BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472261
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | sterol methyltransfer... 1988 0.0
AT1G76090.1 | Symbols: SMT3 | sterol methyltransferase 3 | chr1... 839 0.0
> AT1G20330.1 | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase
2 | chr1:7038688-7040159 REVERSE LENGTH=1472
Length=1472
Score = 1988 bits (1076), Expect = 0.0
Identities = 1281/1375 (93%), Gaps = 34/1375 (2%)
Strand=Plus/Plus
Query 1 AAAACTTTTTGTCATAAATCAGGC-AAGAAGTAAAAGAGGCTTAAAActctctctctctc 59
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 18 AAAACTTTTTGTCATAAATCAGGCAAAGAAGTAAAAGAGACTTAAAACTCTCTCTCTCTC 77
Query 60 tctctctctctctctcctcactcttaacgaaaaatggactctctaacactcttcttcacc 119
||||| | ||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 78 TCTCT-T-GGTCT-TCCTCACTCTTAACG-AAAATGGACTCTTTAACACTCTTCTTCACC 133
Query 120 ggcgctctcGTCGCCGTCGGTATCTACTGGTTCCTCTGCGTCCTCGGTCCAGCAGAGCGT 179
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 134 GGTGCACTCGTCGCCGTCGGTATCTACTGGTTCCTCTGCGTTCTCGGTCCAGCAGAGCGT 193
Query 180 AAAGGCAAACGAGCCGTAGATCTCTCCGGCGGCTCAATCTCCGCCGAGAAAGTCCAGGAC 239
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 194 AAAGGCAAACGAGCCGTAGATCTCTCTGGTGGCTCAATCTCCGCCGAGAAAGTCCAAGAC 253
Query 240 AATTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAAAGAAATCGAAACCGCCGAGAAA 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AACTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAAAGAAATCGAAACCGCCGAGAAA 313
Query 300 GTTCCAGACTTCGTCGACACATTCTACAATCTCGTCACCGACATCTACGAGTGGGGATGG 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 314 GTTCCAGACTTCGTCGACACATTCTACAATCTCGTCACCGACATATACGAGTGGGGATGG 373
Query 360 GGACAATCCTTCCACTTCTCACCATCAATCCCCGGAAAATCTCACAAAGACGCCACGCGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGACAATCCTTCCACTTCTCACCATCAATCCCCGGAAAATCTCACAAAGACGCCACGCGC 433
Query 420 CTCCACGAAGAGATGGCCGTAGATCTGATCCAAGCCAAACCTGGTCAAAAGATCCTAGAC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 434 CTCCACGAAGAGATGGCCGTAGATCTGATCCAAGTCAAACCTGGTCAAAAGATCCTAGAC 493
Query 480 GTCGGATGCGGCGTCGGCGGTCCGATGCGAGCGATTGCATCTCACTCGCGAGCTAACGTA 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GTCGGATGCGGTGTCGGCGGTCCGATGCGAGCGATTGCATCTCACTCGCGAGCTAACGTA 553
Query 540 GTTGGGATTACGATAAACGAGTATCAGGTGAACAGAGCGCGTCTCCACAATAAGAAAGCT 599
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 554 GTCGGGATTACAATAAACGAGTATCAGGTGAACAGAGCTCGTCTCCACAATAAGAAAGCT 613
Query 600 GGACTCGACGCGCTTTGCGAGGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGAC 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGTCTCGACGCGCTTTGCGAGGTCGTGTGTGGTAACTTCCTCCAGATGCCGTTCGATGAC 673
Query 660 AACAGTTTCGACGGTGCTTATTCGATCGAGGCCACGTGTCACGCGCCGAAGTTAGAAGAA 719
||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||
Sbjct 674 AACAGTTTCGACGGTGCTTATTCCATCGAAGCCACGTGTCACGCGCCGAAGCTGGAAGAA 733
Query 720 GTGTACGCAGAGATCTACAGGGTGTTGAAACCCGGATCTATGTATGTATCGTACGAGTGG 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 734 GTGTACGCAGAGATCTACAGGGTGTTGAAACCCGGATCTATGTATGTGTCGTACGAGTGG 793
Query 780 GTAACGACGGAGAAATTTAAGGCGGAGGATGATGAACACGTGGAGGTAATTCAAGGGATC 839
