BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472264
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20370.1 | Symbols: | Pseudouridine synthase family protein... 1157 0.0
AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding pro... 512 5e-144
AT1G76120.1 | Symbols: | Pseudouridine synthase family protein... 311 2e-83
> AT1G20370.1 | Symbols: | Pseudouridine synthase family protein
| chr1:7051577-7053641 REVERSE LENGTH=1972
Length=1972
Score = 1157 bits (626), Expect = 0.0
Identities = 666/686 (97%), Gaps = 0/686 (0%)
Strand=Plus/Plus
Query 1 TTAATCGTAGCAAAGAACTACACTCAGTGGTGAAAATGGAGAATCAAGAGCCTGATATCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 TTAATCGTAGCAAAGAACTACACTCAGTGGTGAAAATGGAGAATCAAGAGCCTGATATCG 78
Query 61 AGAAATTGCCTCGAGACGATGTTCCTGATAGAGAACCAGACCATAAGAAGCTCAAGATTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 AGAAATTGCCTCGAGACGATGTTCCTGATAGAGAACCAGACCATAAGAAGCTCAAGATTT 138
Query 121 CGACCACCGGCCAGGAAATTGATTCCTCGGCTGTTACCGCCGGCGGAAGCAACGTCGCTG 180
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 139 CGACCACCGGCCAGGAAACTGATTCCTCGGCTGTTACCACCGGCGGAAGCAATGTCGCTG 198
Query 181 AGCGTAGAGCGCCGAAATACAGACGCCGGAAAGTCGCAATCATGTTTGCGTTTTGCGGAG 240
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 199 AGCGTAGAGCGCCGAAATACAGACGCCGGAAAGTCGCAATCGTGTTTGCGTTCTGCGGAG 258
Query 241 TAGGCTATCAGGGAATGCAAAAGAATCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAG 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TAGGGTATCAGGGAATGCAAAAGAATCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAG 318
Query 301 AAGCTTTGTTCCATGCCGGAGCAGTACCTGAGGCTGATCGGAACAAACCAAGAAATTACG 360
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 319 AGGCTTTGTTCCATGCCGGAGCAGTACCTGATGCTGATCGGAACAAACCAAGAAATTACG 378
Query 361 AATGGGCACGATCCGCCCGTACCGATAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTG 420
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 379 AATGGGCACGATCCGCTAGAACTGATAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTG 438
Query 421 GTCGTTTTTATGTTGATCCGCCTGGATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATC 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTCGTTTCTATGTTGATCCGCCTGGATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATC 498
Query 481 AGATTCGTGTGTTTGGGTACAAGCGTGTTGCACCGTCGTTTAGCTCCAAGAAATTATGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 499 AGATTCGTGTGTTTGGGTACAAGCGTGTTGCACCGTCGTTTAGCTCCAAAAAATTCTGTG 558
Query 541 ATCGGAGGAGGTATGTGTATCTAATTCCGGTTTTTGCTTTGGATCCATGCGTACATAGTG 600
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 559 ATCGGAGGAGGTATGTGTATCTAATCCCGGTTTTTGCTTTGGATCCATGCGTACATGGTG 618
Query 601 AAGCTGAGATGGTTAGAACGGATTTAGGTTACGAATATGTCAAATGTGTTGAGTGCTTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 619 AAGCTGAGATGGTTAGAACGGATTTAGGTTACGAATATGTCAAATGTGTAGAGTGCTCTG 678
Query 661 AGAAAGGCTATAAGATTCCAGTTGGT 686
|||||||||||||||||||| |||||
Sbjct 679 AGAAAGGCTATAAGATTCCACTTGGT 704
Score = 1142 bits (618), Expect = 0.0
Identities = 670/694 (97%), Gaps = 8/694 (1%)
Strand=Plus/Plus
Query 892 AAGAATCGAATATTTTGGCTAAGGAAGAGATGAACAATGGGGAAGGAGGAGACATGAC-- 949
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 910 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGAAGGAGAAGACATGACTA 969
Query 950 --A--GAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAAGAGAGGTTTAATAGAATTCTAA 1005
| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 970 AAAGCGAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAGGAGAGGTTTAACAGAATACTAA 1029
Query 1006 GCTATTATGTTGGTTCACATAACTTTCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1065
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1030 GCTATTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1089
Query 1066 CAGCTGCGAATCGCTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1125
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 CAGCTGCGAATCGTTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1149
Query 1126 AAGATTTTGTCAAGTGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1185
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AAGATTTTGTCAAATGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1209
Query 1186 TGATTGGACTTGCTGTTGC-AGTCATGAGGAACTATGCACCTGAATCACTGATCGAAACT 1244
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||
Sbjct 1210 TGATTGGACTTGCTGTTGCTA-TCATGAGGAACTATGCTCCTGAATCACTGATCGAAGCT 1268
Query 1245 GCTTTCAAGAAGGATGTGAGAATCAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1304
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1269 TCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1328
Query 1305 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1388
Query 1365 ATGGAAGAGTTCAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 ATGGAAGAGTACAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1448
Query 1425 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1508
Query 1485 AACTATCCTGATCTACGAAGCAATGAATACAAACCGAATGAAGTCATTGTCTATAAGAAG 1544
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1509 AACTATCCTGATCTACGAAGCAATGAATACCAACCGGATGAAGTCATTGTCTATAAGAAG 1568
Query 1545 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAG 1578
||||||||||||||||||||||||||||||||||
Sbjct 1569 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAG 1602
Score = 503 bits (272), Expect = 3e-141
Identities = 313/332 (94%), Gaps = 5/332 (2%)
Strand=Plus/Plus
Query 1608 GGCAATGCAGAGCTATTCGTTGTCGATAAGGTGAATGATGAAACTTCTGAAGGAACGATT 1667
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1602 GGCAATGCTGAGCTATTCGTTGTCGATAAGGTGAATGATGAAACCTCTGAAGGAACGACT 1661
Query 1668 ATGGAAGAGAGGACCACACTAGACGAGAAGGCAACTGGGTGAAGCCGCTTTTATCTACTG 1727
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1662 ATGGAAGAGAGGACCACACTAGAGGAGAAGGCAACAGGGTGAAGCCGCTTTTATCTACTG 1721
Query 1728 CGGATCACTGGATTAAGGTGGAAGCATCAAGCTTCACCCGCAGGTCCAAACCGGACTAGT 1787
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1722 CGGATCACAGGATTAAGGTGGAAGCATCAAGCTTCACCCGCAGGTCCAAACTGGACTAGT 1781
Query 1788 GAGCCAGATGAGTAACATTTGGACATTTGTTTCAGTGTGTCCTTT-GAGTTTTGTCTCTC 1846
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1782 GAGCCAGATGAGTACCATTTGGACATTTGTTTCAGTGTGTCCTTTTGAGTTTTGTCTCTC 1841
Query 1847 ATGACAAAATTTTGGAAACTTAAGTCATG--TGT-T-AGCATTGTGACATTTTGATCTTA 1902
|||||||||||||||||||| |||| ||| ||| | | |||||||||||||||||||||
Sbjct 1842 ATGACAAAATTTTGGAAACTCAAGTAATGAATGTGTTACCATTGTGACATTTTGATCTTA 1901
Query 1903 TAATAATTTTACCGAATAAGTATTGGCTATGC 1934
| ||||| ||| ||||||||||||||||||||
Sbjct 1902 TTATAATGTTATCGAATAAGTATTGGCTATGC 1933
Score = 200 bits (108), Expect = 4e-50
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 687 ATTCAGTCAGACATTTCGTTGAGCAACTTTGATGCATTAGGAACTGATGTCAAGTGTGAA 746
||||||||||||||||||| ||||| || ||||||| ||||| |||||||||||||||||
