BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472257
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20270.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1945 0.0
> AT1G20270.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:7020749-7023067
REVERSE LENGTH=1339
Length=1339
Score = 1945 bits (1053), Expect = 0.0
Identities = 1160/1210 (96%), Gaps = 13/1210 (1%)
Strand=Plus/Plus
Query 32 TCTAGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 91
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCTCGGGTGGATCTTTGTTGATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAAT 184
Query 92 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGC 244
Query 152 TTTTGGCTTTTGGGGTTTTCTCTCTTCCTATTAACAACGATGAATCTTCTCCGATCGATC 211
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 245 TTTTGGCTTTCGGAGTTTTCTCTCTTCCTATTAACAACGATGAATCCTCTCCTATCGATC 304
Query 212 TCTCTTATTTCCGACGAGCTGCTACCGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 271
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 305 TCTCTTATTTCCGACGAGCTGCCACTGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACC 364
Query 272 AGTGGACTGAAGTGCTCTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 331
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AGTGGACTGAAGTGCTTTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGA 424
Query 332 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTG 484
Query 392 TAGATAGCGAAACTGGCAAGAGCAAAGATAGCAGGGTGCGGACAAGTTCAGGGACTTTCC 451
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 485 TAGATAGCGAAACCGGCAAGAGCAAAGATAGCAGGGTGCGAACAAGCTCAGGGACTTTCC 544
Query 452 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCTGATTACACCT 511
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 545 TTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCAGATTACACCT 604
Query 512 TTATTCCTGCAGATCATGGTGAAGGACTTCAAATTCTTCACTACGAAGCAGGGCAAAAGT 571
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 605 TTATTCCTGCAGATCATGGTGAAGGACTTCAAGTTCTTCACTACGAAGCAGGGCAAAAGT 664
Query 572 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAGAATGGAGGTCAACGGA 631
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 ATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAAAATGGAGGTCAACGGA 724
Query 632 TGGCTACAATGCTTATGTATCTGTCCGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTG 691
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 725 TGGCTACAATGCTTATGTATCTGTCGGATGTTGAGGAAGGCGGTGAAACAGTGTTTCCTG 784
Query 692 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAA 844
Query 752 AGGGACTTTCCGTAAAGCCGAGAATGGGCGATGCATTGCTTTTCTGGAGCATGAGGCCTG 811
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 845 AGGGACTTTCCGTAAAGCCGAGAATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCTG 904
Query 812 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 ATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGT 964
Query 872 GGTCATCTACCAAATGGATGCATGTCGGCGAGTACAAAATCTAGCGTTTTTGGTTGCTGG 931
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 965 GGTCATCTACCAAATGGATGCATGTTGGCGAGTACAAAATCTAGCGTGTTTGGTTTCTGG 1024
Query 932 ACAGTAAACTGTTTCCTTTCATGGTGGATGGAATGCAATGTTGGAACTAGAAGTTACAGA 991
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 1025 ACAGTAAACTGTTTCCTTTCATGGTGGATGGGATGCAAAGTTGGAACTAGAAATTACAGA 1084
Query 992 GAGTTGATGCTTGTTTTTTCCCTGCGGCTCAGTACATTCCTTTGAT--GAGTGGGATTCA 1049
||||||||| |||||||||||||||||||| || |||||||| | | || |||||||||
Sbjct 1085 GAGTTGATGTTTGTTTTTTCCCTGCGGCTCGGTGCATTCCTT-GCTTTGA-TGGGATTCA 1142
Query 1050 AGGTTTATATATCATCAGAGAATACCAAAAGATAGGGATTTTGTTAGAGTACATTAGGAT 1109
|||||||| || | ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1143 AGGTTTATC-AT--T-AGAGAATACCAAAAGATAGAGATTTTGTTAGAGTAAATTAGGAT 1198
Query 1110 GGCTTAGAGTGACTGTTGCTCATTGGTATACACC-TAAAGGTCTTGTGTCTTTGAACA-G 1167
|||||||||||||| || ||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1199 GGCTTAGAGTGACTCTTACTCATTGGTATAC-CCATAAAGGTCTTGTGTCTTTGAACAAG 1257
Query 1168 AAGTTGTGTATTACTTAGTTTTGTGGTGtttttttctttt-tttGTGATTAGAAACATAA 1226
| |||||| ||||| |||||||||||| || |||| |||| |||||||||||||||||||
Sbjct 1258 A-GTTGTGAATTACATAGTTTTGTGGTATTCTTTTGTTTTGTTTGTGATTAGAAACATAA 1316
Query 1227 TCAAATTAAA 1236
||||||||||
Sbjct 1317 TCAAATTAAA 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5