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 794 GTTACGACGGAGAAATTTAAGGCGGAGGATGACGAACACGTGGAGGTAATCCAAGGGATT 853
Query 840 GAGAGAGGAGATGCGTTACCTGGTCTTAGGGCTTACGTGGATATAGCGGAGACTGCTAAA 899
|||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||
Sbjct 854 GAGAGAGGCGATGCGTTACCAGGGCTTAGGGCTTACGTGGATATAGCTGAGACGGCTAAA 913
Query 900 AAGGTTGGGTTTGAGATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTAAGCCGTGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 914 AAGGTTGGGTTTGAGATAGTGAAGGAGAAGGATCTGGCGAGTCCACCGGCTGAGCCGTGG 973
Query 960 TGGACTAGGCTTAAGATGGGTCGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGGACTAGGCTTAAGATGGGTAGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT 1033
Query 1020 TTGTCTGCTGTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAG 1079
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TTGTCAGCGGTTGGAGTTGCTCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAG 1093
Query 1080 ACTGCTGATTATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 ACTGCTGATTATTTGACCAGAGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATT 1153
Query 1140 CTCTGCAGAAAACCGGAATCTTCGTCGCCGCCGC-CG-GAGGAGAGTTCTTGAG-AAAGG 1196
||||||||||||||||| || || | | | | ||| | || | || |||
Sbjct 1154 CTCTGCAGAAAACCGGAGTCACCGGAGGAGA-GTTCTTGAGAA-AGGTAGAAAGGAAACA 1211
Query 1197 T-A--G-A----GTATGGAGAATTGTCTCAATTtgtttttattttatttttaagttaaat 1248
| | | | |||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1212 TCACCGGAAAAAGTATGGAGAATTTTCTCAATTTGTTTTTATTTT-T----AAGTTAAAT 1266
Query 1249 gaacttggttattgtactcttttttgtgtttaattttaatttggtttgtgttttaagaat 1308
||||||||||||||||| ||||| |||||| | |||||||||||||||| ||||||
Sbjct 1267 CAACTTGGTTATTGTACTATTTTT-GTGTTT--T---AATTTGGTTTGTGTTTCAAGAAT 1320
Query 1309 ttttagttttttttt-tttt-ttA-ATA--AGAATCTTACTCTTGATTTCTCCGC 1358
| ||||||||||||| |||| || ||| |||||||||||||||||||||||||
Sbjct 1321 TATTAGTTTTTTTTTGTTTTGTTGCATATGAGAATCTTACTCTTGATTTCTCCGC 1375
> AT1G76090.1 | Symbols: SMT3 | sterol methyltransferase 3 | chr1:28550409-28551781
REVERSE LENGTH=1373
Length=1373
Score = 839 bits (454), Expect = 0.0
Identities = 916/1134 (81%), Gaps = 51/1134 (4%)
Strand=Plus/Plus
Query 45 AAc-tctctctct-ct-ctct-ctctctctctctcctcactct-taacgaaaaatggact 99
||| ||||||||| | |||| || ||||||| | ||| | || | | |||||||||||
Sbjct 64 AACGTCTCTCTCTATTCCTCTGCT-TCTCTCT-TTCTC-C-CTGTGA--AAAAATGGACT 117
Query 100 ctctaacactcttcttcaccggc-gctctcGTCGCCGTCGGTATCTACTGGTTCCTCTGC 158
| | | |||| || |||| || | |||| | |||| || ||||||||||| | |||
Sbjct 118 CGGTGGCTCTCTACTGCACC-GCTGGTCTCATTGCCGGCGCCGTCTACTGGTTCATATGC 176
Query 159 GTCCTCGGTCCAGCAGAGCGTAAAGGCAAACGAGCCGT-AGATCTCTCCGGCGGCTCAAT 217
||||| ||||||||||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 177 GTCCTAGGTCCAGCAGAACGAAAAGGCAAACGAGCC-TCTGATCTCTCCGGCGGCTCAAT 235
Query 218 CTCCGCCGAGAAAGTCCAGGACAATTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAA 277
|||||| || |||||| | ||||| || || || |||||||||||||||||| |||||
Sbjct 236 CTCCGCAGAAAAAGTCAAAGACAACTATAACCAATACTGGTCTTTCTTCCGCAAACCAAA 295
Query 278 AGAAATCGAAACCGCCGAGAAAGTTCCAGACTTCGTCGACACATTCTACAATCTCGTCAC 337
||| |||||| | ||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 296 AGAGATCGAATCAGCCGAGAAAGTACCTGACTTCGTCGACACGTTCTACAATCTTGTCAC 355