Sbjct 750 ATTCAGTCAGACATTTCGTCGAGCACCTGTGATGCAATAGGAGCTGATGTCAAGTGTGAA 809
Query 747 ACTTTGAGCTCTAGTGTACCTAATGTAGAAAGTAACTTAAACTCAGAAGTTCTAGATGTG 806
|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 810 ACTTTGAGCTCTAGTGTACCTAGTGCAGAAAATAACTTAAACTCAGAAGTTCTAGATGGG 869
Query 807 GCTGATGTATCTGCT 821
|||||||||||||||
Sbjct 870 GCTGATGTATCTGCT 884
> AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:7025548-7029698 REVERSE LENGTH=1149
Length=1149
Score = 512 bits (277), Expect = 5e-144
Identities = 299/310 (96%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 1393 AGTTCAAATGGAAGTATGTTTATTCACATATTGGCTCTGCTGAAGAAAAAGATGGAGCTG 1452
|||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 293 AGTTCAAATGGAAGCATGTTTACTCTCATATTGGCTCAGCTGAAGAAAAAGATGGAGCTG 352
Query 1453 TGGCGATTTGGTTGCATTCTCTGAACCAGAGAAACTATCCTGATCTACGAAGCAATGAAT 1512
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGGCCATTTGGTTGCATTCTCTGAACCAGAGAAACTATCCTGATCTACGAAGCAATGAAT 412
Query 1513 ACAAACCGAATGAAGTCATTGTCTATAAGAAGATTGGTGAAGCCTCTGAAGAAAATATCC 1572
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCAAACGGAATGAAGTCATTGTCTATAAGAAGATTGGTGAAGCCTCTGAAGAAAATATCC 472
Query 1573 ATGAAGAGAAAATTACAGTGAAAGAGAACACTAATGGCAATGCAGAGCTATTCGTTGTCG 1632
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 ATGAAGAGAAAATTACAGTGAAAGAGAACACTAATGGCAATGCAGAGCTTTTCGTTGTCG 532
Query 1633 ATAAGGTGAATGATGAAACTTCTGAAGGAACGATTATGGAAGAGAGGACCACACTAGACG 1692
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 533 ATAAGGTGAATGATGAAACCTCTGAAGGAACGATTATGGAAGAGAGGACTACACTAGAGG 592
Query 1693 AGAAGGCAAC 1702
||||||||||
Sbjct 593 AGAAGGCAAC 602
> AT1G76120.1 | Symbols: | Pseudouridine synthase family protein
| chr1:28558670-28560473 REVERSE LENGTH=1714
Length=1714
Score = 311 bits (168), Expect = 2e-83
Identities = 312/382 (82%), Gaps = 8/382 (2%)
Strand=Plus/Plus
Query 210 AAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAATCCC 269
||||| || || || || |||||||| || ||||| || || ||||||||||||||||||
Sbjct 246 AAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGAATCCC 305
Query 270 GGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTCCATGCCGGAGCAGTACCT 329
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 306 GGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTGTACCG 365
Query 330 GAGGCTGATCGGAA-CAAACCAAGAAAT-TACGAATGGGCACGATCCGCCCGTACCGATA 387
||| | || || ||| |||| || | ||||| | |||||||| || || || ||||
Sbjct 366 GAGTCC-ATTAGAGGCAAGCCAA-AACTATACGATTTCGCACGATCTGCACGGACAGATA 423
Query 388 AAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTAT-GTTGATCCGCCTGGA 446
||||||| ||||| || |||||||| ||||| ||||| ||| || |||||||| | ||||
Sbjct 424 AAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTT-ATCGTTGATCCACTTGGA 482
Query 447 TTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGGTACAAGCGT 506
|| ||| | || |||||||| || |||||| |||||||| | | || || ||||||| |
Sbjct 483 TTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGCAT 542
Query 507 GTTGCACCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAATT 566
|| | |||||||||||||||||||| || || ||||| || |||||||||||||| ||
Sbjct 543 GTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGCTT 602
Query 567 CCGGTTTTTGCT-TTGGATCCA 587
|| || |||||| ||| |||||
Sbjct 603 CCAGTGTTTGCTCTTG-ATCCA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95782639860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5