BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472258
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2656 0.0
AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding pro... 108 2e-22
> AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:7029629-7031535 FORWARD LENGTH=1907
Length=1907
Score = 2656 bits (1438), Expect = 0.0
Identities = 1610/1694 (95%), Gaps = 8/1694 (0%)
Strand=Plus/Plus
Query 1 CTTCCTCCTTCTTCACCATCGCCACTCTGCTCCGTTCGACATTTAGAAGAGAGTGACCAA 60
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1 CTTCGTCCTTCTTCACCATCGCCACTCTGCTCCGTTCTACATTTAGAAGAGACTGACCAA 60
Query 61 AATCTTCCATTAATGGCGTTACTCCGGTCAAAATTCCATCTTTCTCGAACCCTTTACTTC 120
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 61 AATCTCCCATTAATGGCGTTACTCCGATCAAAACTCCATCTTTCTCGAACCCTTTCCTTC 120
Query 121 ATCTCTCCTCGTCTA-CCAAAACCCTTCTCCACCTCCGCAACTTCTCTACTCAATGACCA 179
|||||||||| |||| |||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 121 ATCTCTCCTCTTCTACCCAAAA-CCTTCTCCACCTCGGCAACTTCTCTACTCAGTGACCA 179
Query 180 TGAAAACGACGAATCCGCCGCCACCGTAACCGGCGTCGTCTCTGTCCCAGTCTCATCTCT 239
||||||||||||||||||||||||| |||||| || ||||||||||||| ||||| ||||
Sbjct 180 TGAAAACGACGAATCCGCCGCCACCATAACCGCCGCCGTCTCTGTCCCAATCTCACCTCT 239
Query 240 GTTAACTCCAGAAGATACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTTAACTCCGGAAGACACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTA 299
Query 300 TCGCAAAAACCCTACAAACCCCAACGACGCCGTCTTAAACCCTAGCTTAACCCTTCC-TG 358
||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||
Sbjct 300 TCGCAAAAACCCTACAAGCCCCAACGACGCCATCTTAAACCCTAGCTTAACTC-TCCATG 358
Query 359 CTCTCTCCCTCGATTTCTCCCAAA-TCAACGCTTCTCGAA-TCTCTCCCTCTGTCGTCCG 416
|||||||||||||||||||||||| | || |||| | || |||||||||| ||||||||
Sbjct 359 CTCTCTCCCTCGATTTCTCCCAAATTGAA-ACTTC-CCAAGTCTCTCCCTCCGTCGTCCG 416
Query 417 ATGCGTGATAGAGAAGTGTGGCAGTGTCCGCCATGGAATCCCTCTTCACCAATCTCTAGC 476
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 ATGCGTGATAGAGAAGTGCGGCAGTGTCCGCCACGGAATCCCTCTTCACCAATCTCTAGC 476
Query 477 TTTCTTCAATTGGGCCACTTCACGAGACGATTACGACCAAAAATCGCCTCATCCTTACAA 536
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 477 TTTCTTCAATTGGGCAACTTCACGAGACGATTACGACCACAAATCACCTCATCCTTACAA 536
Query 537 CGAAATGATCGATCTTGCAGGAAAGGTTAGACAATTTGACTTAGCTTGGCATTTGATTGA 596
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 CGAAATGATCGATCTTTCAGGAAAGGTTAGACAATTCGACTTAGCTTGGCATTTGATTGA 596
Query 597 TCTCATGAAATCGAGAAACGTCGAGATTTCGATTGAGACCTTCACGATTTTGATTAGACG 656
||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 597 TCTAATGAAATCCAGAAACGTAGAGATTTCGATTGAAACCTTCACGATTTTGATTAGACG 656
Query 657 TTATGTTAGAGCTGGTTTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTATGTTAGAGCTGGATTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTA 716
Query 717 CGGTTGCGTTCCTGATAAAATCGCGTTTTCGATAGTTATTAGTAACCTTTCTAGAAAGAG 776
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 717 CGGTTGCGTACCTGATAAAATCGCGTTTTCCATAGTTATTAGTAACCTTTCTAGGAAGAG 776
Query 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGGTTCGAGCCTGATGT 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 GAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGATTCGAGCCTGATGT 836
Query 837 TATAGTTTACACCAATTTGGTTCGTGGGTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 TATAGTTTACACCAATTTGGTTCGTGGTTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGA 896
Query 897 GAAAGTGTTCAAGGAGATGAAATTGGCTGGGATTGAACCGAATGTGTACACTTACAGCAT 956
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 897 GAAAGTGTTCAAGGAGATGAAGTTGGCTGGGATTGAACCTAATGTGTATACTTACAGTAT 956
Query 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGCGCGCATGATGTTTTTGCTGA 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 957 TGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGTGCGCATGATGTGTTTGCGGA 1016
Query 1017 TATGTTAGATTCGGGTTGTGCTCCAAATGCGATTACTTTCAATAACTTGATGAGGGTTCA 1076
|||||||||||| |||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1017 TATGTTAGATTCAGGTTGTGCGCCGAATGCGATTACTTTTAACAACTTGATGAGGGTTCA 1076
Query 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGG 1136
Query 1137 ATGCGAGCCTGATACTATTACTTATAACTTCCTCATTGAGACTCATTGCAGAGACGAGAA 1196
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1137 ATGTGAGCCTGATACTATTACTTATAACTTCCTTATTGAGGCTCATTGCAGAGACGAGAA 1196
Query 1197 TCTTGAAAATGCGGTGAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTGGAAAACGCGGTCAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGC 1256
Query 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCCCA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 TTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCTCA 1316
Query 1317 TAGGATGTATTCGAAAATGATGGAAGCAAAATGTGAGCAGAATACAGTGACTTATAATAT 1376
||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1317 TAGGATGTATTCGAAGATGATGGAAGCGAAATGTGAGCCGAATACGGTGACTTATAATAT 1376
Query 1377 TCTGATAAGGATGTTTGCCGGGTCGAAATCTACTGATATGGTTCTGAAGATGAAGAAGGA 1436
||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1377 ACTGATGAGGATGTTTGTCGGGTCAAAATCTACTGATATGGTTCTGAAGATGAAGAAAGA 1436
Query 1437 AATGGATGATAAAGAAGTTGAGCCAAATGTGAATACCTATAGGCTTCTGGTTACGATGTT 1496
||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1437 GATGGATGATAAAGAAGTTGAGCCGAATGTGAATACTTATAGGCTTTTGGTTACGATGTT 1496
Query 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAA 1556
Query 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAAAGCTGG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1557 GTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAGAGCTGG 1616
Query 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTACTCG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1617 GCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTGCTCG 1676
Query 1677 GCCATTATAGGAAC 1690
|||||| |||||||
Sbjct 1677 GCCATTGTAGGAAC 1690
> AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:7025548-7029698 REVERSE LENGTH=1149
Length=1149
Score = 108 bits (58), Expect = 2e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 1 CTTCCTCCTTCTTCACCATCGCCACTCTGCTCCGTTCGACATTTAGAAGAGAGTGACCAA 60
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 70 CTTCGTCCTTCTTCACCATCGCCACTCTGCTCCGTTCTACATTTAGAAGAGACTGACCAA 11
Query 61 AATCTTCCAT 70
||||| ||||
Sbjct 10 AATCTCCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5