BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472271
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20430.1 | Symbols: | unknown protein; Has 29 Blast hits to... 852 0.0
> AT1G20430.1 | Symbols: | unknown protein; Has 29 Blast hits
to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:7083196-7083835 REVERSE
LENGTH=640
Length=640
Score = 852 bits (461), Expect = 0.0
Identities = 548/588 (93%), Gaps = 13/588 (2%)
Strand=Plus/Plus
Query 1 TTAGACATCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGCTGATCCTCTCACCGGGAA 60
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2 TTAGACACCGAAAATGGCTTCGTCTGCGCCACAGGGATCTGTTGATCCTCTCACCGGGAA 61
Query 61 AGATCCGGCGAAGGCTTTAACAGCTGTAGCGTCTGGATTCTTCGAGAATGTGAAGAAGAA 120
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 62 AGATCCGGCGAAGGCTTTAACCGCTGTTGCTTCTGGATTCTTCGAGAATGTGAAGAAAAA 121
Query 121 CAAGCAAAGCTTCTTCCAGTTCTTCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 122 CAAGCAAAGCTTCTTCCAGTTCGCCGCCATGACTGGGATTTTGCTTCTGAGTTTCCGATC 181
Query 181 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGTAAGTCAGAAGTACCGAATTCACGATCTGGAGGAAGACACTGCTGTTCTCAAGAAGGA 241
Query 241 GCAAGATAGTTTGACGGATCGTATGAGTAAAATCAAGAGCGATCTTCTTCATCAAGCTTC 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 242 ACAAGATAGTTTGACGGATCGTATGAGTAAAATCAAAAGCGATCTTCTTCATCAAGCATC 301
Query 301 GATTGACTCTACCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGCGACGATAAAAA 360
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 302 GATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCGTCTACTTTTCGGTGAAGATAAAAA 361
Query 361 GTGAACGGAGATTTGATTGATTTTAAGTCAACGAGGTTACCATTTTCTTACTCGTGTGAT 420
|||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| |||
Sbjct 362 GTGATCGGAGATTTGATTGGTTTGA-GTCAACGAGGTTACCATTTTCTTACTCGTGCGAT 420
Query 421 GGTTATTGTAGTTCTGAAACACATGTCTCTCTGTCTTTAGATTGGAAGGTTTTAGCTAAT 480
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 421 G-TTATTGTAGTTCTAAAACACATGTCTCTCTGTCTTAAGATTGGAAGGTTTTGGCGAAT 479
Query 481 GAATGAGTAGGG-TTTTAAAGGTTGATGTGATT-CAGACAACGGTGTATCGTTT-GACTT 537
|||| ||||||| |||||| ||| ||| ||||| ||||||| |||||||||||| |||||
Sbjct 480 GAATAAGTAGGGCTTTTAA-GGT-GATATGATTTCAGACAATGGTGTATCGTTTTGACTT 537
Query 538 ATTTGAGAATCTGTTTCGT-A--T--TTA-CTTTGTTGTGGCTGAATC 579
||||||||||||| || || | | ||| ||||||||||||||||||
Sbjct 538 ATTTGAGAATCTGCTTAGTGAGATCATTAACTTTGTTGTGGCTGAATC 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5