BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472259
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1216 0.0
> AT1G20310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G76070.1);
Has 46 Blast hits to 46 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7032290-7033208
FORWARD LENGTH=919
Length=919
Score = 1216 bits (658), Expect = 0.0
Identities = 834/914 (91%), Gaps = 32/914 (4%)
Strand=Plus/Plus
Query 4 AAGAATAAATGGAAAAAGCTTCAAACAACAACAAGTCCGCGAAGTTCTCGAAAATGCTTC 63
||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct 11 AAGAATAAATGGAAAAAGCTTCAAACAGCAACAAGTCCACGAAATTCTCGAAAATGCTTC 70
Query 64 AAAGAGCTTTGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCAGGGAGAGATTTTCATC 123
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 71 AAAGAGCGATGTCAATTGGTCACAGTGCGGCGCCGTTTAGTCCACGGAGAGATTTTCATC 130
Query 124 AGTACCGTACGACTTCGACGGCGAACAGAGGATAT-TTCTTCTCTAGTCCGTTGGTTCCC 182
|| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 131 AGCACCGTACGACTTCGACGGCGAACAGAGGA-ATCTTCTTCTCCAGTCCGTTGGTTCCT 189
Query 183 ACGGCGGCTAGAGTTCGGAGAAGTACCAAAA-ACGAAGCCGTTTTTGCCGAACCCACTTC 241
||||| ||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 190 ACGGCTGCTAGAGTTAGGAGAAATA-CAAAATACGAAGCCGTTTTTGCCGAACCCACTTC 248
Query 242 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTGGCTAAACCTAAATGTCCGGAGAAGAA 301
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 249 GCCTAAAGTCTCCTGCATCGGTCAGGTCAAACTCGCTAGACCTAAATGTCCGGAGAAGAA 308
Query 302 -AATCAAAGCACCTAAGAATCTCAAAACAGCCTCGTCTTTATCATCTTGTGTTATTAGAG 360
|| |||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||
Sbjct 309 GAA-CAAAGCACCTAAGAATCTCAAAACGGCATCGTCTTTATCGTCTTGTGTTATTAAAG 367
Query 361 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTCTCTTCTCAACGAGAAGTTATCCGT 420
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 368 AAGAAGACAATGGAAGCTTTTCGAAACTAAAGCGTATCTTCTCAATGAGAAGTTATCCGT 427
Query 421 CGGGAAAATCCAACTCCAC--C----GC--C-GC---AGCGAGAGAACATCCGGTCGCGG 468
|| |||||||||||||||| | || | || ||||||||||||||| ||||||
Sbjct 428 CGAGAAAATCCAACTCCACTGCCTTCGCAGCCGCCGCAGCGAGAGAACATCCAATCGCGG 487
Query 469 CGGTTGAAGCGGTCACGGCAGCGCCTTCATTGGGTAAAATGAAGAAATTCGCGAGCAGTA 528
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 AGGTTGATGCGGTTACGGCAGCGCCTTCATTGGGTGCAATGAAGAAATTCGCGAGCAGTA 547
Query 529 GAGAAGCTCTCGGTGGATTCGATTGGACGGTCCAGATGAAACGTGACGAA-GAAGAAGTA 587
||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||
Sbjct 548 GAGAAGCTCTCGGTGGATTTGATTGGACGGTCCAGATGAAACGTGA-GAAAGAAGATGTA 606
Query 588 ACGATTCCATGCTCTGTGAGTATGCCTCTGACTCAGCTAGAGGGTTTGAGTTTATGTCCG 647
| |||||||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||
Sbjct 607 ATGATTCCATGCTCTGTGGGTATACCTCTAACTCAGCTAGAGGATTTGAGTTTGTGTCCG 666
Query 648 CAA-CCAAAGAGTGAAGTTAATTTGTGGAGGAGAAGAACCATGGATCGACCAAAACCACT 706
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 -AAGCCAAAGAGTGAAGTTAATTTGTGGAAGAGAAGAACCATGGATCGACCAAAACCACT 725
Query 707 TCAAGTAATGAAGTAAAAAGCTACTGCTTGAATTTTCTTCGTTGC-TTTTCAATGTATAT 765
||||||||| |||||||| ||| || ||||||||||||||||||| ||||| |||| ||
Sbjct 726 TCAAGTAATTAAGTAAAA-GCTCCTTCTTGAATTTTCTTCGTTGCCTTTTCTATGTCCAT 784
Query 766 TTGCTTTATGTGTCGGAATTTCGTGTCTGCCACGATGAC-ACGTTACTACGTAATACTAA 824
||| ||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||
Sbjct 785 TTGTTTTATGTGTCGGAATTTCGTGGCTGCCACGATG-CTACGTTACTACGTA---CTAA 840
Query 825 GTCTGAGTTTTGTGAATAGACAGAAATTAAAGACATAAATAATTCAAAGTGTGAATAGAT 884
||||||||||||||||||||| |||| || |||| ||||||||||| ||||||||||||
Sbjct 841 GTCTGAGTTTTGTGAATAGACTGAAA--AA-GACAGAAATAATTCAACGTGTGAATAGAT 897
Query 885 CAAAACGttttttt 898
||||||||||||||
Sbjct 898 CAAAACGTTTTTTT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5