BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472271 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT1G20430.1 | Symbols: | unknown protein; Has 29 Blast hits to... 852 0.0 > AT1G20430.1 | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7083196-7083835 REVERSE LENGTH=640 Length=640 Score = 852 bits (461), Expect = 0.0 Identities = 548/588 (93%), Gaps = 13/588 (2%) Strand=Plus/Plus Query 1 TTAGACATCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGCTGATCCTCTCACCGGGAA 60 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2 TTAGACACCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGTTGATCCTCTCACCGGGAA 61 Query 61 AGATCCGGCGAAGGCTTTAACAGCTGTAGCGTCTGGATTCTTCGAGAATGTGAAGAAGAA 120 ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || Sbjct 62 AGATCCGGCGAAGGCTTTAACCGCTGTTGCTTCTGGATTCTTCGAGAATGTGAAGAAAAA 121 Query 121 CAAGCAAAGCTTCTTCCAGTTCTTCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 180 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 122 CAAGCAAAGCTTCTTCCAGTTCGCCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 181 Query 181 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 241 Query 241 GCAAGATAGTTTGACGGATCGTATGAGTAAAATCAAGAGCGATCTTCTTCATCAAGCTTC 300 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 242 ACAAGATAGTTTGACGGATCGTATGAGTAAAATCAAAAGCGATCTTCTTCATCAAGCATC 301 Query 301 GATTGACTCTACCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGCGACGATAAAAA 360 |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 302 GATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGTGAAGATAAAAA 361 Query 361 GTGAACGGAGATTTGATTGATTTTAAGTCAACGAGGTTACCATTTTCTTACTCGTGTGAT 420 |||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| ||| Sbjct 362 GTGATCGGAGATTTGATTGGTTTGA-GTCAACGAGGTTACCATTTTCTTACTCGTGCGAT 420 Query 421 GGTTATTGTAGTTCTGAAACACATGTCTCTCTGTCTTTAGATTGGAAGGTTTTAGCTAAT 480 | ||||||||||||| ||||||||||||||||||||| ||||||||||||||| || ||| Sbjct 421 G-TTATTGTAGTTCTAAAACACATGTCTCTCTGTCTTAAGATTGGAAGGTTTTGGCGAAT 479 Query 481 GAATGAGTAGGG-TTTTAAAGGTTGATGTGATT-CAGACAACGGTGTATCGTTT-GACTT 537 |||| ||||||| |||||| ||| ||| ||||| ||||||| |||||||||||| ||||| Sbjct 480 GAATAAGTAGGGCTTTTAA-GGT-GATATGATTTCAGACAATGGTGTATCGTTTTGACTT 537 Query 538 ATTTGAGAATCTGTTTCGT-A--T--TTA-CTTTGTTGTGGCTGAATC 579 ||||||||||||| || || | | ||| |||||||||||||||||| Sbjct 538 ATTTGAGAATCTGCTTAGTGAGATCATTAACTTTGTTGTGGCTGAATC 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5