BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472269
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01040.1 | Symbols: LAC8 | laccase 8 | chr5:13128-16173 REVE... 2558 0.0
AT5G01050.1 | Symbols: | Laccase/Diphenol oxidase family prote... 2466 0.0
> AT5G01040.1 | Symbols: LAC8 | laccase 8 | chr5:13128-16173 REVERSE
LENGTH=2052
Length=2052
Score = 2558 bits (1385), Expect = 0.0
Identities = 1651/1781 (93%), Gaps = 11/1781 (1%)
Strand=Plus/Plus
Query 1 TATCTTTACATCAACAATGCCTCGACTTCATCATTATCTCCCAAATCAAGCCTTCCTCGT 60
|||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 16 TATCCTTACATTAACAATGCCTCGACTTCATCATTATCTCTCAAATCAAGCGTTCCTCGT 75
Query 61 CTTTTTTCTCTTCTCTTCCATTGCCTCAGCAGCTACTGTCGAACATGTTTTCCA-AGTCA 119
| || ||||||||||||||||||||||||||||| ||||||||||||| |||| | ||
Sbjct 76 CCTTCTTCTCTTCTCTTCCATTGCCTCAGCAGCTGTTGTCGAACATGTTCTCCACA-TCC 134
Query 120 AAGACGTCATGGTGAAACCGTTATGCAAGGAACAAATGATACCGGCAGTTAATGGAAATC 179
|||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||| ||
Sbjct 135 AAGACGTCGTGGTGAAACCGTTATGCAAGGAGCAAATAATACCGGCAGCTAATGGAAGTC 194
Query 180 TTCCCGGTCCAACGATCAACGTTAGAGAAGGCGACACTCTTGTGGTTCATGTCATCAACA 239
||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 195 TTCCCGGCCCAACGATAAACGTTAGAGAAGGCGACACTCTTGTGGTTAATGTCATTAACA 254
Query 240 ACTCAACTTATAATGTAACCATCCACTGGCATGGAGTTTTTCAGCTGAAGAGCGTATGGA 299
|||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 255 ACTCAACTTACAATGTAACCATCCACTGGCATGGAGTTTTCCAGTTGAAGAGCGTATGGA 314
Query 300 TGGACGGTGCAAATATGATAACTCAATGTCCGATTCAACCTA-GTTACAACTTCACATAT 358
|||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 315 TGGACGGTGCGAATATGATAACTCAATGTCCGATTCAACC-AGGTTACAACTTCACATAT 373
Query 359 CAATTCGATATTACCGGTCAAGAAGGTACATTGTTGTGGCATGCACACGTCGTTAATCTA 418
||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 374 CAATTTGATATCACTGGACAAGAAGGTACATTGTTATGGCACGCACACGTCGTTAATCTA 433
Query 419 CGAGCCACTCTTCACGGGGCTCTACTCATCCGTCCCCGATCCGGCCGTCCTTATCCTTTT 478
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 434 CGTGCCACTCTTCACGGGGCTCTAGTCATCCGTCCCCGATCCGGCCGTCCTTACCCTTTT 493
Query 479 CCTAAACCCTACGAGGAAGTTCCTCTCATTTTTCAACAATGGTGGGACACAGATGTTAGA 538
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 494 CCTAAACCCTACAAGGAAGTTCCTATCGTTTTTCAACAATGGTGGGACACAGATGTTAGA 553
Query 539 CTTCTCGAAATACGGCCAGCTCCGGTTTCTGATGCTTACCTCATGAATGGCCTCGCTGGA 598
|||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 554 CTTCTCCAATTACGGCCAGCTCCGGTTTCTGATGCTTACCTCATCAATGGCCTCGCCGGA 613
Query 599 GATTCATATCCTTGCTCTAAGAATAGAATGTTTAACCTCAAGGTAGTACAAGGCAAAACA 658
