query 327 ATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAGACGCCTGTTTCA 386
||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| |||
Sbjct 390 ATTGACAACAAGTTTACAACCGTGCAATTCACAGGAGAGGTTTTGAAAACACCTGTATCA 449
Query 387 TTGGACATGCTTGGCCGTATATTTAACGGCTCAGGAAAGCCAATTGACAATGGCCCTCCT 446
|||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 450 TTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCT 509
Query 447 ATTTTGCCAGAGGCATACCTTGATATTTCGGGTAGTTCAATCAACCCCAGTGAAAGAACC 506
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 510 ATTCTGCCAGAAGCATACCTTGATATTTCAGGAAGTTCAATCAACCCCAGTGAAAGAACC 569
Query 507 TACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCCATTGCT 566
|| ||||||||||||||||| || || || || ||||| ||||||||||| |||||||||
Sbjct 570 TATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGTCATGAATTCCATTGCT 629
Query 567 CGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAACGAGATTGCTGCT 626
||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||||
Sbjct 630 CGTGGACAGAAGATTCCACTTTTCTCTGCTGCTGGTCTTCCACATAATGAAATAGCTGCT 689
Query 627 CAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAGAAGACTGA-GAACTTAATTCA 685
|| ||||||||||||||||| || || ||||| ||||| ||||||| || || | ||
Sbjct 690 CAGATTTGTCGTCAGGCTGGTCTAGTCAAGCGTTTGGAAAAGACTGTTGATCT-ACTT-- 746
Query 686 GGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAACATGGA 745
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 747 G-AGGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGGTGTGAACATGGA 805
Query 746 GACAGCTCAGTTCTTCAAGCGCGATTTTGAAGAAAATGGATCGATGGAAAGAGTTACCCT 805
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 806 GACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAATGGAGAGAGTTACTCT 865
Query 806 TTTCTTGAACCTGGCTAATGACCCAACCATCGAGAGAATTATCACTCCTCGAATTGCCCT 865
|||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 866 TTTCCTGAACCTGGCCAATGACCCAACCATTGAGAGAATCATCACTCCTCGAATTGCCCT 925
Query 866 TACAACCGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTGCTTGTTATATTGACAGA 925
||||| ||||||||| ||||||||||||||||||| || || |||||||||||||| ||
Sbjct 926 CACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGA 985
Query 926 CATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTTCCTGG 985
|||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 986 TATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCCGCTGCCCGAGAAGAGGTTCCCGG 1045
Query 986 AAGACGTGGATATCCAGGGTATATGTATACAGATCTTGCAACTATTTACGAACGTGCAGG 1045
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||
Sbjct 1046 AAGACGTGGATATCCAGGTTATATGTACACTGATCTTGCAACTATTTATGAACGTGCTGG 1105
Query 1046 ACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCCAATGA 1105
||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||||||
Sbjct 1106 GCGTATAGAAGGAAGAAAAGGTTCCATCACCCAAATTCCAATCCTCACTATGCCCAATGA 1165
Query 1106 TGATATCACCCACCCTACTCCGGATCTTACTGGTTACATCACTGAGGGTCAGATATATAT 1165
|||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1166 CGATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGGTCAGATATATAT 1225
Query 1166 TGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCACTTTC 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1226 CGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCCCTTTC 1285
Query 1226 TCGATTAATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTC 1285
||| ||||||||||||||||| || || || |||||||| ||||||||||||||||||||
Sbjct 1286 TCGTTTAATGAAGAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTC 1345
Query 1286 CAACCAGCTATACGCAAATTATGCAATCGGGAAAGATGTTCAAGCCATGAAAGCTGTTGT 1345
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1346 GAACCAGCTGTATGCAAATTATGCAATCGGGAAAGATGTTCAAGCGATGAAAGCTGTTGT 1405
Query 1346 TGGAGAAGAAGCTCTTTCTTCTGAGGATCTGCTGTATTTGGAGTTTCTAGATAAATTTGA 1405
|||||||||||| |||||||| |||||| |||| ||| | |||||| | ||||| |||||
Sbjct 1406 TGGAGAAGAAGCACTTTCTTCAGAGGATTTGCTTTATCTAGAGTTTTTGGATAAGTTTGA 1465
Query 1406 GAGGAAGTTTGTGATGCAAGGCGCATATGATACAAGAAACATCTTCCAGTCGCTTGACTT 1465
||||||||||||||||||||| || ||||||||| | ||||||||||||||||| |||||
Sbjct 1466 GAGGAAGTTTGTGATGCAAGGAGCTTATGATACACGCAACATCTTCCAGTCGCTGGACTT 1525
Query 1466 GGCATGGACATTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCCAAA-A 1524
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| |
Sbjct 1526 AGCTTGGACATTGCTCCGTATCTTCCCACGGGAGCTTCTTCATCGTATCCCTGC-AAAGA 1584
Query 1525 CACTTGATCAATTCTACAGCCGTGACTCCACAAGCTAA 1562
||||||| |||||||||||||| ||||| || || |||
Sbjct 1585 CACTTGACCAATTCTACAGCCGCGACTCAACCAGTTAA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5