Query 338 CGACATCTACGAGTGGGGATGGGGACAATCCTTCCACTTCTCACCATCA-ATCCCCGGAA 396
|| |||||||||||||||||||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 356 TGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCC-TCATGTCCCTGGAA 414
Query 397 AATCTC-ACAAAGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTGATCCAAGCC 455
|||| | ||||||||||||| | |||||||||| |||||||| ||||| ||| |||
Sbjct 415 AATC-CGACAAAGACGCCACAAGAATCCACGAAGAAATGGCCGTCGATCTCATCAAAGTG 473
Query 456 AAACCTGGTCAAAAGATCCTAGACGTC-GGATGCGGCGTCGGCGGTCCGATGCGAGCGAT 514
||||| || |||||||| || |||| | || |||||||| || || |||||| |||| ||
Sbjct 474 AAACCGGGACAAAAGATTCTTGACG-CTGGTTGCGGCGTGGGTGGGCCGATGAGAGCCAT 532
Query 515 TGCATCTCACTCGCGA-G-CTAACGT-AGTTGGGATTACGATAAACGAGTATCAGGTG-A 570
|| | || || | | | | || || | ||| || || || |||||||| || ||| |
Sbjct 533 CGCGGCCCATTC-CAAGGCCCAA-GTCA-CTGGAATCACTATCAACGAGTACCAAGTGCA 589
Query 571 ACAGAG-CGCGTCTCCACAATAAGAAAGCTGGACTCGACGCGCTTTGCGAGGTCGTGTGT 629
|| ||| | | || ||||| |||||||||||||| || | || ||| | ||||| |||
Sbjct 590 AC-GAGCCAAG-CTTCACAACAAGAAAGCTGGACTTGATTCTCTCTGCAACGTCGTTTGT 647
Query 630 GGTAACTTCCTCCAGATGCCGTTCGATGACAACA-GTTTCGACGGTGCTTATTCGATCGA 688
|||||||| | |||||||||||||||| |||| |||| ||||| ||||| ||||||||
Sbjct 648 GGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTT-GACGGAGCTTACTCGATCGA 706
Query 689 GGCCACGTGTCACGCGCCGAAGTTAGAAGAAGTGTACGCAGAGATCTACAGGGTGTTGAA 748
|| ||||||||||| || ||| | |||||||| ||| | ||||||| ||| ||| ||||
Sbjct 707 AGCTACGTGTCACGCTCCTAAGCTCGAAGAAGTATACTCGGAGATCTTCAGAGTGATGAA 766
Query 749 ACCCGGATCTATGTAT-GTATCGTACGAGTGGGTAACGACGGAGAAATTTA-AGGCGGAG 806
||| |||||| ||| | || || ||||| ||||| || || || |||| | || | ||
Sbjct 767 ACCAGGATCTTTGT-TCGTGTCCTACGAATGGGTCACCACTGAAAAATACAGAGAC-GAT 824
Query 807 GATGATGAACACGTGGAGGTAATTCAAGGGATCGAGAGAGGAGATGC-GTTACCTGGTCT 865
|| || |||||| ||| || ||||||||||||||||||||||| || || ||||| ||
Sbjct 825 GACGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTT-CCTGGACT 883
Query 866 TAG-GGCTTACG-TGGATATAGCGGAGACTGCTAA-AAAGGTTGGGTTTGAGATAGTGAA 922
|| || |||| | |||||||| | ||| || || ||| |||||||||||| |||||||
Sbjct 884 AAGAAGC-TACGCT-GATATAGCCGTGACGGCGAAGAAA-GTTGGGTTTGAGGTAGTGAA 940
Query 923 GGAGAAGGATCTGGCGAGTCCACCGGCTAAGCCGTGGTGG-ACTAGGCTT-AAGATGGGT 980
|||||| ||| |||| | |||||| |||| ||||||||| || || || ||||||||
Sbjct 941 GGAGAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAAC-CGG-TTAAAGATGGGA 998
Query 981 CGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT-TTGTCTGCTGTTGGAGTTGC 1039
|| ||||||||||||| || || |||||||| |||| || |||||| |||| |||||
Sbjct 999 AGGATTGCTTATTGGAGAAACCATGTTGTGGTTGTGATTCTT-TCTGCTATTGGGGTTGC 1057
Query 1040 TCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAGACTGCTGATTATTTGACCAG 1099
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1058 TCCTAAAGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAG 1117
Query 1100 AGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATTCTCTGCAGAAAACC 1153
||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1118 AGGTGGTGAGACTGGAATCTTCTCTCCGATGCATATGATTCTCTGTAGAAAACC 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5