|||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||
Sbjct 614 GATTCATATCCTTGCTCTGAGAATAGAATGTTTAACCTCAAAGTTGTACAAGGAAAAACA 673
Query 659 TACTTGCTAAGGATTATAAACGCAGCACTCAACACTCACCTCTTCTTCAAAATAGCCAAT 718
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TACTTGCTAAGGATCGTAAACGCAGCACTCAACACTCACCTCTTCTTCAAAATAGCCAAT 733
Query 719 CACAACGTCACAGTTGTCGCTGTAGATGCTGTCTACACGACACCGTACCTAACCGATGTG 778
|||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 734 CACAACGTCACAGTTGTCGCTGTAGATGCTGTCTACTCGACGCCGTACCTCACCGATGTG 793
Query 779 ATGATCTTAACCCCGGGACAAACCGTTGACGCACTTCTCACCGCCGACCAGCCCATTGGA 838
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 794 ATGATCTTAACGCCGGGACAGACCGTTGACGCACTTCTCACCGCCGACCAGGCCATTGGA 853
Query 839 AAGTACTACATGGCCACCATCCCTTACATTAGTGCCATTGGGATACCGACCCCTGATACC 898
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| || | |
Sbjct 854 AAGTACTACATGGCCACCCTCCCTTACATTAGTGCCATTGGGATACCAACCCCCGACATC 913
Query 899 AACCCCACCAGAGGCTTAATCGTCTACGAGGGTGCCACGTCATCATCG-C-CC-GTGAAG 955
|| |||||||||||||||||||||||| ||||||||||||||||||| | || | | ||
Sbjct 914 AAACCCACCAGAGGCTTAATCGTCTACCAGGGTGCCACGTCATCATCATCGCCAGCGGAG 973
Query 956 CCGTTGATGCCTGCGCCGAATGACATACCCACCGCTCATAGGTTCTCATCAAACATCACT 1015
||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 974 CCGTTGATGCCTGTGCCGAATGACATGTCCACCGCTCATAGGTTCACCTCAAACATCACT 1033
Query 1016 AGCCTCGTGGGTGGACCACACTGGACACCAGTGCCTCGCCATATAGACGAGAAGATGTTC 1075
|||||||| ||||||||||||||||||||||| ||||| || | |||||||||||||||
Sbjct 1034 AGCCTCGTTGGTGGACCACACTGGACACCAGTCCCTCGTCACGTGGACGAGAAGATGTTC 1093
Query 1076 ATAACGATGGGGCTTGGCTTAGACCCATGTCCTTCGGACATCAAATGTATTGGACCGTTA 1135
||||| |||||||||||||||||||||||||| ||| || ||| |||||||||||||||
Sbjct 1094 ATAACCATGGGGCTTGGCTTAGACCCATGTCCAGCGGGCACCAAGTGTATTGGACCGTTA 1153
Query 1136 GGTCAAAGATATGCTGGTTCTCTCAACAACCGCACTTTTATGATCCCGGAGAGAATCTCT 1195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GGTCAAAGGTATGCTGGTTCTCTCAACAACCGCACTTTTATGATCCCGGAGAGAATCTCT 1213
Query 1196 ATGCAAGAGGCTTATTTTTACAACATTACTGG-AGTCTACACCGACGATTTTCCCAACCA 1254
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1214 ATGCAAGAGGCTTATTTTTACAACATTAGTGGCA-TCTACACCGACGATTTTCCCAACCA 1272
Query 1255 ACCACCGGTTAAATTTGATTACACAAGATTCGAACAGCGTACCAATTCTGACTTCAAGAT 1314
||||||| |||||||||||||||||| ||||||||| ||||||||| |||| | |||||
Sbjct 1273 ACCACCGCTTAAATTTGATTACACAAAATTCGAACAACGTACCAATAATGACATGAAGAT 1332
Query 1315 GATGTTTCCGGAAAGAAAGACTAGCGTCAAGACAATTAGGTGTAATTCTACAGTCGAGAT 1374
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 1333 GATGTTTCCGGAAAGAAAGACTAGCGTCAAGAAAATTAGATTTAATTCTACAGTCGAGAT 1392
