BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472260
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1664 0.0
> AT1G20320.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:7033657-7034874 REVERSE LENGTH=1218
Length=1218
Score = 1664 bits (901), Expect = 0.0
Identities = 1118/1221 (92%), Gaps = 21/1221 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTTGATTGAAAACTCTTGTCTAGAACCAGAATCCAAAAGGGCAATATTAAACTGC 60
|||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||
Sbjct 1 ATGTCTTTGATTGAAAACTCATGTCTAGAACCAGAATCCAAAACAGCAACATTAATCTGC 60
Query 61 GGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCGAAGGTAGATAGAGAG 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 61 GGTCACTTCTTCGTCCGTTACGGAATCTGCTGTAACTGCAGATCGACGGTAGACAGAGAC 120
Query 121 TACGGGCGAGCATTCGACTATCTCGTCCATGGTTTACAATTAAGCCACAAAGCCGTTGCG 180
||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 TACGGCCGAGCATTCGATTATCTCGTCCATGGGTTACAATTAAGCCATAAAGCCGTTGCG 180
Query 181 GTTACAAAGAGCCTTACTACACAGTTGGCTTGTCTTAACGAGAGAAAGCTTCATGTAGTC 240
||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||
Sbjct 181 GTTACAAAGAGCCTTACTACACAACTCGCTTGCCTTAACGAGAGAAAGCTTCATCTAGTC 240
Query 241 CTTGACTTGGACCACACGCTTCTCCATTCTGTTATGGTTTCACGGCTTTCTGAAGGAGAG 300
|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 241 CTTGACTTGGACCACACGCTTCTCCATTCTATTATGATTTCACGGCTTTCCGAAGGAGAG 300
Query 301 AAGTATCTGTTGAGAGAATCAGATTTAAGGGAAGATCTTTGGACACTCGACAGAGAGATG 360
|||||||| ||| |||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 AAGTATCTATTGGGAGAGTCAGATTTTAGGGAAGATCTTTGGACACTTGACAGAGAGATG 360
Query 361 TTGATTAAACTTCGACCTTTTGTTCACGAGTTTCTGAATGAAGCCAACGAGTTTTTCTCC 420
|||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 361 CTGATAAAACTTCGACCTTTTGTTCACGAGTTTCTGAAAGAAGCCAACGAGATTTTCTCC 420
Query 421 ATGTATGTCTACACGATGGGGAATCGTGACTACGCTCAGGCTGTGTTGAAGTTGATTGAT 480
||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 421 ATGTATGTCTACACGATGGGGAATCGTGACTACGCTCAGGCTGTGCTGAAATGGATTGAT 480
Query 481 CCGAAGAAAGTATACTTTGGGGATAGGGTCATAACCAGAGACGAGAGTGGTTTTTCGAAA 540
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 481 CCGAAGAAAGTATACTTTGGGGATAGAGTCATTACCAGAGACGAGAGTGGTTTTTCGAAG 540
Query 541 ACGCTAGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGACACTCGGCAT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ACGCTTGATCTTGTGTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGACACTCGTCAT 600
Query 601 GTTTGGCCTGATCATGAGAGGAATCTGCTGCAGATCACCAAGTACAGTTACTTCAGAGAT 660
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 GTTTGGCCTGATCATGAGAGGAATCTGCTACAGATTACCAAGTACAGTTACTTCAGAGAT 660
Query 661 TATAATCAGGA---GGATTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAGC 717
|||| ||| || ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 TATAGTCATGATAAGGAGTCAAAATCTTACGCAGAGGAGAAGAGAGACGAGAGTAGGAAC 720
Query 718 CAGGGATCATTAGCGAATGTTTTGAAAGTTCTCaaaaaaaTTCACCAAGAATTCTTCAGC 777
||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 721 CAGGGATCATTGGCGAATGTTTTGAAAGTTCTCAAGGATGTTCACCAAGAATTTTTCAGA 780
Query 778 GGCGGAATTGAGAAATTAGATTCAAAGGACGTAAGGCTGTTGCTACAGGAACAACACATA 837
|||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 781 GGCGGAATTGAGGAATTAGATTCAAAGGACGTGAGGCTGTTGCTACAAGAACAACACATA 840
Query 838 GCAATTTAAATCAATATTTGCTCCCAAAACCTAAGCCACCATAAACAAATTTCCCCTTTT 897
||| ||| |||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 841 GCAGTTTCAATCAAAATTTGCTCCCAAAACCTAAGCCATCAGAAACAAATGTCCCCTTTT 900
Query 898 ATATCAGGACGGTAACAAGCATTAGAAGGTTAAATTTTACGAGTTCCAATTAATGGAGTT 957
||||||||| | ||||| ||| | || ||||| |||||| ||| ||||| |||||||||
Sbjct 901 ATATCAGGAAGC-AACAAACATGAAAATGTTAAGTTTTACAAGTCCCAATCAATGGAGTT 959
Query 958 AGATACTAGCATAGGTACTGGAAGTGGAACCTTACGTATTCATCGTCGGAGGAACATTGC 1017
|||||||| || ||||||||||||| || | ||||||||| || ||||||||||||
Sbjct 960 AGATACTATCACAGGTACTGGAAGTAGAG--T---GTATTCATCATCCGAGGAACATTGC 1014
Query 1018 TTGGTTTGCATTTGATAGATGACGAAGATTCCAGTATGGTAAAATGTGGCAGACGCTAGT 1077
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1015 TTGGTTTGCACTTGATAGATGTCGAAGATTCCA-TATGGTAAAATGTGGCAGATGCTAGT 1073
Query 1078 TAGAAA-TACATTTACTGTTAA-AGTCTTGACGTATATA--T--GTT-ATGCAAACATAA 1130
| |||| ||||||||||||||| | ||||||||||| || | ||| | ||||||||||
Sbjct 1074 TCGAAAATACATTTACTGTTAATA-TCTTGACGTATGTACATAAGTTTACGCAAACATAA 1132
Query 1131 GTAGAGTA-ATACTTGTGTAATAGTGGTTGAGAAAATTTTAAAAAGTTGTGTTTAATATA 1189
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1133 GTAGAGTAGATACTTGTGTAATAGTGGTTGAGAAA-TTTTAAAA-GTTGTGTTTAATATA 1190
Query 1190 TCATCTTGCGTCTCATCAAAG 1210
||||||||| |||||||||||
Sbjct 1191 TCATCTTGCATCTCATCAAAG 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5