BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472265
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 1635 0.0
AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1... 171 2e-41
AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1... 134 3e-30
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 1635 bits (885), Expect = 0.0
Identities = 1119/1231 (91%), Gaps = 20/1231 (2%)
Strand=Plus/Plus
Query 1 ATGGATACGCCAAATGATTTGATGAGAGAAGAGATAAGACTAAAAGTGTCTGAAAATCAC 60
||| |||||||||| |||| |||||||||||||||||| |||||||||| || |||||||
Sbjct 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATAAGCCTAAAAGTGTTTGTAAATCAC 60
Query 61 AATTGGTCCAAACTTTGTCCCGATCTCTTACGGTCGATTCTCGAAAGCTTGAGCTCTATT 120
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120
Query 121 GATTTTTACCGAGCAAAAACCGTTTGCTTAGATTGGTATTCAATTTGGAAAACATGCGTG 180
|||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 121 GATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGTG 180
Query 181 AAGCCTCTTTGTCTATGGCGGATCATATACGTAAAAGATTCTTTGATGTTGTTCAAACCC 240
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 AAGCCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAAACCC 240
Query 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300
Query 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTCGATTCTCATCTCGGTTTCTACATTTTTAAC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTTTAAC 360
Query 361 ATGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGGGGTGGAAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 CTGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAA 420
Query 421 GTGAGATTCGAGCGAAACCACGAGCATGGATTCATCTGGGGACACTTTGTCGAACCTTCT 480
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GTGAGATTCGAGCAAAACCACGAGCATGGATTCAACTGGGGACACTTTGTCGAACCTTCT 480
Query 481 CGTAAGGCTGAC-GTGTCAAAAGCCGCCATCATACGGGGAAGAACAGTTGTTCTGTGGAT 539
||||||| | || ||||||||| |||||| ||||| ||| | || ||||||||||||
Sbjct 481 CGTAAGGTT-ACCGTGTCAAAAATAACCATCACACGGGAAAGTAGAGCTGTTCTGTGGAT 539
Query 540 AGACGAAAGAACAGGAGATTTTCTGGTTGCTTGGATTTTCAACTATCGTTACTTGTTCTC 599
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGTTACTTGTTCTC 599
Query 600 ATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAATAACCATTGGAATATGGAAAACCT 659
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 600 ATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAATATGGAAAGCTT 659
Query 660 AAATTTCA-TTTTTTGGGATTTGGCTTGCAGATACAACAAGCTTTATCTCTACACTACTA 718
||||| | |||||||| ||||||||| |||| ||| |||||||||| |||||| |||||
Sbjct 660 GAATTTAAGTTTTTTGG-ATTTGGCTTACAGAAACAGCAAGCTTTATATCTACATTACTA 718
Query 719 ATG-GTCACATCAAAGTTATTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGaaaaa 777
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 A-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGATAAA 777
Query 778 aaCCCGTATTGGGAACATCCATTTCGATACTTAACCAAACAAGAGGAA-AGCATTCTTCA 836
|||||||||||||||||||| |||||||||||||||||| ||| |||| | |||| | |
Sbjct 778 AACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAATA-CATTAATAA 836
Query 837 TAGTAGAATCGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTATAGTCTCA-A 895
|| ||||| ||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 837 GAGGAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACA 896
Query 896 TAAGTTCGACAGAGATACCTTTGTTTTATATCTTTAAAATGAATCTTGCAAGTAAAATAT 955
||| || | ||||| | ||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 897 -AAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGTAAAATAT 955
Query 956 GGGAGAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA 1015
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 GGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA 1015
Query 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATATTTCGTTA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA 1075
Query 1076 AAGAAGACTTATGGACA--ATAG-ATTTTCATGCTGTTTCAAATTGCGGTGTCTTCGATC 1132
| ||| ||||| || ||| ||| || ||||| | ||||||| |||||||||||||
Sbjct 1076 --GT-GACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATC 1132
Query 1133 TTGCAACAAGTAAAATCAAATGGTCTAAGGAAA-ACAGTTTTAATAATAAATATGTTACA 1191
|||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| ||
Sbjct 1133 TTGCAACAAGTATAATCAAATGGTCTAAG-AAAGACAGTTTTAATAATAGATATGTT-CA 1190
Query 1192 A-CTCGGTGGTTTGTTCCAGGATTTTCTTAG 1221
| || | |||| ||||||||||| |||||
Sbjct 1191 AACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221
> AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1100202
FORWARD LENGTH=651
Length=651
Score = 171 bits (92), Expect = 2e-41
Identities = 159/189 (84%), Gaps = 14/189 (7%)
Strand=Plus/Plus
Query 979 GATG-ATGAGATGTTGATCTTTGGTCATGGGGTTACAATAAGAGCACCGGTTCAAGATGT 1037
|||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 417 GATGAATGAGATGTTGATCTTTGGTCATGGGGTTACAATGAGAGCACAAGTTCATGATGT 476
Query 1038 TGGTGATGGAATCAAGAGTGG-TTCAATATATTTCGTTAAAGAAGA-CTTATGGACAATA 1095
|||||||||||||||||| || |||||| | ||||||| |||| || ||| ||| |
Sbjct 477 TGGTGATGGAATCAAGAG-GGATTCAATCTGTTTCGTTGAAGATGATCTT-TGGCCG--- 531
Query 1096 GATTTTCATGCTGT--TTCAAATTGCGGTGTCTTCGATCTTGCAACAAGTAAAATCAA-A 1152
|||||| || | || ||||||||||||| ||||| ||||||| ||||||| ||| || |
Sbjct 532 GATTTTGAT-C-GTCCTTCAAATTGCGGTATCTTCAATCTTGCCACAAGTAGAAT-AACA 588
Query 1153 TGGTCTAAG 1161
||| |||||
Sbjct 589 TGGCCTAAG 597
> AT2G03580.1 | Symbols: | F-box family protein-related | chr2:1093264-1094481
FORWARD LENGTH=435
Length=435
Score = 134 bits (72), Expect = 3e-30
Identities = 153/189 (81%), Gaps = 18/189 (10%)
Strand=Plus/Plus
Query 151 GATTGGTA-TTCAATTTGGAAAACATGCGTG-AA--GCCTCTTTGTCTATGGCGGATCAT 206
|||||||| ||| ||||||||||||||||| || |||||| | || ||||||||||||
Sbjct 52 GATTGGTATTTC-GTTTGGAAAACATGCGTGAAACGGCCTCTGTATCCATGGCGGATCAT 110
Query 207 ATACGTA--A--AAGATTCTTTGATG-TTGTTCAAACCCGGAGAAGACAAGATTTACAAA 261
|||| || | | ||||||| | | ||||| | ||||| |||||||||||||||
Sbjct 111 ATAC-TACGATGATGATTCTTCCA-GTTTGTTTGATCCCGGTGAAGACAAGATTTAC--- 165
Query 262 GGAAC-AAA--CGTTGGACTCTCCAACGACAGCTATTATATGGCTAGCTCCGGAAACTGG 318
|| || ||| | | |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 166 GGGACAAAACTCCTCGGACTCTCTGACAATAGCTATTATATGGCTAGCTCCGGAAACTGG 225
Query 319 CTCTTGATG 327
|||||||||
Sbjct 226 CTCTTGATG 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5