Query 1375 CGTTTTGCAAAACACCGCGATACTCACCAGGGAGAGCCACCCCATGCACCTTCATGGCTT 1434
||||||||| ||||| || ||| || || ||||||||||||||||||||| || || ||
Sbjct 1393 CGTTTTGCAGAACACGGCTATAATCTCCCCGGAGAGCCACCCCATGCACCTCCACGGTTT 1452
Query 1435 CAACTTCTATGTGTTGGGTTATGGATTTGGTAACTACGATCCTGTCCGTGATGCAAGAAA 1494
||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 1453 CAACTTCTATGTGTTAGGTTATGGATTTGGTAACTATGATCCTATTCGTGATGCAAGAAA 1512
Query 1495 GCTAAATCTATTTAACCCACAAATGCGTAATACCGTTGGTGTACCACCAGGTGGATGGGT 1554
||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1513 GCTTAATCTATTTAACCCGCAAATGCATAATACCGTTGGTGTACCACCAGGCGGATGGGT 1572
Query 1555 TGTCCTCAGATTTATCGCTAATAATCCTGGTATATGGCTGTTCCATTGTCACATGGATGC 1614
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1573 TGTCCTCAGATTTATCGCTAATAATCCTGGTGTATGGCTGTTCCATTGTCACATGGATGC 1632
Query 1615 TCATTTACCATACGGAATTATGA-TGGCTTTCATAGTTCAAAATGGGCCAACTCCAGAAA 1673
|||||||||||||| ||||||| || |||||||||||||||| ||||||||||| ||||
Sbjct 1633 ACATTTACCATACGGGATTATGAGTG-CTTTCATAGTTCAAAACGGGCCAACTCCGGAAA 1691
Query 1674 CGAGCTTGCCATCTCCACCGTCGAATCTTCCGCAATGCACTAGGGATCCTAGGATCTATG 1733
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1692 CGAGCTTGCCATCTCCACCGTCGAATCTTCCGCAATGCACTCGGGATCCTACGATCTATG 1751
Query 1734 ACTCTCCGATGACTAATGTTGATTTGTCTTACTAAAAGTAA 1774
|||||| || |||||| |||||||||||||||||||||||
Sbjct 1752 ACTCTCGGACGACTAACATTGATTTGTCTTACTAAAAGTAA 1792
> AT5G01050.1 | Symbols: | Laccase/Diphenol oxidase family protein
| chr5:18086-20812 REVERSE LENGTH=1884
Length=1884
Score = 2466 bits (1335), Expect = 0.0
Identities = 1628/1770 (92%), Gaps = 17/1770 (1%)
Strand=Plus/Plus
Query 17 ATGCCTCGACTTCATCATTATCTCCCAAATCAAGCCTTCCTCGTCTTTTTTCTCTTCTCT 76
||||||||| ||||||||| ||| |||||||||||||||||||| || |||||||||||
Sbjct 1 ATGCCTCGAGTTCATCATTCTCTGTCAAATCAAGCCTTCCTCGTCCTTCTTCTCTTCTCT 60
Query 77 TCCATTGCCTCAGCAGCTACTGTCGAACATGTTTTCCAAGTCAAAGACGTCATGGTGAAA 136
||||||||||||||||||| ||||||||||||| |||| || ||||||||| |||||| |
Sbjct 61 TCCATTGCCTCAGCAGCTATTGTCGAACATGTTCTCCACGTTAAAGACGTCGTGGTGACA 120
Query 137 CCGTTATGCAAGGAACAAATGATACCGGCAGTTAATGGAAATCTTCCCGGTCCAACGATC 196
||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 CCGTTGTGCAAGGAGCAAATGATACCGATAGTTAATGGAAGTCTTCCCGGTCCAACGATA 180
Query 197 AACGTTAGAGAAGGCGACACTCTTGTGGTTCATGTCATCAACAACTCAACTTATAATGTA 256
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 181 AACGTTAGAGAAGGCGACACCCTTGTCGTTCATGTCATTAACAAGTCAACTTACAATGTA 240
Query 257 ACCATCCACTGGCATGGAGTTTTTCAGCTGAAGAGCGTATGGATGGACGGTGCAAATATG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ACCATCCACTGGCATGGAGTTTTTCAGCTGAAGAGCGTATGGATGGACGGTGCGAATATG 300
