BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472263
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20350.1 | Symbols: ATTIM17-1, TIM17-1 | translocase inner m... 915 0.0
> AT1G20350.1 | Symbols: ATTIM17-1, TIM17-1 | translocase inner
membrane subunit 17-1 | chr1:7043713-7044592 FORWARD LENGTH=880
Length=880
Score = 915 bits (495), Expect = 0.0
Identities = 639/705 (91%), Gaps = 23/705 (3%)
Strand=Plus/Plus
Query 1 CTTGTAGATCAAAATCGAAAATCGATGGGAACTCCAGAATCATCGAGAGAGCCATGTCCG 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGTAGATCAAAATCGAAAATCAATGGGAACTCCAGAATCATCGAGAGAGCCATGTCCG 60
Query 61 GATCGTATCCTCGATGATTTGGGAAGTGCGTTTGGGATGGGTGCTGTTGGTGGATCAGCG 120
||||| ||||| |||||| | ||| ||||||||| |||||||||||||||||||||||||
Sbjct 61 GATCGGATCCTAGATGATGTCGGAGGTGCGTTTGCGATGGGTGCTGTTGGTGGATCAGCG 120
Query 121 TTTCACCTAATCAA-AGGAATCTACAACTCACCCGCCGGAGCTCGTCTCTCCGGCGGCGT 179
| |||||| || || ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 121 TATCACCTCAT-AAGAGGAATCTACAACTCTCCCGGCGGAGCTCGTCTCTCCGGCGGCGT 179
Query 180 TCAAGCTATAAGAATGAACGGGCCGCTAG-TG-GGAGGAAGCTTCGCCGTGTGGGGTGGT 237
||||||| | ||||||| ||||||| || | |||||||||||| ||||||||||||||
Sbjct 180 TCAAGCTTTGAGAATGAGCGGGCCG--AGAAGCGGAGGAAGCTTCTCCGTGTGGGGTGGT 237
Query 238 CTTTTCTCAACCTTTGATTGCGC-TATGGTGTACGCAAGACAAAAGGAAGATCCATGGAA 296
|||| ||||||||| ||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 238 CTTTACTCAACCTTCGATTGTGCGT-TGGTGTACGCAAGACAAAAGGAAGATCCATGGAA 296
Query 297 CTCGATCTTATCTGGTGCAGCCACTGGAGGATTCCTCTCGTTACGTCAAGGCTTAGGCGC 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 CTCGATCTTATCTGGTGCAGCCACTGGAGGATTCCTCTCGTTGCGTCAAGGCTTAGGCGC 356
Query 357 GTCTTCTAGATCGGCTTTAGTCGGAGGTGTGTTTTTGGCTCTCATAGAAGGAGCTGGTAT 416
|||| |||||||||||||||||||||||||||| |||||| | |||||||||| ||||||
Sbjct 357 GTCTGCTAGATCGGCTTTAGTCGGAGGTGTGTTGTTGGCTATGATAGAAGGAGTTGGTAT 416
Query 417 CATGTTGAACAAAGTTCAGAGTGCTATGCAGAACGAGCAGTTCATGGAGGATCATGCAGC 476
|||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 417 CATGTTAAACAAAGTTCAGAGTACTGCGCATAACGAGCAGTTCATGGAGGATCATGCAGC 476
Query 477 TTCTTCGTTACCTTATGGTGTGAATATGGGTCAGATATTTGGTCAGCCCGTACCGGTACT 536
| |||| ||||| |||||| | | ||||||||||| ||||||| ||||||||||||
Sbjct 477 TACTTCTTTACCATATGGT---A-T--GGGTCAGATATCTGGTCAGTCCGTACCGGTACC 530
Query 537 GGAGACTTCTTCTGCTTCTGGTTCGGAAGCTGGTTCGGGATCTTGGTTTGGAAGTTTGTT 596
||||||||||||| ||||| | | |||||||| |||||||||||| ||||||||
Sbjct 531 GGAGACTTCTTCTTCTTCT--T-C------TGGTTCGGTATCTTGGTTTGGGAGTTTGTT 581
Query 597 TAAGAAGAAGAAGGAAACAGAGGATCATCATTCAGAGAGCAAAACTCACATTTTGGAGAG 656
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 582 TAAGAAGAAGAAAGAAACAGAGGATCATCATTCAGAGAGCAGAACTCACATTTTGGAGAG 641
Query 657 CTTTGATGCTCCTCCTGTGCCAACTTATGAGTTTAAGTAATGGAA 701
||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 642 CTTTGATGCTCCTCCTGTGCCTACTTATGAGTTTAAGTGATGGAA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33958283372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5