Query 317 ATAACTCAATGTCCGATTCAACCTAGTTACAACTTCACATATCAATTCGATATTACCGGT 376
||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||| |||||
Sbjct 301 ATAACTCAATGTCCGATTCAACCAAGTAACAATTTCACGTATCAATTTGATATCACCGGA 360
Query 377 CAAGAAGGTACATTGTTGTGGCATGCACACGTCGTTAATCTACGAGCCACTCTTCACGGG 436
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 361 CAAGAAGGTACATTGTTGTGGCATGCACACGTCGTTAATCTACGTGCCACTATTCACGGG 420
Query 437 GCTCTACTCATCCGTCCCCGATCCGGCCGTCCTTATCCTTTTCCTAAACCCTACGAGGAA 496
|||||| | |||||||||||||||||||||||||| ||||| |||||||| ||| |||||
Sbjct 421 GCTCTAATTATCCGTCCCCGATCCGGCCGTCCTTACCCTTTCCCTAAACCATACAAGGAA 480
Query 497 GTTCCTCTCATTTTTCAACAATGGTGGGACACAGATGTTAGACTTCTCGAAATACGGCCA 556
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GTTCCTCTCATTTTTCAACAATGGTGGGACACAGATGTTAGACTTCTCGAACTACGGCCA 540
Query 557 GCTCCGGTTTCTGATGCTTACCTCATGAATGGCCTCGCTGGAGATTCATATCCTTGCTCT 616
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 541 GCTCCGGTTTCTGATGCTTACCTCATCAATGGCCTCGCCGGAGATTCATATCCTTGCTCT 600
Query 617 AAGAATAGAATGTTTAACCTCAAGGTAGTACAAGGCAAAACATACTTGCTAAGGATTATA 676
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 601 AAGAATAGAATGTTTAACCTCAAAGTTGTACAAGGAAAAACATACTTGCTAAGGATTATA 660
Query 677 AACGCAGCACTCAACACTCACCTCTTCTTCAAAATAGCCAATCACAACGTCACAGTTGTC 736
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 AACGCAGCACTCAACACTCACCTCTTCTTCAAAATAGCCAATCACAACGTTACAGTTGTT 720
Query 737 GCTGTAGATGCTGTCTACACGACACCGTACCTAACCGATGTGATGATCTTAACCCCGGGA 796
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 721 GCTGTAGATGCTGTCTACACGACGCCGTACCTCACCGATGTGATGATCTTAACACCGGGA 780
Query 797 CAAACCGTTGACGCACTTCTCACCGCCGACCAGCCCATTGGAAAGTACTACATGGCCACC 856
||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 781 CAAACAATTGACGCAATTCTCACCGCTGACCAGCCCATTGGAACGTACTACATGGCCATC 840
Query 857 ATCCCTTACATTAGTGCCATTGGGATACC-G-A-CCCCTGATACCAACCCCACCAGAGGC 913
||||||||| |||||||||| ||| |||| | | |||| || ||||| ||||||||||||
Sbjct 841 ATCCCTTACTTTAGTGCCATCGGGGTACCGGCATCCCCCGACACCAAACCCACCAGAGGC 900
Query 914 TTAATCGTCTACGAGGGTGCCACG---TCATCATCGCCCGTGAAGCCGTTGATGCCTGCG 970
|||||||||||||||||||| ||| ||||||||||| ||||||| ||||||| ||
Sbjct 901 TTAATCGTCTACGAGGGTGCTACGTCATCATCATCGCCAACAAAGCCGTGGATGCCTCCG 960
Query 971 CCGAATGACATACCCACCGCTCATAGGTTCTCATCAAACATCACTAGCCTCGTGGGTGGA 1030
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 961 GCGAATGACATACCCACCGCTCATAGGTTCTCCTCGAACATCACTAGCCTCGTGGGTGGA 1020
Query 1031 CCACACTGGACACCAGTGCCTCGCCATATAGACGAGAAGATGTTCATAACGATGGGGCTT 1090
|| |||||||| || |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1021 CCTCACTGGACGCCGGTGCCTCGTCACGTGGACGAGAAGATGTTCATAACGATGGGGCTT 1080
Query 1091 GGCTTAGACCCATGTCCTTCGGACATCAAATGTATTGGACCGTTAGGTCAAA-GATATGC 1149
||||||||||||||||||||| || ||| ||| |||||||||||| ||||| | || ||
Sbjct 1081 GGCTTAGACCCATGTCCTTCGAACGCCAAGTGTGTTGGACCGTTAGATCAAAGGTTA-GC 1139
Query 1150 TGGTTCTCTCAACAACCGCACTTTTATGATCCCGGAGAGAATCTCTATGCAAGAGGCTTA 1209
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TGGATCTCTAAACAACCGCACTTTTATGATTCCGGAGAGAATCTCTATGCAAGAGGCTTA 1199
Query 1210 TTTTTACAACATTACTGGAGTCTACACCGACGATTTTCCCAACCAACCACCGGTTAAATT 1269
||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct 1200 TTTTTACAACATTACTGGAGTCTACACTGACGATTTTCCCGACCAACCACCGCTTAAATT 1259
Query 1270 TGATTACACAAGATTCGAACAGCGT---ACCAATTCTGACTTCAAGATGATGTTTCCGGA 1326
||||| ||||| ||| ||||||| | |||||||||||| | ||||||||||||||||
Sbjct 1260 TGATTTCACAAAATTTGAACAGCATCCCACCAATTCTGACATGGAGATGATGTTTCCGGA 1319
Query 1327 AAGAAAGACTAGCGTCAAGACAATTAGGTGTAATTCTACAGTCGAGATCGTTTTGCAAAA 1386
||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||
Sbjct 1320 AAGAAAGACTAGCGTCAAGACAATTAGATTTAATTCTACAGTGGAGATCGTTTTGCAGAA 1379
Query 1387 CACCGCG-ATACTCACCAGGGAGAGCCACCCCATGCACCTTCATGGCTTCAACTTCTATG 1445
|| || | ||||| ||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 1380 CA-CGGGAATACTAACCCCGGAGAGCCACCCCATGCACCTTCACGGTTTCAACTTCTATG 1438
Query 1446 TGTTGGGTTATGGATTTGGTAACTACGATCCTGTCCGTGATGCAAGAAAGCTAAATCTAT 1505
|||| |||||||||||||||||||| |||||| | ||||||||||||||||| |||||||
Sbjct 1439 TGTTAGGTTATGGATTTGGTAACTATGATCCTATTCGTGATGCAAGAAAGCTTAATCTAT 1498
Query 1506 TTAACCCACAAATGCGTAATACCGTTGGTGTACCACCAGGTGGATGGGTTGTCCTCAGAT 1565
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTAACCCGCAAATGCACAATACCGTTGGTGTACCACCAGGTGGATGGGTTGTCCTCAGAT 1558
Query 1566 TTATCGCTAATAATCCTGGTATATGGCTGTTCCATTGTCACATGGATGCTCATTTACCAT 1625
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1559 TTATCGCTAATAATCCTGGTATATGGCTGTTCCATTGTCACATGGATGCACATTTACCAT 1618
Query 1626 -ACGGAATTATGATGGCTTTCATAGTTCAAAATGGGCCAACTCCAG-AAACGAGCTTGCC 1683
| |||||||||||||||||||||||||||||||||||||| || | ||||||| |||||
Sbjct 1619 TA-GGAATTATGATGGCTTTCATAGTTCAAAATGGGCCAAC-CCGGGAAACGAGTTTGCC 1676
Query 1684 ATCTCCACCGTCGAATCTTCCGCAATGCACTAGGGATCCTAGGATCTATGACTCTCCGAT 1743
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 1677 ATCTCCACCGTCGAATCTTCCGCAATGCACTCGGGATCCTACGATCTATGACTCTCGGAC 1736
Query 1744 GACTAATGTTGATTTGTCTTACTAAAAGTA 1773
||||||||||||| ||||||||||||||||
Sbjct 1737 GACTAATGTTGATATGTCTTACTAAAAGTA 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5